plat (plat,LOC107754398,LOC107657211,LOC107671043)


Basic Information

Item Value
gene id plat
gene name plat,LOC107754398,LOC107657211,LOC107671043
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1947141 ~ 1965053 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247053.1
TTAATAGACTAACAGATGAAATTAGACGGAAGgaacattttcttgttttctgccGATGAAGCATCTCATAATTATCAAAAACAGCTTgttggCGGGTGCGTGTCGCATCACCGATCTCGCGCGCCGCTCGGACCGCCCCGCGCCGGAATCGTCGCCACCGGGATAAATATCCCGCGAGCCGCGAGCTGGGGCGCAGAGCGGCGGAGGAGACGCTTCGGCTTGGATTTAGACGCGTCGGAGCGAAGAGGAAGCGGAGTACAGAGCGCTCGTTTCGAGAGgagtTTAAAGAGAAGCCTTCAGGTCAACATGAATTTATTGCTAAACCTGCTGTTGCTGCTTTTTGCTCTGTGCTGTGCTGCAGATCCcaaaGTGTTCAGTATCAGACAGAAGAGAGGCACACGCACATATAGAGacgcTTGTGTGGAAGCTAATTCAGCCGCGGTCAGAGACATCGGGATGACGTGGCTGCGATGGAAGGGTCAGAAAGTTGAATTCTGCCGCTGCGCTGTTCGAGCAAGAACACGCTGTCACGAGATACCGGTGACCAaatgCTTTGTGTCTAAGTGTTATAATGGAGGGACGTGTAAAGAAGCCGTTTACTCCAATGACTTCATCTGCCAGTGTCCTCCTGGGTTTACAGGCACTCAGTGTGAAATCAGCACAACTGAGCGGTGTTCCAGGGGTCAGGGGTCGGGTTACCGTGGCACCTCGAGCATGAGTGTGTCAGGACTGGAGTGTATTAACTGGAATTCCAGCTCACTCCGAGGGAAGAAGTTCACCGCCAAGAGACCAGAGGCAAACAGTCTGGGACTGGGAAATCACAACTACTGCAGGAATCCAGACGGAGACTCTAAACCCTGGTGTTACGTTTATAAAAAGGCTCAGATCACGTGGGAGTTCTGCTCTTTACCGACCTGCGCCATCGACCCCTACCTAGAGTGCACACGGGGGTCCGGTCAGACCTACAGAGGGACGAAAGCCGTCACCCGCAGCGGTTTGAAGTGTCTGTCGTGGGATTCACCTGCAGTGTCTCGAAAGATCTACAACGCATGGAGGTCGGACGCCGGGCAGATCGGCATCGGAAGCCACAACTTCTGCAGGAACCCAGACGGTGACCTCGGCCCCTGGTGTCACGTCTATAAAGGCTCTCAGTTGACCTGGGAGCTCTGTGACGTCCCTAAGTGTCCGAGGAAAACTCCGTCAATCACCACACACGGGCCGCGGGCCCCGATAACCACCAGCAATCAAGGTTCCTGCGGTCAGCGCGTGGAAGCTCCTTCAAACTCCCTGCCGACGTTCAGGATCCGTGGAGGTCAGGTCAGCGACATCAGAGAGCAGCCGTGGCAGGCCGCCATCACCGTCTATCTGCCCCGAGCCAAATCATACAACTTCCTCTGTGGAGGCGTCCTCATCGACTCCTGCTGGATCCTCTCTGCCGCTCACTGCTTCCaggagagATTTGAGGAGAATCGTCTTCGAGTGGTTCTGGGTCGAACCTTCAGGCTTCAGAACTCCAGCAGCGAGCAGATCTTTGACGTGGAGAAATACTGGATCCACGAGCAGTACGACGACGAGACGTATGACAACGATATCGCACTGCTCAAGTTAAAGAGCGAGAGCGGTATCTGTGCCGTTCACTCTCCAGAAGTCCTTCCCGCGTGTTTACCTGAACCTAACCTGGTCTTACCGGACTGGACGGAGTGTGAGATCTCTGGTTACGGGAAAGAGGAAGAGTTTTCTCCGTTTTACTCGGAGAGAATTAAGCGAGGTCTGGTGCGCCTGTGGCCGCAGGAACAGTGTGTCCCGGAGAAGCTGGCCGGTCGTCTGGTGACCCCAAACATGCTGTGCGCCGGAGACACGCGGGGCCTGGACGACGCCTGCAAGGGGGATTCCGGCGGTCCTCTGGTGTGTCCCAAAAACGGAAGGATGACTCTGATGGGTTTGATCAGCTGGGGCGACGGCTGCGGGAAGAAAGACACGCCTGGCGTTTACACGCGGGTCACAAACTACACAAACTGGATCTCCAGCAAGATGAGAGCGAACTGAAGCACAAACGAACGGCATTCCCACAAAACGCAGCCGACGACTGGGGGAAAGGGCCGACCTCCACACCTACTGGACTCTATCTTTGGGGGTTTGAGGAGGAGACGTGGAAATACGACGAATGCTGTGAGCCGGTGATTGTAGATCATGTTGCACACGGGATGAGAAATCCGACTCCAAAGAACGCTTTTAATTCACAACACACAACGCGGCCTTCGATTTGCAAAAGGACAACATGAGAAACGCACGATAACGGGTGCTAACTCTGATGCACAAGGTCTATTAGaagtaaaattgttttttttaatgatagcGGATTTAGAGGCacttttgctttgcttttaaatagtaaagaTGTGAGCGAGCGGCTGATGGCACTTTTGAATGTTACGTGATGCTtgttaaatcataattatttttaacactaaGCATCTGCTGGGTCAGAGCGACGTTGGTTTTGGTTAGTGTTGATCTAAACGCATTCATTTGACTGTATTTAATACGACTTGTTTTTGACTGCAAATTGTCTTTAGCATCCCAGATCTAATATTATTACAGGCTTTAGATCTTGGGATGCAtattaagttaatatttaactatttaacatCTTTTATACACTTTTTGTACACATGAGCAGCTAGTgctaaattattgattttatacgGTTAACGCTTGTATGTTATTTTCGCCTGACATTTTATAAAACGTGAAATGGAAACTGTTCTTTGTCTTCTTTATGAAAGTGTTCATTGCAGATTCAGGAGATGATTATATGTTTTGTAGCGAGTGCTTTGTGAATTCACACTGTCGATTTAGTCAAACTGGATAACGGGTGAGCGATTTCAGGAAAAACTGCGAAacagttacaaaataaaagtcatttcagaga
>XM_043247054.1
TTAATAGACTAACAGATGAAATTAGACGGAAGgaacattttcttgttttctgccGATGAAGCATCTCATAATTATCAAAAACAGCTTgttggCGGGTGCGTGTCGCATCACCGATCTCGCGCGCCGCTCGGACCGCCCCGCGCCGGAATCGTCGCCACCGGGATAAATATCCCGCGAGCCGCGAGCTGGGGCGCAGAGCGGCGGAGGAGACGCTTCGGCTTGGATTTAGACGCGTCGGAGCGAAGAGGAAGCGGAGTACAGAGCGCTCGTTTCGAGAGgagtTTAAAGAGAAGCCTTCAGGTCAACATGAATTTATTGCTAAACCTGCTGTTGCTGCTTTTTGCTCTGTGCTGTGCTGCAGATCCcaaaGTGTTCAGTATCAGACAGAAGAGAGGCACACGCACATATAGAGaatgCTTTGTGTCTAAGTGTTATAATGGAGGGACGTGTAAAGAAGCCGTTTACTCCAATGACTTCATCTGCCAGTGTCCTCCTGGGTTTACAGGCACTCAGTGTGAAATCAGCACAACTGAGCGGTGTTCCAGGGGTCAGGGGTCGGGTTACCGTGGCACCTCGAGCATGAGTGTGTCAGGACTGGAGTGTATTAACTGGAATTCCAGCTCACTCCGAGGGAAGAAGTTCACCGCCAAGAGACCAGAGGCAAACAGTCTGGGACTGGGAAATCACAACTACTGCAGGAATCCAGACGGAGACTCTAAACCCTGGTGTTACGTTTATAAAAAGGCTCAGATCACGTGGGAGTTCTGCTCTTTACCGACCTGCGCCATCGACCCCTACCTAGAGTGCACACGGGGGTCCGGTCAGACCTACAGAGGGACGAAAGCCGTCACCCGCAGCGGTTTGAAGTGTCTGTCGTGGGATTCACCTGCAGTGTCTCGAAAGATCTACAACGCATGGAGGTCGGACGCCGGGCAGATCGGCATCGGAAGCCACAACTTCTGCAGGAACCCAGACGGTGACCTCGGCCCCTGGTGTCACGTCTATAAAGGCTCTCAGTTGACCTGGGAGCTCTGTGACGTCCCTAAGTGTCCGAGGAAAACTCCGTCAATCACCACACACGGGCCGCGGGCCCCGATAACCACCAGCAATCAAGGTTCCTGCGGTCAGCGCGTGGAAGCTCCTTCAAACTCCCTGCCGACGTTCAGGATCCGTGGAGGTCAGGTCAGCGACATCAGAGAGCAGCCGTGGCAGGCCGCCATCACCGTCTATCTGCCCCGAGCCAAATCATACAACTTCCTCTGTGGAGGCGTCCTCATCGACTCCTGCTGGATCCTCTCTGCCGCTCACTGCTTCCaggagagATTTGAGGAGAATCGTCTTCGAGTGGTTCTGGGTCGAACCTTCAGGCTTCAGAACTCCAGCAGCGAGCAGATCTTTGACGTGGAGAAATACTGGATCCACGAGCAGTACGACGACGAGACGTATGACAACGATATCGCACTGCTCAAGTTAAAGAGCGAGAGCGGTATCTGTGCCGTTCACTCTCCAGAAGTCCTTCCCGCGTGTTTACCTGAACCTAACCTGGTCTTACCGGACTGGACGGAGTGTGAGATCTCTGGTTACGGGAAAGAGGAAGAGTTTTCTCCGTTTTACTCGGAGAGAATTAAGCGAGGTCTGGTGCGCCTGTGGCCGCAGGAACAGTGTGTCCCGGAGAAGCTGGCCGGTCGTCTGGTGACCCCAAACATGCTGTGCGCCGGAGACACGCGGGGCCTGGACGACGCCTGCAAGGGGGATTCCGGCGGTCCTCTGGTGTGTCCCAAAAACGGAAGGATGACTCTGATGGGTTTGATCAGCTGGGGCGACGGCTGCGGGAAGAAAGACACGCCTGGCGTTTACACGCGGGTCACAAACTACACAAACTGGATCTCCAGCAAGATGAGAGCGAACTGAAGCACAAACGAACGGCATTCCCACAAAACGCAGCCGACGACTGGGGGAAAGGGCCGACCTCCACACCTACTGGACTCTATCTTTGGGGGTTTGAGGAGGAGACGTGGAAATACGACGAATGCTGTGAGCCGGTGATTGTAGATCATGTTGCACACGGGATGAGAAATCCGACTCCAAAGAACGCTTTTAATTCACAACACACAACGCGGCCTTCGATTTGCAAAAGGACAACATGAGAAACGCACGATAACGGGTGCTAACTCTGATGCACAAGGTCTATTAGaagtaaaattgttttttttaatgatagcGGATTTAGAGGCacttttgctttgcttttaaatagtaaagaTGTGAGCGAGCGGCTGATGGCACTTTTGAATGTTACGTGATGCTtgttaaatcataattatttttaacactaaGCATCTGCTGGGTCAGAGCGACGTTGGTTTTGGTTAGTGTTGATCTAAACGCATTCATTTGACTGTATTTAATACGACTTGTTTTTGACTGCAAATTGTCTTTAGCATCCCAGATCTAATATTATTACAGGCTTTAGATCTTGGGATGCAtattaagttaatatttaactatttaacatCTTTTATACACTTTTTGTACACATGAGCAGCTAGTgctaaattattgattttatacgGTTAACGCTTGTATGTTATTTTCGCCTGACATTTTATAAAACGTGAAATGGAAACTGTTCTTTGTCTTCTTTATGAAAGTGTTCATTGCAGATTCAGGAGATGATTATATGTTTTGTAGCGAGTGCTTTGTGAATTCACACTGTCGATTTAGTCAAACTGGATAACGGGTGAGCGATTTCAGGAAAAACTGCGAAacagttacaaaataaaagtcatttcagaga
