tfe3a (tfe3a,LOC107584878,LOC107727418,LOC107743115,LOC107701807,LOC107674333)


Basic Information

Item Value
gene id tfe3a
gene name tfe3a,LOC107584878,LOC107727418,LOC107743115,LOC107701807,LOC107674333
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3979779 ~ 3994876 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247057.1
CAGATTTACTCCCCTCAGTGTGCTCAGAAGAGAGCGAGATAACTGTTTGCACAGCAGCCAGACTCTGATAGAGGAACTAAGGACTTTGGACTTCTAAGacgcatttatttttcatcaagCTGTAGCGCAGACTGATAAAGAAAGCCTCGACGCGGAAAACGCATAGACCAGTTGTGCAGTAAACATCTCGCTAGCGGTCGGGAAGTGCGGCGGTCCTCTATTTTAACCTTTTCCGAAAACAACTGGCTTCACAACTTTGTTCAGTTTGCGAACTTTAGATTAGATTATTGGCATTCTAGATCGCTCTACCTCGTTTATTTCGCTCGTCGTGAATACCATTTTACACCTGTAGAAATGTCCAGCCTGCCTTCCGTCAAACCTGAGAAGGGCAGACCGGAAGTGGCGTTACCTGGGCAACAGGCGCCGCTCGAGCGTCCTCAGACCGTCTACGTCATATTAGACTCAGCCGAATCTGTCAATCTCATCAGTGTCGAACCCCTTCTTCCTGAGTCTGGGATTGTGGCGGACATCGAAGTAGAAGGCGTCTTTTCCACGGATTCTGACACTTTCTACGAGCTGAAGAGTCAACCGATCACCTCAAGTGGCTCTGTGACCTCTGCTGACCCCGTGACCCCAGTCGGCTCCGCGATGACGTCACGCGTGTTGATGAGGCAGGAGCTGATGCGACAGCAGgctcaggaccaggagagacgGGAGGCCCAAAAACAGGCCTCCAGCGCTCAGCAGCGGCCCGCCGACGCGACCCCCGCCATCTCCGTCGCGTCCGCCCTGCCGTCCACCCCGACCCAGGTGCCCGTGGAAGTGCTGAAGGTTCAGACTCACTTGGAAAACCCGACAAAGTACCACATCCAGCAAGCCCAGAGGCAGCAAGTGAAGCAATACCTCTCTCACACCCTCGGCAGTAAAATAGCCAATCAGGCTCTGGCTACATCACCCTCGCCCCAGCCTGCCTCCGCCCCTGAGTTAACCCCAGCCGCCAGTAGCACTCCCAGCAGCCCGCTGGCTGTGCTCAGCCTGGGATCAAACAAAGAAGAGATCGAAGATGTCATCGATGACATCATCAGCCTGGAATCGAGTTTAAACGATGAATTTATGACGCTGATCGACTCGGGTTTACAGCTTCCCAACACGCTGCCAGTCTCAGGGAACCTCCTGGATGTGTACAGCGGTCAGGGCATGGCGGCGCCCAGCATTACCGTCAGCAGCTCCTGCCCTGCAGACCTGCAAAACGTCAAGAGAGAGCTGTCCGatgcaGAGGCGAAAGCTATTATGaaggagagacagaaaaaagacaaCCATAACTTGAtcGAGAGGAGAAGAAGGTTCAACATTAACGACCGCATTAAGGAACTTGGAGCTCTCATTCCAAAGTCCTCTGACCCCGAGATGCGCTGGAACAAGGGCACCATCCTAAAGGCGTCAGTCGACTACATCCGTAAGCTACAGAAGGAGCAGCAGAGGGCCAAAGAGATGGAGACGAGACAGAGGAAACTTGAACATGCTAACCGTAGCTTGCTGCTGCGCATTCAGGAGCTGGAAATGCAAGCTCGTCTCCACGGCATCTCAGCAGCTCAGATCTCTGACTCCACGCTGACCCAGACCCAGAATTTAACTCTGGATCACAACCCCAGCAACGACCTCTCCAAGACCCTTCTGTCCCTAAACCAGACCACGCCCTCTTCGTTCTTATCTCCGCCTTCTTCCACCTCGTCAGTGGGCGGGACCGTCACCAGCCCTCTGGACCTCGGGACGCTCAGCTTCGCCGAGCTGGACGACCCCACGGCCTCCGTCTTCAATCCAGCCCTGATGGCGGATATGGGGTTGGGGGATATTTTGATGGATGACAGCGGCGCTCTGTCGCCTGTAGGGGGCGCCGACCCCCTGCTTTCCTCGGTTTCCCCCGGAGCGTCCAAAACGAGCAGTCGTAGAAGTAGCTTCAGCATGGAAGAAGACTCGTGACGTCTTCAAATCGGACGATAGTTTTACGTTGCGTTGCGAATCCTGCTCGTGCGCTCCATTGCCGGCCAGTAGAGGGCAGCGTTATCCTAAAGTCTTTAGTAATCGCCGTGCTGTAGAAGCCTGAGATCCTCAAGACGTTTTTTTTCTAGAGGTGACACAAGTATAGAAAGACTTCGGGAGCAGACGCTGACATTTAGAGCCTCATTTATTATCTGGACCTCTGATAAATATATAGAAGAATATATGTACATAGAGTAGATTTAGTGCTAAACatctattttgtgtttttaatatgcagTTGTATGAAAAGTAGCACTATAATATTAACATGTTGGGGGAAAAAGAACATGCCTGAATGGTAAAACATATGATAACTTTTAGTTTCAGACCTCACTCGTATTGTGGGCTCCAAAAGTATGAGACTTTtgaactgtaaataaattaattaatcataaatatatatatatatatattagattctGCACTTAAAAAGAGTCAAACCAAATTACTAAGGacttttaaattatgcaaatcataTACAATATCGTTTAAAAGTTTGCAGTCAGTATGATGTtgtgaaaagaaattaatacttttattcagaaatgacgcattaaattgatcaaaattgacGGTGAAGAcgtttatatcaaataaaactaCTGTCATCAAAGAATAACGAAAGTAATCacggtttacacaaaaatattaacttcaATATAAAGGATTTTAATATGAAGCATATTAAGTGATTTCTgtagggtcatgtgacacttaagactggagtaatgttgAAATTTCAGCGTTGCatgacatgaataaattaccttttaaaatggattcaaatagaaaacacttatttcaaattgtaataatatttcacaatatttactgtactttgatcaaataaacgcaacAAATGGGTTATTTTGCAAACATGACAAAGAAATCCTTACCAAACCCAAACGTTTGAACAATAGTGTAATTtctaataaatgttacattacatGATAAATGTCTCAGACGTTCGGAGCTGACAGTATGTCAGTGTTTACAGTAGTTAGTAGCTCATCGAGTACAAAAGGGAcagttgtgttttgtttcccttttttttttaatgtgcgaGTGTGCATCTGCTCATTTGGTAAAAGGTGGCAGTGAACGCGTTCCTGAACCTGCTTTTAATGTCCTCAGGAAAGAGCAACAGACAGAAAAGAGAACATCCCGTTCAGCTCGGCTTTCATTTCCTGCTGAGATTTTTTTTGAGTCAAATTACACCCAGCTTCACGCCGAGGGTCTGAAAGATGCATGTTTGATTTAAAGGGAAGTcaagaaacacactcaaaaataGTGTAACGTAACTTTAACTAATAATTAACTTCGTTTAAGCTATTCACGATATTCAATTCAGTTTTAAACGACTTGCAGCCAATTTGatagatttagaaaaaaattgaaGACAGCAACTGACCTTAAGATTTAAAGTAGGtggacttttaaaaagtaagttTAATTGTGCCATTGACCTGCATTGCATCTCGGCCGCTCTAACTGATTTTTTTCCTCTGGTTAAGTCATGTGCTGATGTCAGATAGTCTATGCAAGTACTTTCATAGTGAAGTAGCAGAGGTTTACGTGAGCAGATGACAGTCATGTTTCCTTTGACATTCAAAGACCTTCCAGCTCCGGATTATTGTTCTTGTTCTCTGCCAGAGAGCAGCCAGTCGCATTAATGCATCGTCAAACTGAATTTCTTCCTGCGAACTTTTACGTCCCTTATCAGGATTAGTGTGACATTCAGAAGTTTCCACAGACTCATTCTGCTATTGATGGCTTTTATAAACGCTTCTAGTCAAATGGAATCAGAAGAAAAccgtttggttttgttttttaagaatcttttaaatatacttccggattataat
