si:dkeyp-117b11.1 (LOC107670989,LOC107657213,LOC107754414,LOC107722857,LOC107560032,LOC107559594,LOC107559561)


Basic Information

Item Value
gene id si:dkeyp-117b11.1
gene name LOC107670989,LOC107657213,LOC107754414,LOC107722857,LOC107560032,LOC107559594,LOC107559561
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1927729 ~ 1936872 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247048.1
CAaatactcaaacacacacacacacgcacctccGGCACGCTACTTACTGGACTCGCATTCAAAGTTCTGGGGTATTTGCATCCAAACCTCACAGCGAAGAGCTTCCTGATGAACTGAGCGCCTCCTGCATCATGagTTTCTTTGGGAAGTTGAAACCATCTCTACTACACAGTGGGCCACCAGCTCCACCCAGGAGAACAGATAACAGTTCAGGATATGGCTGGCCAGAAGGGGAATTTGACGATGAAGATGGTGATACATATGAAGCTCCACCATGCGAACGTCCCACCGTTAAAGTCCAGCCGCGTCAAGTAGAGGAGAATGTTTACCTGGGTTATCCGGATCGAAACCCAAACCCTGTTATTCCCAAAAGACAGGCGGCACCACCGCCACggccggccaagatcacacccaAAAGCGTGAAGCCAGAACCGGCCCCCGACCCCGAGGAGTTTTACATCGACCCCAATGATAGCAAACCTCCTGAGGTAATACGTAAAGACAAACCTGGTAAAAAAGCCCCACCTAAGAGACCCCCGATGAGACCTCCACCGGCCCCTCAGCAAGACGAAGATGTTTACTTGGACCCAAATGAAGGACAGGATGAAGATACCTATCTCGAACCTGTAGCAGAACCTCCTGCGCCCCGAAGCCAGGCCCGTATACTACTGCCTCCTAAAAATGTAGGACGAGACCCGCCACCACAAATAATGAAACCTCCTGTTCCCAGAGCCAAGTCTAGTTCGGTCCTGATCGGTGACCCTGTGAACAAAGTTATGCCGCCGGAAGTCAAACGTGCCACGTTTTCTGGCCAGATGCCACCCGCACTAAACAGCAAAGCGGTTCCTCCCATCATCCTCCCCAAAGAACCCAAACCCAGtcctcctcctcctcctcctccatctctgGACGGCTCAGCGCTTTCTTTTGGAGCAAAGCCAGCCGCTCAGGAGGCGGGGCTGGAGGACCAAGAGTGGTTCGCTGGAGCTTGTGAACGTAAGACTGCAGAGGAAGCCGTGTTCAGGATTAAGAAGgACGGCACGTTTCTGGTGAGATACAGCAGCTCTCAGAACGACCGGCAGCCCTTCACGCTGGTCGTGTTTTACCGGCAGAACGTCTACAACATCCCCGTGCGCTTCCTGGAGGATTCACAGCAGTACGCGCTCGGGAAAGAGGGCAAGAAGACGGAAGAGCTCTTCAGCAGTTTGCAGGAGATGATCTGTCATCACACGAAGAACCCCATCCTCCTGATCGACCGTAAGAGTCAGGCTAAACACAGCACTCACCTCTCTCACCCCGTTCGGCCCTAACACCCCGTCCTGCTCTCTTCAAGCTCCTCCGCCTCACTCTCTGACAGAGTTATTTATTACGTTATGTTTGTAGCGCAGTCTGATGTTTATCTTGTGTCTCGTGTTCAGTGCATTTCACGTCTGGGGATTTTAGAGTATGGTGACTTATGTAGTGTTCATTGAATGACTTCAGTTAAActctacacatatatatatatatatataatgtttacaGGACAACTTGTTGTCTCGGtgtaaaatacttaataaataaagataaaaagaacacttga

Function

NR:

description
PREDICTED: B-cell linker protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247048.1 True 1582 mRNA 0.51 19 1927729 1936872

Neighbor

gene id symbol gene type direction distance location
cltcl1 LOC107559593,LOC107670971,LOC108412499 coding downstream 1007 1880738 ~ 1926722 (-)
si:dkey-178e17.1 slc25a1,LOC107754397,LOC107670994,LOC107657208,LOC107722854,LOC108412497 coding downstream 48830 1857920 ~ 1878899 (-)
si:dkey-178e17.3 LOC107754395,LOC107671045,LOC107657210,LOC107722861 coding downstream 75190 1837123 ~ 1852539 (-)
LOC122350661 NA coding downstream 150255 1771982 ~ 1777474 (-)
LOC122349997 NA coding downstream 213508 1710358 ~ 1714221 (-)
plat plat,LOC107754398,LOC107657211,LOC107671043 coding upstream 10269 1947141 ~ 1965053 (-)
vdac3 vdac3,LOC107754399,LOC107671013,LOC107560056 coding upstream 59678 1996550 ~ 2008100 (-)
rpl6 LOC107699672,LOC107671003,LOC107559598 coding upstream 104682 2041554 ~ 2044605 (-)
acaa2 acaa2,LOC107671002 coding upstream 109244 2046116 ~ 2055183 (-)
seta seta,LOC107699670,LOC107752982,LOC107754404,LOC107560061,LOC107671021 coding upstream 135017 2071889 ~ 2075596 (-)
G60237 NA non-coding downstream 77796 1849488 ~ 1849933 (-)
G60204 NA non-coding downstream 147376 1726225 ~ 1780353 (-)
LOC122349999 NA non-coding downstream 162186 1717401 ~ 1765543 (-)
G60207 NA non-coding downstream 232909 1674474 ~ 1694820 (-)
G60214 NA non-coding downstream 243689 1673516 ~ 1684040 (-)
G60471 NA non-coding upstream 50901 1987773 ~ 1988553 (-)
G60473 NA non-coding upstream 54463 1991335 ~ 1994745 (-)
G60487 dynll1,dyl1,LOC107559583,LOC100698873 non-coding upstream 100828 2037700 ~ 2039825 (-)
G60510 NA non-coding upstream 187186 2124058 ~ 2124341 (-)
G60519 NA non-coding upstream 230060 2166932 ~ 2168247 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other downstream 106079 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other downstream 165180 1749062 ~ 1762549 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other downstream 321120 1561546 ~ 1606609 (-)
G60220 NA other downstream 347113 1576805 ~ 1580616 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other downstream 570776 1349171 ~ 1356953 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other upstream 122522 2059394 ~ 2061481 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other upstream 194497 2131369 ~ 2162003 (-)
G60564 pxnb other upstream 524059 2460931 ~ 2464371 (-)
bicdl1 bicdl1,LOC107553048 other upstream 584342 2521214 ~ 2552187 (-)
rad9b LOC105891618,LOC107713043,LOC107671006,LOC107552191,LOC107714555 other upstream 845748 2782620 ~ 2823826 (-)

Expression


Co-expression Network