arpc5la (arpc5la,LOC107571143,LOC107728439,LOC107550963,LOC107676626,LOC107753090,LOC108411248)


Basic Information

Item Value
gene id arpc5la
gene name arpc5la,LOC107571143,LOC107728439,LOC107550963,LOC107676626,LOC107753090,LOC108411248
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 18675319 ~ 18678826 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247072.1
GCTGCATCACAGGAAACGGAAACACCGTGTGACAGCCTGCCCGCGGTGTGTCATTCCGTTTCCGCTTCAGTCGGGATTTTCGTGCGCTCTGCAGGAACGCGCGGAGATGCTGCCGCTGGGGGAGAGGTAACAGCCGCACCTTCCCGCTGACAGATGAACGCAGGAGCGGCGCCCCGTGCCCTCGGCTCCCGGCTCTGACGCGCGCGCATCGGTCCCGTTACCGCACGCTCCCGGACTCGCGCGATCGACCGAAGCCGCTCCTCCTCATGGCGAAAAACACCCTGTCCTCGCGATTCCGGGGAGTCGACATCGACGAGTACGACGAGAATAAATTCGTGGACGAGCAGGACGAGGCGGCCGAGCAGCAGGGACCGGACGCGTGCGAGGTGGACGAGCTCCTCAGGCGAGGGGACACGATGACGGCGTTTCACATCGCCCTGAGGAATCCACCAATCAACTCCAAGAATCCAGCGGTGAAAGAGCGGGCGCAGGCGGCGGTGCTACGAGTGCTGACCTCGTTCAAGAGCAGCGACATCGAGGCGGCCGTCAAGTCTCTGGACAGGAACGGAGTGGACCTGCTGATGAAGTACATCTACAGAGGCTTCGAGAAGCCCTCGGACAACAGCAGCGCCGTCCTGCTCCAGTGGCACGAAAAGGCTTTCGCCGCGGGGGGCCTGGGGTCCATCGTGCGGGTCCTGACCGCGAGAAAATCCGTCTGAGGAGCCGAGAAAGAACGCCGGAGGTAACGGCCACGGGATTCGTTTCTCTTTCTTTAGACAAGGACAGCTTCCTCTTCTCTCGCAGCTCAACCTCACCCGAGGGGAAACCACTCGCGCTCAACCGATTATTTCACTCAGACACGGAGATGTTGTatgatatttaatgtaaattattgaTTCGTCGGTGTGTTACGGAAGACGTGGTTGTCGACCGGCGGAAGGCGGACGGTCCTGGACGGAAGGACGAGCCCTGAGCTGCAGCTTCAGGGAAAAACAAATACTGTGAGCGATTATGAAAGTCGTGTTTTACTTAGTTGGCACTCTCGGACGTGAAGTTCTCATTTCTTTAGCTCCGGTTCTCATTTTTCTTATTGTACAGAAAGAGGatgatgtttaatatatatatatatagtatttaggTGATGGTTGAAATCGTAGTGTGGGGTCGGGAGGGTTATTGTGAAGTGCCTGGTGCAATAAACAACATCAAGAGTGGA

Function

symbol description
arpc5la Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton. Predicted to be part of Arp2/3 protein complex. Predicted to be active in cytoplasm. Is expressed in notochord. Orthologous to human ARPC5L (actin related protein 2/3 complex subunit 5 like).

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 5-like protein

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05754 ARPC5; actin related protein 2/3 complex, subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247072.1 True 1216 mRNA 0.56 4 18675319 18678826

Neighbor

gene id symbol gene type direction distance location
LOC122350979 LOC107728433,LOC107676613 coding upstream 3090 18663946 ~ 18672229 (+)
olfml2a olfml2a,LOC107657324,LOC107550966,LOC107554414,LOC107703179 coding upstream 23765 18634296 ~ 18651554 (+)
zgc:152830 zgc:152830,LOC107550967,LOC107657328,LOC107703177,LOC107554415,LOC107712486 coding upstream 60427 18608715 ~ 18614892 (+)
dusp2 dusp2,LOC107657330,LOC107712482,LOC107550972,LOC107554416,LOC107703175 coding upstream 218780 18453576 ~ 18456539 (+)
LOC122350731 LOC107703135,LOC107753145,LOC107550932,LOC107712468,LOC107657321 coding upstream 228258 18443075 ~ 18447061 (+)
si:ch211-158d24.4 NA coding downstream 46957 18725783 ~ 18729136 (+)
si:dkeyp-14d3.1 si:dkeyp-14d3.1,LOC107676622,LOC107728438,LOC107659267,LOC107550917,LOC107753136 coding downstream 82821 18761647 ~ 18941677 (+)
glt1d1 glt1d1,LOC107676618,LOC107659266 coding downstream 317643 18996469 ~ 19023292 (+)
LOC122351071 slc7a4 coding downstream 402771 19081597 ~ 19090260 (+)
LOC122350065 pold2,LOC107747204 coding downstream 421480 19100306 ~ 19103847 (+)
G64910 NA non-coding upstream 975 18673967 ~ 18674344 (+)
G64889 NA non-coding upstream 57135 18616978 ~ 18618184 (+)
G64878 NA non-coding upstream 223955 18451042 ~ 18451364 (+)
G64862 NA non-coding upstream 284108 18390674 ~ 18391211 (+)
G64858 NA non-coding upstream 308209 18366570 ~ 18367110 (+)
G65073 LOC107564452,LOC107733255,LOC107755688,LOC107702821,LOC107733264,LOC107668424,LOC553487,LOC107564453 non-coding downstream 333107 19011933 ~ 19234600 (+)
G65094 NA non-coding downstream 370456 19049282 ~ 19212125 (+)
G65108 NA non-coding downstream 504864 19183690 ~ 19347044 (+)
G65074 NA non-coding downstream 545743 19224569 ~ 19233384 (+)
G65119 NA non-coding downstream 726830 19405656 ~ 19482043 (+)
gpat2 gpat2,LOC107712449,LOC107550920,LOC107657318 other upstream 74835 18565699 ~ 18600484 (+)
adra2b adra2b,LOC107712484,LOC107657329,LOC107554404,LOC107753091,LOC107550971,LOC107703147 other upstream 210772 18460051 ~ 18464547 (+)
sb:cb288 NA other upstream 251514 18418948 ~ 18423805 (+)
lrrc75ba lrrc75ba,LOC107712478,LOC107753104,LOC107703167,LOC107554425,LOC107687975,LOC105891565,LOC108414797 other upstream 390358 18258220 ~ 18284961 (+)
LOC122350298 pla2g1b,LOC107703141,LOC107753147,LOC107554411,LOC107554412,LOC107550943 other upstream 594750 18071485 ~ 18080569 (+)
si:ch211-158d24.2 si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137 other downstream 16628 18695454 ~ 18722246 (+)
G65100 sf3a1,LOC107564451,LOC107550953 other downstream 416121 19094947 ~ 19096071 (+)
G65105 LOC107747205,LOC107550912,LOC107683889,LOC108412149 other downstream 441118 19119944 ~ 19152305 (+)
LOC122350733 LOC107702875,LOC107722994,LOC107591954,LOC107573969,LOC107722996,LOC107691581 other downstream 521162 19199988 ~ 19201687 (+)
pqbp1 pqbp1,LOC107702814,LOC107683912,LOC107747222 other downstream 593266 19272092 ~ 19273770 (+)

Expression


Co-expression Network