>XM_043247056.1
GAACTTGGAAGACAGGATCGACATAAAAGTTTACCGACAAAAAGTGCTCAAGTTGCGtttgaaaagtcaaaaatactCTTAAGCTTGCGACCGAAGAGGCTAGATGACAAAATACTCGAGTTCGAGGTTTAACTTTAAAGATATAAATGCTCCTGAGACGTTTGTTTTGCTCTTAAGATTAAGGAAGTTTGCCTTCGGAAATCCACGGGTTTGAGATCGAAGAAGGTTGTAGACAGAATGCTCGTGGAATGAGGTTGTTTCCAGCCCGTGGTTTTACACGCATGTGActcagaaagagagagtgcGCACTGACTCACGAGAGCCGCTTCGCGTCGTGAATGAGGTCAAATATTAAGGATGCCAAAGACGGAAAAGGAAGGAAAAGGGAGTCTGAGGGAGAAAGAAAAGCGGGTGAGGTTTCGCAGCAGCGTCCTTCTGCAGACGCTCGGCTCGGCATCAGgagtTTAAAGAGAAGCCTTCAGGTCAACATGAATTTATTGCTAAACCTGCTGTTGCTGCTTTTTGCTCTGTGCTGTGCTGCAGATCCcaaaGTGTTCAGTATCAGACAGAAGAGAGGCACACGCACATATAGAGacgcTTGTGTGGAAGCTAATTCAGCCGCGGTCAGAGACATCGGGATGACGTGGCTGCGATGGAAGGGTCAGAAAGTTGAATTCTGCCGCTGCGCTGTTCGAGCAAGAACACGCTGTCACGAGATACCGGTGACCAaatgCTTTGTGTCTAAGTGTTATAATGGAGGGACGTGTAAAGAAGCCGTTTACTCCAATGACTTCATCTGCCAGTGTCCTCCTGGGTTTACAGGCACTCAGTGTGAAATCAGCACAACTGAGCGGTGTTCCAGGGGTCAGGGGTCGGGTTACCGTGGCACCTCGAGCATGAGTGTGTCAGGACTGGAGTGTATTAACTGGAATTCCAGCTCACTCCGAGGGAAGAAGTTCACCGCCAAGAGACCAGAGGCAAACAGTCTGGGACTGGGAAATCACAACTACTGCAGGAATCCAGACGGAGACTCTAAACCCTGGTGTTACGTTTATAAAAAGGCTCAGATCACGTGGGAGTTCTGCTCTTTACCGACCTGCGCCATCGACCCCTACCTAGAGTGCACACGGGGGTCCGGTCAGACCTACAGAGGGACGAAAGCCGTCACCCGCAGCGGTTTGAAGTGTCTGTCGTGGGATTCACCTGCAGTGTCTCGAAAGATCTACAACGCATGGAGGTCGGACGCCGGGCAGATCGGCATCGGAAGCCACAACTTCTGCAGGAACCCAGACGGTGACCTCGGCCCCTGGTGTCACGTCTATAAAGGCTCTCAGTTGACCTGGGAGCTCTGTGACGTCCCTAAGTGTCCGAGGAAAACTCCGTCAATCACCACACACGGGCCGCGGGCCCCGATAACCACCAGCAATCAAGGTTCCTGCGGTCAGCGCGTGGAAGCTCCTTCAAACTCCCTGCCGACGTTCAGGATCCGTGGAGGTCAGGTCAGCGACATCAGAGAGCAGCCGTGGCAGGCCGCCATCACCGTCTATCTGCCCCGAGCCAAATCATACAACTTCCTCTGTGGAGGCGTCCTCATCGACTCCTGCTGGATCCTCTCTGCCGCTCACTGCTTCCaggagagATTTGAGGAGAATCGTCTTCGAGTGGTTCTGGGTCGAACCTTCAGGCTTCAGAACTCCAGCAGCGAGCAGATCTTTGACGTGGAGAAATACTGGATCCACGAGCAGTACGACGACGAGACGTATGACAACGATATCGCACTGCTCAAGTTAAAGAGCGAGAGCGGTATCTGTGCCGTTCACTCTCCAGAAGTCCTTCCCGCGTGTTTACCTGAACCTAACCTGGTCTTACCGGACTGGACGGAGTGTGAGATCTCTGGTTACGGGAAAGAGGAAGAGTTTTCTCCGTTTTACTCGGAGAGAATTAAGCGAGGTCTGGTGCGCCTGTGGCCGCAGGAACAGTGTGTCCCGGAGAAGCTGGCCGGTCGTCTGGTGACCCCAAACATGCTGTGCGCCGGAGACACGCGGGGCCTGGACGACGCCTGCAAGGGGGATTCCGGCGGTCCTCTGGTGTGTCCCAAAAACGGAAGGATGACTCTGATGGGTTTGATCAGCTGGGGCGACGGCTGCGGGAAGAAAGACACGCCTGGCGTTTACACGCGGGTCACAAACTACACAAACTGGATCTCCAGCAAGATGAGAGCGAACTGAAGCACAAACGAACGGCATTCCCACAAAACGCAGCCGACGACTGGGGGAAAGGGCCGACCTCCACACCTACTGGACTCTATCTTTGGGGGTTTGAGGAGGAGACGTGGAAATACGACGAATGCTGTGAGCCGGTGATTGTAGATCATGTTGCACACGGGATGAGAAATCCGACTCCAAAGAACGCTTTTAATTCACAACACACAACGCGGCCTTCGATTTGCAAAAGGACAACATGAGAAACGCACGATAACGGGTGCTAACTCTGATGCACAAGGTCTATTAGaagtaaaattgttttttttaatgatagcGGATTTAGAGGCacttttgctttgcttttaaatagtaaagaTGTGAGCGAGCGGCTGATGGCACTTTTGAATGTTACGTGATGCTtgttaaatcataattatttttaacactaaGCATCTGCTGGGTCAGAGCGACGTTGGTTTTGGTTAGTGTTGATCTAAACGCATTCATTTGACTGTATTTAATACGACTTGTTTTTGACTGCAAATTGTCTTTAGCATCCCAGATCTAATATTATTACAGGCTTTAGATCTTGGGATGCAtattaagttaatatttaactatttaacatCTTTTATACACTTTTTGTACACATGAGCAGCTAGTgctaaattattgattttatacgGTTAACGCTTGTATGTTATTTTCGCCTGACATTTTATAAAACGTGAAATGGAAACTGTTCTTTGTCTTCTTTATGAAAGTGTTCATTGCAGATTCAGGAGATGATTATATGTTTTGTAGCGAGTGCTTTGTGAATTCACACTGTCGATTTAGTCAAACTGGATAACGGGTGAGCGATTTCAGGAAAAACTGCGAAacagttacaaaataaaagtcatttcagaga

Function

symbol description
plat Predicted to enable serine-type endopeptidase activity. Predicted to be involved in plasminogen activation and smooth muscle cell migration. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in ovarian follicle. Human ortholog(s) of this gene implicated in several diseases, including antiphospholipid syndrome; diabetic angiopathy; factor VIII deficiency; osteonecrosis; and thrombophilia (multiple). Orthologous to human PLAT (plasminogen activator, tissue type).