>XM_043247058.1
TTTCACCGGGGGATAGAGGAGCTTCGCGTGCGCGGAGTGGCACAAACATGGCCACCTTGTGAAACCAAAACACTAGTGAAACGGCGATGCTCTGCGCGTAAAATCTCGCCCTCACACCGTCCAAATCTACGTGACAGCGTCGTATAAGTCCCGGATTCAGATGCAGAACATGAGCTGATGGGGATTCCAGACCGGATTTACCGGAATACTTTCGTTTGATAACGTTTGATCTGATTGCATCACTTGGATTATTCCACTTATCCAGAAAAGGCTTTAGTGTCGAACCCCTTCTTCCTGAGTCTGGGATTGTGGCGGACATCGAAGTAGAAGGCGTCTTTTCCACGGATTCTGACACTTTCTACGAGCTGAAGAGTCAACCGATCACCTCAAGTGGCTCTGTGACCTCTGCTGACCCCGTGACCCCAGTCGGCTCCGCGATGACGTCACGCGTGTTGATGAGGCAGGAGCTGATGCGACAGCAGgctcaggaccaggagagacgGGAGGCCCAAAAACAGGCCTCCAGCGCTCAGCAGCGGCCCGCCGACGCGACCCCCGCCATCTCCGTCGCGTCCGCCCTGCCGTCCACCCCGACCCAGGTGCCCGTGGAAGTGCTGAAGGTTCAGACTCACTTGGAAAACCCGACAAAGTACCACATCCAGCAAGCCCAGAGGCAGCAAGTGAAGCAATACCTCTCTCACACCCTCGGCAGTAAAATAGCCAATCAGGCTCTGGCTACATCACCCTCGCCCCAGCCTGCCTCCGCCCCTGAGTTAACCCCAGCCGCCAGTAGCACTCCCAGCAGCCCGCTGGCTGTGCTCAGCCTGGGATCAAACAAAGAAGAGATCGAAGATGTCATCGATGACATCATCAGCCTGGAATCGAGTTTAAACGATGAATTTATGACGCTGATCGACTCGGGTTTACAGCTTCCCAACACGCTGCCAGTCTCAGGGAACCTCCTGGATGTGTACAGCGGTCAGGGCATGGCGGCGCCCAGCATTACCGTCAGCAGCTCCTGCCCTGCAGACCTGCAAAACGTCAAGAGAGAGCTGTCCGatgcaGAGGCGAAAGCTATTATGaaggagagacagaaaaaagacaaCCATAACTTGAtcGAGAGGAGAAGAAGGTTCAACATTAACGACCGCATTAAGGAACTTGGAGCTCTCATTCCAAAGTCCTCTGACCCCGAGATGCGCTGGAACAAGGGCACCATCCTAAAGGCGTCAGTCGACTACATCCGTAAGCTACAGAAGGAGCAGCAGAGGGCCAAAGAGATGGAGACGAGACAGAGGAAACTTGAACATGCTAACCGTAGCTTGCTGCTGCGCATTCAGGAGCTGGAAATGCAAGCTCGTCTCCACGGCATCTCAGCAGCTCAGATCTCTGACTCCACGCTGACCCAGACCCAGAATTTAACTCTGGATCACAACCCCAGCAACGACCTCTCCAAGACCCTTCTGTCCCTAAACCAGACCACGCCCTCTTCGTTCTTATCTCCGCCTTCTTCCACCTCGTCAGTGGGCGGGACCGTCACCAGCCCTCTGGACCTCGGGACGCTCAGCTTCGCCGAGCTGGACGACCCCACGGCCTCCGTCTTCAATCCAGCCCTGATGGCGGATATGGGGTTGGGGGATATTTTGATGGATGACAGCGGCGCTCTGTCGCCTGTAGGGGGCGCCGACCCCCTGCTTTCCTCGGTTTCCCCCGGAGCGTCCAAAACGAGCAGTCGTAGAAGTAGCTTCAGCATGGAAGAAGACTCGTGACGTCTTCAAATCGGACGATAGTTTTACGTTGCGTTGCGAATCCTGCTCGTGCGCTCCATTGCCGGCCAGTAGAGGGCAGCGTTATCCTAAAGTCTTTAGTAATCGCCGTGCTGTAGAAGCCTGAGATCCTCAAGACGTTTTTTTTCTAGAGGTGACACAAGTATAGAAAGACTTCGGGAGCAGACGCTGACATTTAGAGCCTCATTTATTATCTGGACCTCTGATAAATATATAGAAGAATATATGTACATAGAGTAGATTTAGTGCTAAACatctattttgtgtttttaatatgcagTTGTATGAAAAGTAGCACTATAATATTAACATGTTGGGGGAAAAAGAACATGCCTGAATGGTAAAACATATGATAACTTTTAGTTTCAGACCTCACTCGTATTGTGGGCTCCAAAAGTATGAGACTTTtgaactgtaaataaattaattaatcataaatatatatatatatatattagattctGCACTTAAAAAGAGTCAAACCAAATTACTAAGGacttttaaattatgcaaatcataTACAATATCGTTTAAAAGTTTGCAGTCAGTATGATGTtgtgaaaagaaattaatacttttattcagaaatgacgcattaaattgatcaaaattgacGGTGAAGAcgtttatatcaaataaaactaCTGTCATCAAAGAATAACGAAAGTAATCacggtttacacaaaaatattaacttcaATATAAAGGATTTTAATATGAAGCATATTAAGTGATTTCTgtagggtcatgtgacacttaagactggagtaatgttgAAATTTCAGCGTTGCatgacatgaataaattaccttttaaaatggattcaaatagaaaacacttatttcaaattgtaataatatttcacaatatttactgtactttgatcaaataaacgcaacAAATGGGTTATTTTGCAAACATGACAAAGAAATCCTTACCAAACCCAAACGTTTGAACAATAGTGTAATTtctaataaatgttacattacatGATAAATGTCTCAGACGTTCGGAGCTGACAGTATGTCAGTGTTTACAGTAGTTAGTAGCTCATCGAGTACAAAAGGGAcagttgtgttttgtttcccttttttttttaatgtgcgaGTGTGCATCTGCTCATTTGGTAAAAGGTGGCAGTGAACGCGTTCCTGAACCTGCTTTTAATGTCCTCAGGAAAGAGCAACAGACAGAAAAGAGAACATCCCGTTCAGCTCGGCTTTCATTTCCTGCTGAGATTTTTTTTGAGTCAAATTACACCCAGCTTCACGCCGAGGGTCTGAAAGATGCATGTTTGATTTAAAGGGAAGTcaagaaacacactcaaaaataGTGTAACGTAACTTTAACTAATAATTAACTTCGTTTAAGCTATTCACGATATTCAATTCAGTTTTAAACGACTTGCAGCCAATTTGatagatttagaaaaaaattgaaGACAGCAACTGACCTTAAGATTTAAAGTAGGtggacttttaaaaagtaagttTAATTGTGCCATTGACCTGCATTGCATCTCGGCCGCTCTAACTGATTTTTTTCCTCTGGTTAAGTCATGTGCTGATGTCAGATAGTCTATGCAAGTACTTTCATAGTGAAGTAGCAGAGGTTTACGTGAGCAGATGACAGTCATGTTTCCTTTGACATTCAAAGACCTTCCAGCTCCGGATTATTGTTCTTGTTCTCTGCCAGAGAGCAGCCAGTCGCATTAATGCATCGTCAAACTGAATTTCTTCCTGCGAACTTTTACGTCCCTTATCAGGATTAGTGTGACATTCAGAAGTTTCCACAGACTCATTCTGCTATTGATGGCTTTTATAAACGCTTCTAGTCAAATGGAATCAGAAGAAAAccgtttggttttgttttttaagaatcttttaaatatacttccggattataat

