ywhabb (ywhabb,LOC107702878,LOC107573968,LOC107756849,LOC107691552,LOC103023259)


Basic Information

Item Value
gene id ywhabb
gene name ywhabb,LOC107702878,LOC107573968,LOC107756849,LOC107691552,LOC103023259
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20454630 ~ 20459028 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247020.1
ttcaggcGGTGGGAACGGTTTGCAGGAAGCGGAAGTGTCACTAAGCGGAAGAGGTACTGCCCAGAACAACCGAAGAGCGAGGCGGAGGACGGGGACCCGATTTGTGTCTTTTTAACGATTAAAGTCAGACTAAACGCCGTTCACAACTCTAAAAATGGACAAGAGTGACCTGGTGCAGAAAGCCAAGCTCGCCGAACAGGCCGGGCGCTACGATGATATGGCAGGAGCCATGAAGTCCGTTACCGAGGGCGGCGTGGAGCTTTCCAACGAAGAGCGCAACCTGCTGTCTGTGGCGTACAAGAACGTGGTGGGCGCCCGCCGCTCCTCCTGGCGCGTGATCTCCAGCATCGAGCAGAAGACCGAGGGGAACGAGAAGAAGCAACAGATGGCGCGCGAGTATCGTGAAAAGATCGAGAACGAACTGCAGGACATCTGCAATGATGTGCTGGGTCTTTTGGAGAAGTTCCTCATTCCCAATGCTTCTCAGGCAGAGAGCAAGGTGTTTTACCTGAAAATGAAAGGCGATTACTATAGATACTTATCTGAGGTTGCATCTGGAGAATCCAAGACCACCACGGTTGAGAATTCTCAGAAAGCTTATCAAGATGCTTTTGAGATAAGCAAGAAGGAAATGCAGCCCACACACCCTATACGGTTGGGTCTTGCCCTCAACTTTTCCGTTTTTTACTACGAGATCCTCAACTCTCCTGAGAACGCCTGTCACCTCGCTAAGACGGCTTTTGATGAAGCCATTGCTGAGCTTGACACTTTAAACGAGGACTCCTACAAAGACAGCACCTTGATCATGCAGCTTCTAAGGGACAACCTCACTCTTTGGACGTCAGAAAACCAGGGCGAAGAAGCAGGCGACAACGAGAACTAGGGGAGCCGCGCTGATCCccaaacacccacacacatccACCTTAAATACACAAATGGCTTCCACCGACCCTCCCACCTCATTCCACCCTACAGCACCCGCCCCTCTCCATCCAGTTCCCAGCCCCGCTCCCCTATACCTGTACCATATGATGATCAGCACCCGCAGGAAGACGCTCGGCGAAGCCCCCGTGGCTGGGAGGGGGGTGGGGGTGGCTCACAGGGTGACATGCTGACATTAGAGCAGGTCCACTcattttgtttgtgaatttaacGTGTACTGATTATCAAACCCTGTCCTTTATGCATGTCTGAGTGactgtaagagtgtgtgtgctgCTAACGGAgagtaacagtgtgtgtgtgtgtgtgtgtgtgtttgaaagtgagagtgagtgtaTTGGGGATCGGGGGTTGTGAACTCTAATCGTCCTTCCTGATAATTCCCTTTGTTCCACTTTAGCTGGTTGTGCATTTTTcatcctccttttttttttttttttttttttttgttacgatcatattttttttagtataattCATCGGTATTTACAGGTTTTATTGTATGGTTATTAAACTGGCAGTTTATTTTCACCAAATACAGAGTATGTCTGA

Function

symbol description
ywhabb Predicted to be located in cytoplasm. Is expressed in several structures, including immature eye; liver and biliary system; nervous system; otic vesicle; and tail bud. Orthologous to human YWHAB (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta).