NR:

description
PREDICTED: tissue-type plasminogen activator isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01343 PLAT; tissue plasminogen activator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247053.1 False 2932 mRNA 0.50 16 1947141 1965053
XM_043247054.1 False 2797 mRNA 0.50 15 1947141 1965053
XM_043247056.1 True 3114 mRNA 0.49 15 1947141 1962204

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-117b11.1 LOC107670989,LOC107657213,LOC107754414,LOC107722857,LOC107560032,LOC107559594,LOC107559561 coding downstream 10269 1927729 ~ 1936872 (-)
cltcl1 LOC107559593,LOC107670971,LOC108412499 coding downstream 20419 1880738 ~ 1926722 (-)
si:dkey-178e17.1 slc25a1,LOC107754397,LOC107670994,LOC107657208,LOC107722854,LOC108412497 coding downstream 68242 1857920 ~ 1878899 (-)
si:dkey-178e17.3 LOC107754395,LOC107671045,LOC107657210,LOC107722861 coding downstream 94602 1837123 ~ 1852539 (-)
LOC122350661 NA coding downstream 169667 1771982 ~ 1777474 (-)
vdac3 vdac3,LOC107754399,LOC107671013,LOC107560056 coding upstream 31497 1996550 ~ 2008100 (-)
rpl6 LOC107699672,LOC107671003,LOC107559598 coding upstream 76501 2041554 ~ 2044605 (-)
acaa2 acaa2,LOC107671002 coding upstream 81063 2046116 ~ 2055183 (-)
seta seta,LOC107699670,LOC107752982,LOC107754404,LOC107560061,LOC107671021 coding upstream 106836 2071889 ~ 2075596 (-)
zdhhc12a LOC107699641,LOC107560045 coding upstream 111094 2076147 ~ 2081503 (-)
G60237 NA non-coding downstream 97208 1849488 ~ 1849933 (-)
G60204 NA non-coding downstream 166788 1726225 ~ 1780353 (-)
LOC122349999 NA non-coding downstream 181598 1717401 ~ 1765543 (-)
G60207 NA non-coding downstream 252321 1674474 ~ 1694820 (-)
G60214 NA non-coding downstream 263101 1673516 ~ 1684040 (-)
G60471 NA non-coding upstream 22720 1987773 ~ 1988553 (-)
G60473 NA non-coding upstream 26282 1991335 ~ 1994745 (-)
G60487 dynll1,dyl1,LOC107559583,LOC100698873 non-coding upstream 72647 2037700 ~ 2039825 (-)
G60510 NA non-coding upstream 159005 2124058 ~ 2124341 (-)
G60519 NA non-coding upstream 201879 2166932 ~ 2168247 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other downstream 125491 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other downstream 184592 1749062 ~ 1762549 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other downstream 340532 1561546 ~ 1606609 (-)
G60220 NA other downstream 366525 1576805 ~ 1580616 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other downstream 590188 1349171 ~ 1356953 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other upstream 94341 2059394 ~ 2061481 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other upstream 166316 2131369 ~ 2162003 (-)
G60564 pxnb other upstream 495878 2460931 ~ 2464371 (-)
bicdl1 bicdl1,LOC107553048 other upstream 556161 2521214 ~ 2552187 (-)
rad9b LOC105891618,LOC107713043,LOC107671006,LOC107552191,LOC107714555 other upstream 817567 2782620 ~ 2823826 (-)

Expression


Co-expression Network