Function

symbol description
tfe3a Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within transcription, DNA-templated. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain neural plate; intermediate cell mass of mesoderm; solid lens vesicle; ventral mesoderm; and yolk syncytial layer. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human TFE3 (transcription factor binding to IGHM enhancer 3).

NR:

description
PREDICTED: microphthalmia-associated transcription factor-like isoform X2

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005654 nucleoplasm cellular_component
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09105 TFE3; transcription factor E3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247057.1 True 3905 mRNA 0.45 10 3979779 3994876
XM_043247058.1 False 3694 mRNA 0.45 10 3982097 3994876

Neighbor

gene id symbol gene type direction distance location
fgd1 fgd1,LOC107552218,LOC107727417 coding upstream 578 3932790 ~ 3979201 (+)
pcsk1nl pcsk1nl,LOC107743122,LOC107552210,LOC107701826,LOC107584871,LOC107674382 coding upstream 133834 3835796 ~ 3845945 (+)
LOC122350007 LOC107552172 coding upstream 145625 3828509 ~ 3834154 (+)
LOC122350989 LOC107751585,LOC107696922,LOC107552208,LOC107584868,LOC107674323,LOC107584869 coding upstream 171932 3800278 ~ 3807847 (+)
slc6a6a slc6a6a,LOC107696920,LOC107552205,LOC107714566,LOC108264963,LOC107674322 coding upstream 214691 3743485 ~ 3765088 (+)
cxxc1a cxxc1a,LOC107701818,LOC107743112,LOC107727409,LOC107674299,LOC107577056 coding downstream 12712 4007588 ~ 4012823 (+)
mbd1a LOC107743107,LOC107701816,LOC107552163,LOC107584915,LOC107727404 coding downstream 19038 4013914 ~ 4027702 (+)
abcd1 abcd1,LOC107701814,LOC107743108,LOC107552221,LOC107727428,LOC107674359,LOC108265308 coding downstream 80142 4075018 ~ 4091029 (+)
plxnb3 plxnb3,LOC107701812,LOC107743121,LOC107727420,LOC107674349,LOC107584917,LOC107601751 coding downstream 98376 4093252 ~ 4162563 (+)
srpk3 srpk3,LOC107743111,LOC107727421,LOC107601770,LOC107584918,LOC107674354 coding downstream 169663 4164539 ~ 4182039 (+)
G60870 NA non-coding upstream 70979 3907712 ~ 3908800 (+)
G60803 LOC107552212,LOC107701823,LOC107743103,LOC107674315,LOC107727414 non-coding upstream 93906 3884882 ~ 3885873 (+)
G60782 NA non-coding upstream 153363 3824902 ~ 3826416 (+)
G60743 NA non-coding upstream 323847 3654761 ~ 3655932 (+)
LOC122350949 NA non-coding upstream 371802 3607315 ~ 3607977 (+)
G60895 NA non-coding downstream 145733 4140609 ~ 4215206 (+)
G61007 NA non-coding downstream 306796 4301672 ~ 4342107 (+)
G61048 NA non-coding downstream 438122 4432998 ~ 4436499 (+)
G61056 NA non-coding downstream 444132 4439008 ~ 4444416 (+)
G61087 LOC107687770,LOC107743582,LOC107696015,LOC107572510,LOC107738665 non-coding downstream 504001 4498877 ~ 4499407 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other upstream 48291 3924861 ~ 3931488 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other upstream 129222 3848614 ~ 3850557 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 1939943 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 1943799 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 1959745 2014859 ~ 2020034 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 34427 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 1109694 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 1232076 5226952 ~ 5229608 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other downstream 2761229 6756105 ~ 6766543 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other downstream 2853605 6848481 ~ 6849711 (+)

Expression


Co-expression Network