NR:

description
PREDICTED: 14-3-3 protein beta/alpha-B-like isoform X1

GO:

id name namespace
GO:0006911 phagocytosis, engulfment biological_process
GO:0005737 cytoplasm cellular_component
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K16197 YWHAB_Q_Z; 14-3-3 protein beta/theta/zeta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247020.1 True 1494 mRNA 0.49 6 20454630 20459028

Neighbor

gene id symbol gene type direction distance location
LOC122351134 NA coding downstream 1499 20453031 ~ 20453131 (-)
mak16 mak16,LOC107591933,LOC107756848,LOC107566970,LOC107702820,LOC107722986,LOC107691589 coding downstream 12722 20439262 ~ 20441908 (-)
LOC122350835 LOC107691561,LOC107756843,LOC107566957 coding downstream 94460 20356650 ~ 20360170 (-)
LOC122350834 LOC107756820,LOC107691590,LOC107591940 coding downstream 98103 20352522 ~ 20356527 (-)
lsm1 lsm1,LOC107571959,LOC107548281 coding downstream 185214 20266843 ~ 20269416 (-)
LOC122350494 eif2s2,if2b,LOC107566961,LOC107756850,LOC107739644,LOC107691551,LOC107573966 coding upstream 1101 20460129 ~ 20464209 (-)
chmp4bb chmp4bb,LOC107756851,LOC107691553,LOC107702881,LOC107566963,LOC107573971 coding upstream 6870 20465898 ~ 20468905 (-)
adgrd2 LOC107721081,LOC107678382,LOC107563844,LOC107570012,LOC107714589 coding upstream 133437 20592465 ~ 20614297 (-)
bcl2l16 bcl2l16,LOC107714610,LOC107556213,LOC107698085,LOC107721090,LOC107678407 coding upstream 203141 20662169 ~ 20664529 (-)
si:dkey-90l8.3 si:dkey-90l8.3,LOC107714563,LOC107698086,LOC107556214,LOC107563853,LOC103024553,LOC108426648,LOC108264996 coding upstream 231802 20690830 ~ 20696690 (-)
LOC122350542 rsph14,LOC107756838,LOC107691565,LOC107702819,LOC107723028 non-coding downstream 169790 20281582 ~ 20284840 (-)
G65613 LOC107756819,LOC107723069,LOC107578151,LOC107571958 non-coding downstream 288258 20166056 ~ 20166372 (-)
LOC122350956 NA non-coding downstream 314430 20136603 ~ 20140200 (-)
G65596 adamts13,LOC107725310,LOC107548275,LOC107702807 non-coding downstream 350630 20103337 ~ 20104000 (-)
LOC122349935 NA non-coding downstream 709980 19708097 ~ 19744650 (-)
G65682 NA non-coding upstream 5523 20464551 ~ 20464756 (-)
LOC122349883 NA non-coding upstream 32821 20491849 ~ 20505973 (-)
G65696 nr6a1a,nr6a1,LOC107721088,LOC107698081 non-coding upstream 100603 20559631 ~ 20559971 (-)
G65697 NA non-coding upstream 108130 20567158 ~ 20570293 (-)
G65704 NA non-coding upstream 151534 20610562 ~ 20610923 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other downstream 33334 20415065 ~ 20421296 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other downstream 320285 20118007 ~ 20134345 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other downstream 1021339 19428738 ~ 19433291 (-)
LOC122351133 NA other downstream 1252253 19202277 ~ 19202377 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other downstream 1406661 19023713 ~ 19047969 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other upstream 259912 20718940 ~ 20723155 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other upstream 555965 21014993 ~ 21025831 (-)
G66086 si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 other upstream 1312440 21771468 ~ 21776620 (-)
G66090 NA other upstream 1325676 21784704 ~ 22254189 (-)
G66119 gfpt1,LOC107710818,LOC107752562,LOC107678434,LOC102792631 other upstream 1554945 22013973 ~ 22025791 (-)

Expression


Co-expression Network