LOC122350494 (eif2s2,if2b,LOC107566961,LOC107756850,LOC107739644,LOC107691551,LOC107573966)


Basic Information

Item Value
gene id LOC122350494
gene name eif2s2,if2b,LOC107566961,LOC107756850,LOC107739644,LOC107691551,LOC107573966
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20460129 ~ 20464209 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247019.1
CGTGATGTAATCACGTGTCACCGGAAGTGCGCGTGCGCGCTAAGCTCGCCCTGTGCTGATGCAAGACGGTGGATGTGAACGGTAGCGTGAACCGTGTCAGCGATATCTAACAGCACGAGAAACAGCAACGTCCGATTCAGTCATCATGTCAGAGGACGAGATTTTATTCGACCCCTCCacaacaaagaagaagaagaagaagaagaagcccTTTATGCTCGACGAGGATGGAGATGCCGAGGAGACTCAACAGACTGAACTGAAAGAAGCCGAGCCCGAAGCAGCAGAGGAGCGAGAGCTGGATCCTGAAGATGATGAAGTCAAGAAAAAGGAGCCTTCGGATGATTTAGACGATCTGAACTTCTTCaaccagaagaagaagaagaagaaacagaagaaggTGTTTGAAAACGACATCGAGGAGGGAATGAAGGAGCTGAAAATCGAGGGAGAGCAGCAGGAAATGGTGGAGGACGATGAGTTTGATCTGATGCTTCCgactaaaaaaaagaagtcaaaaaaaGTGGAATTTGTTGAGGAGAGTGATACAGTGGAAAAGGACGATGTTGTCGAGGATAATAAAAGCACAGATGGCATCACATTCAGTTCACAGTCGGGCCCAGCATGGGCCGGTTCAGAGAGAGATTACACCTACGATGAGCTGCTGAGCCGGGTGTTTAACATCATGAGGGAGAAGAACCCTGATATGGTGGCAGGGGAGAAGAGGAAGTTTGTGATGAAGCCTCCTCAGGTGGTCCGAGTTGGGACCAAGAAAACATCTTTTGTCAACTTCACTGACATCTGTAAACTCTTGCATCGACAGCCCAAACATCTTTTGGCCTTCCTGTTAGCCGAGTTGGGAACGAGTGGATCCATAGATGGAAACAACCAGCTTGTTATCAAGGGACGCTTTCAACAGAAACAAATAGAAAATGTCTTGAGAAGATACATAAaggAATATGTGACTTGTCACACTTGCCGCTCACCCGATACAATTCTGCAGAAGGACACACGTCTCTACTTCCTGCAATGTGAAACCTGTCACTCGCGCTGCTCTGTAGCCAGCATCAAGACCGGCTTCCAGGCCGTCACCGGCAAGAGAGCCCAGCTTCGAGCCAAAGCCAACTAACACAAGCGTCCTGTCCCGGCCTCTTCCCCAGACTGATGCTCTGCCCCTCTGGTTGACGACTGTCCTCGTTGCTCTCCTCTGAAGCGCAGGGACCCACGGCTCGGAGTGAACTGTGGAGGTTTTTTGAGCATCATCTCTATTAATAAATCTGACTCTGAAGCTAGAAGGCTCGCAAACAGGCTGCCTCTGATTTGCTTGTCTTTctccagaattttttttccccgtgCATTTAGCATACCTGATAACCAGAGCATATGTCTATTTGATATACTTTCAGAtcagtatttgtttttctgaaaaaatacAGGGATATTATTggatggaaaatgaaaataatttcgCAAAATGAACCGCAGCCTTTTATATGGGACTTTGTTTTATCGAAGGAAAACCGAATCTCTTAGTCACTGACGGTCAATGCACAGGAATGCAAGGATGGACTGGATCCAAGCGAGTGTTTCGTGATCCAGTGAATCTCCTCCGATCTCTAGAAAATGAGAACATGTAATTACACAGATTACAGATTGCACTGATTTCTTCGGTAGAATATTGGGCAGCAGATGTTTGGGCATGTTTGCAGTGCTTAGATGGAACTGAAAGCTTTTTGTTGGCATATTtgaaattggatttttttttttttttttttaaataaaaacaatgactaAAGGTT

Function

symbol description
eif2s2 Predicted to enable mRNA binding activity; translation initiation factor activity; and translation initiation factor binding activity. Predicted to be involved in formation of cytoplasmic translation initiation complex and formation of translation preinitiation complex. Predicted to act upstream of or within translational initiation. Predicted to be part of eukaryotic translation initiation factor 2 complex. Orthologous to human EIF2S2 (eukaryotic translation initiation factor 2 subunit beta).

NR:

description
PREDICTED: eukaryotic translation initiation factor 2 subunit 2-like

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03238 EIF2S2; translation initiation factor 2 subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247019.1 True 1799 mRNA 0.46 9 20460129 20464209

Neighbor

gene id symbol gene type direction distance location
ywhabb ywhabb,LOC107702878,LOC107573968,LOC107756849,LOC107691552,LOC103023259 coding downstream 1101 20454630 ~ 20459028 (-)
LOC122351134 NA coding downstream 6998 20453031 ~ 20453131 (-)
mak16 mak16,LOC107591933,LOC107756848,LOC107566970,LOC107702820,LOC107722986,LOC107691589 coding downstream 18221 20439262 ~ 20441908 (-)
LOC122350835 LOC107691561,LOC107756843,LOC107566957 coding downstream 99959 20356650 ~ 20360170 (-)
LOC122350834 LOC107756820,LOC107691590,LOC107591940 coding downstream 103602 20352522 ~ 20356527 (-)
chmp4bb chmp4bb,LOC107756851,LOC107691553,LOC107702881,LOC107566963,LOC107573971 coding upstream 1689 20465898 ~ 20468905 (-)
adgrd2 LOC107721081,LOC107678382,LOC107563844,LOC107570012,LOC107714589 coding upstream 128256 20592465 ~ 20614297 (-)
bcl2l16 bcl2l16,LOC107714610,LOC107556213,LOC107698085,LOC107721090,LOC107678407 coding upstream 197960 20662169 ~ 20664529 (-)
si:dkey-90l8.3 si:dkey-90l8.3,LOC107714563,LOC107698086,LOC107556214,LOC107563853,LOC103024553,LOC108426648,LOC108264996 coding upstream 226621 20690830 ~ 20696690 (-)
ccn1l2 LOC107698087,LOC107556215,LOC107563854,LOC107678465,LOC107714581,LOC107721104 coding upstream 235814 20700023 ~ 20707196 (-)
LOC122350542 rsph14,LOC107756838,LOC107691565,LOC107702819,LOC107723028 non-coding downstream 175289 20281582 ~ 20284840 (-)
G65613 LOC107756819,LOC107723069,LOC107578151,LOC107571958 non-coding downstream 293757 20166056 ~ 20166372 (-)
LOC122350956 NA non-coding downstream 319929 20136603 ~ 20140200 (-)
G65596 adamts13,LOC107725310,LOC107548275,LOC107702807 non-coding downstream 356129 20103337 ~ 20104000 (-)
LOC122349935 NA non-coding downstream 715479 19708097 ~ 19744650 (-)
G65682 NA non-coding upstream 342 20464551 ~ 20464756 (-)
LOC122349883 NA non-coding upstream 27640 20491849 ~ 20505973 (-)
G65696 nr6a1a,nr6a1,LOC107721088,LOC107698081 non-coding upstream 95422 20559631 ~ 20559971 (-)
G65697 NA non-coding upstream 102949 20567158 ~ 20570293 (-)
G65704 NA non-coding upstream 146353 20610562 ~ 20610923 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other downstream 38833 20415065 ~ 20421296 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other downstream 325784 20118007 ~ 20134345 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other downstream 1026838 19428738 ~ 19433291 (-)
LOC122351133 NA other downstream 1257752 19202277 ~ 19202377 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other downstream 1412160 19023713 ~ 19047969 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other upstream 254731 20718940 ~ 20723155 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other upstream 550784 21014993 ~ 21025831 (-)
G66086 si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 other upstream 1307259 21771468 ~ 21776620 (-)
G66090 NA other upstream 1320495 21784704 ~ 22254189 (-)
G66119 gfpt1,LOC107710818,LOC107752562,LOC107678434,LOC102792631 other upstream 1549764 22013973 ~ 22025791 (-)

Expression


Co-expression Network