si:ch73-233m11.2 (LOC107674326,LOC107714544,LOC107580288)


Basic Information

Item Value
gene id si:ch73-233m11.2
gene name LOC107674326,LOC107714544,LOC107580288
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3711617 ~ 3719423 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247087.1
CTTCTCTTCTCTTTGCTTCCGCGTTGGGATCAACCGTCTGTTTTGTCACGAAACTGTGTCGTTCCCCCGATAAACGGCACTATCGACCCGCTTGTCAGAAACGGACGGTTAACTGCGGCCATGTACAGCGAGATTTCATACGATGTGCAGCAAGTGCATAAGGAGGCTTTGAGAAACACTGTCCTGAGCTCAACTCTGCCCAGTTCTCTGTTGGGAGGTCAGCCCGTGTCAGAGGTGATCCAGAGAGGCCACTACACGCCGCTGTCAGCGAGTGCGTACAAGGTCATCAGTGGATTTGTTAAGAGAGGAGACCGGGAAGCTTTAGAGGATGTCATATCTCAGGAGTTTTCCCCAGGATCTGAAGGCCGTAGACTGGTTCTTTATGGTGATGCCGGAATGGGCAAGACTACAGCTGTGGAGAAGATCATGTGGGATTGGACGTCAGGCACGCGTCTGCAACATTACACGCTCCTCATGCGAATTCCTGTTCGGGAGCTGGCGGCTCTTGGAGGGAAAGCAGAGAGTTTGCGAAGCATGCTGGGCCGCATGCACACTCACATCTCCACAGAGACTCTCGCTGGAGCTCTGCAGAGGCCTCAGTCTCTTCTTCTTGCGCTTGACGGACTGGAGCAACTGCAGCACCTTCCGTGCACTCCATCGTCCTCACCCAGCCTCGTATGCGACGTACAACAAGAAGCCACCGGCTCCGTCTTGCTGTACAGTCTGCTTCACGGATCTCTCCTCGCTGAAGCTTCAATGCTGATCACGTCGCGAAAGCCGTTCGAGCCCTTGAGTTGTTTTGAGGTGGTCGGGTTCTCCCAGACCCAAAGGAGAACGTTCTTTCGGTGCTTCTTCGGCGACGAAGGCCAAGCAGAGAGACTTTATCGCCAGTGTGAGCAGTCGTTGGGAGTATACGAGCAGTGTTTTCATCCGGCCTTCTGCTGGACGCTTTGCAACGTGTTACAAACTCAGTCAGAGAGTAAAAACGCCCCTCCTGAGACTCTTACTCACCTGCTCGGCGTTATCACGCACATGCTCCTGCAGAAACAGAAGATGCATGCAGAGCAAAGCAGAGTACTTGTGTCCTGTTTGGGACAACTAACCAGTCTGGTTTGCTCCAACAGCGACGTCACATCCTGCGGCCTGCGTTCTTTTCTGCACCACCCCGTGCTTTCTGCTTTCTTGCGCATCAACGGTGATGCCACTTCCCCTGATTCCACATTCTCCTTCCTGTCTCCAGTGATGCACGAGTTCCTATCAGCCGCCTCCTTTTATCTCGACCAATCCGTGCAGGAGATCTCGGACAAGCGCTCGGGTCTGTACCACACATTTCTAGCAGGACTGTCGGACTCCGTCCAGCGTAAACCGATAGAAGACTCCGTGGGAAAGTTCAATGAAAGCCGAATATCTGCGTTCTCTCAGTGGATGGTGGGAAatgtttctagggtgttgccaGGTATTGATGCAACAACGCACTTTGGTGTTTTTCGGCTTCTGCATCATGCGCGTAACTCATCTCTGGTCAAAGAAAGCATTCTTAAGGCCCAGTGGAGGCTTGTGTCGTACAGCTCCATGCAGGAGGCCGACTGCGCTGCGCTGTCTTATGTAGTGAGTTGCGTCGGAGAGATGGAGCACATGAACCTGTACGGAGCAGAACTAACAGACGAACAGGTCAGGAGACTAATACCAGCGTTACGGCTGTCGAAAAGCATTGGTCTGTCACAGAGTCGTCTCGGTTTGCCTGCCATCACCCACCTGTTCACAGCACTGGCTGAGGGACGGACTGTAACGCTGGATCTTTCACACGCCAAGTTGGAAAAAGACTGGGTCAAAACCGTCTGCCACGGACTCACACTCTCCACTCTGGAGTCTCTCAATTTGTGTGGATGCTCATTGGCTGCAGCTGACTGCGAGGCCCTGGCTCAGATGCTCTCCGGAGGCTCACGACTGCATGTGCTCAATCTGCGTGGGACTTATATAGAGGATCAAGGCCTTATTCTTTTCATCAGTGCACTGGAGAACTGCAGACTACTGGAAATCGATCTGTCCTTGTGTTCACTGACGACAGCATCCATCCCTGCGCTGTCTTCGGCTCTGAACAGCGGTTTTTCAGAGCTGAGGAAGCTAAATCTGAGACAGAACAAAGTGACGGACGATTGGATGGAGCTGATGTCGAAATTTATAAAGAAAGGCCGTCTCAACACATTGAATATGTCTAGCTGTGAGTTGACCGGGTCCTGCTGCTCTTCTCTGGCAGCTGCCCTCCAATCAGAAACCTGCCGTCTGACTGAGCTGGATCTGTCCGTAAATGACCTCGGCCAATCAGGAGCGATGCAGATATGCGATGCACTCATGGCTCCTACGTGCACACTGGAAATACTGAAAATGAGCAGATGCGAGCTGACCGAGGAGGTGTTTCGAGCGCTGGGGAGTGTTTTGACGTCTGGCGTGTCAAAGCTCGTCAGTCTCTCGGTAGCAGTGAACGATGTGGGCGACGCCGGAGCCAAACACATTTTGGAGGCGCTGAGGCACAAACACTGCAAACTGCAGCACCTGAATTTGGAGATGGTGTCGCTCACAGACGCTTGCGTTGAGGTGTTATGTCAGTCCGTTGCTGCTTGTAACACTTTATCGACTCTGATCCTAAAGAACAACGTAATGACGGACTCCTCCGTACCAAGATTGGTTAAATTAATGCAGGGACGCCCGCTAATGACCGAGCTGAAtctgAAGTATAATGACTTCAGTGAAGATGTTATTGAGTTGATGGACACGTGCccaaatatcatttattaaagaaatgcatCTCA
>XM_043247088.1
CTTCTCTTCTCTTTGCTTCCGCGTTGGGATCAACCGTCTGTTTTGTCACGAAACTGTGTCGTTCCCCCGATAAACGGCACTATCGACCCGCTTGTCAGAAACGGACGGTTAACTGCGGCCATGTACAGCGAGATTTCATACGATGTGCAGCAAGTGCATAAGGAGGCTTTGAGAAACACTGTCCTGAGCTCAACTCTGCCCAGTTCTCTGTTGGGAGGTCAGCCCGTGTCAGAGGTGATCCAGAGAGGCCACTACACGCCGCTGTCAGCGAGTGCGTACAAGGTCATCAGTGGATTTGTTAAGAGAGGAGACCGGGAAGCTTTAGAGGATGTCATATCTCAGGAGTTTTCCCCAGGATCTGAAGGCCGTAGACTGGTTCTTTATGGTGATGCCGGAATGGGCAAGACTACAGCTGTGGAGAAGATCATGTGGGATTGGACGTCAGGCACGCGTCTGCAACATTACACGCTCCTCATGCGAATTCCTGTTCGGGAGCTGGCGGCTCTTGGAGGGAAAGCAGAGAGTTTGCGAAGCATGCTGGGCCGCATGCACACTCACATCTCCACAGAGACTCTCGCTGGAGCTCTGCAGAGGCCTCAGTCTCTTCTTCTTGCGCTTGACGGACTGGAGCAACTGCAGCACCTTCCGTGCACTCCATCGTCCTCACCCAGCCTCGTATGCGACGTACAACAAGAAGCCACCGGCTCCGTCTTGCTGTACAGTCTGCTTCACGGATCTCTCCTCGCTGAAGCTTCAATGCTGATCACGTCGCGAAAGCCGTTCGAGCCCTTGAGTTGTTTTGAGGTGGTCGGGTTCTCCCAGACCCAAAGGAGAACGTTCTTTCGGTGCTTCTTCGGCGACGAAGGCCAAGCAGAGAGACTTTATCGCCAGTGTGAGCAGTCGTTGGGAGTATACGAGCAGTGTTTTCATCCGGCCTTCTGCTGGACGCTTTGCAACGTGTTACAAACTCAGTCAGAGAGTAAAAACGCCCCTCCTGAGACTCTTACTCACCTGCTCGGCGTTATCACGCACATGCTCCTGCAGAAACAGAAGATGCATGCAGAGCAAAGCAGAGTACTTGTGTCCTGTTTGGGACAACTAACCAGTCTGGTTTGCTCCAACAGCGACGTCACATCCTGCGGCCTGCGTTCTTTTCTGCACCACCCCGTGCTTTCTGCTTTCTTGCGCATCAACGGTGATGCCACTTCCCCTGATTCCACATTCTCCTTCCTGTCTCCAGTGATGCACGAGTTCCTATCAGCCGCCTCCTTTTATCTCGACCAATCCGTGCAGGAGATCTCGGACAAGCGCTCGGGTCTGTACCACACATTTCTAGCAGGACTGTCGGACTCCGTCCAGCGTAAACCGATAGAAGACTCCGTGGGAAAGTTCAATGAAAGCCGAATATCTGCGTTCTCTCAGTGGATGGTGGGAAatgtttctagggtgttgccaGGTATTGATGCAACAACGCACTTTGGTGTTTTTCGGCTTCTGCATCATGCGCGTAACTCATCTCTGGTCAAAGAAAGCATTCTTAAGGCCCAGTGGAGGCTTGTGTCGTACAGCTCCATGCAGGAGGCCGACTGCGCTGCGCTGTCTTATGTAGTGAGTTGCGTCGGAGAGATGGAGCACATGAACCTGTACGGAGCAGAACTAACAGACGAACAGGTCAGGAGACTAATACCAGCGTTACGGCTGTCGAAAAGCATTGGTCTGTCACAGAGTCGTCTCGGTTTGCCTGCCATCACCCACCTGTTCACAGCACTGGCTGAGGGACGGACTGTAACGCTGGATCTTTCACACGCCAAGTTGGAAAAAGACTGGGTCAAAACCGTCTGCCACGGACTCACACTCTCCACTCTGGAGTCTCTCAATATGTCTAGCTGTGAGTTGACCGGGTCCTGCTGCTCTTCTCTGGCAGCTGCCCTCCAATCAGAAACCTGCCGTCTGACTGAGCTGGATCTGTCCGTAAATGACCTCGGCCAATCAGGAGCGATGCAGATATGCGATGCACTCATGGCTCCTACGTGCACACTGGAAATACTGAAAATGAGCAGATGCGAGCTGACCGAGGAGGTGTTTCGAGCGCTGGGGAGTGTTTTGACGTCTGGCGTGTCAAAGCTCGTCAGTCTCTCGGTAGCAGTGAACGATGTGGGCGACGCCGGAGCCAAACACATTTTGGAGGCGCTGAGGCACAAACACTGCAAACTGCAGCACCTGAATTTGGAGATGGTGTCGCTCACAGACGCTTGCGTTGAGGTGTTATGTCAGTCCGTTGCTGCTTGTAACACTTTATCGACTCTGATCCTAAAGAACAACGTAATGACGGACTCCTCCGTACCAAGATTGGTTAAATTAATGCAGGGACGCCCGCTAATGACCGAGCTGAAtctgAAGTATAATGACTTCAGTGAAGATGTTATTGAGTTGATGGACACGTGCccaaatatcatttattaaagaaatgcatCTCA

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247087.1 True 2810 mRNA 0.52 9 3711617 3719423
XM_043247088.1 False 2477 mRNA 0.52 7 3711617 3719423

Neighbor

gene id symbol gene type direction distance location
wdr13 wdr13,LOC107584863,LOC107552201 coding downstream 34989 3669693 ~ 3676628 (-)
asb6 asb6,LOC107696906,LOC107674328,LOC107584902 coding downstream 42279 3665914 ~ 3669338 (-)
si:ch211-255g12.8 NA coding downstream 46428 3658184 ~ 3665189 (-)
neflb neflb,LOC107696905,LOC107552169,LOC107751592,LOC107674275,LOC107714547,LOC107576924 coding downstream 53573 3654752 ~ 3658044 (-)
dock5 dock5,LOC107674342,LOC107714571,LOC107696915,LOC107713013 coding downstream 75423 3583344 ~ 3636194 (-)
si:dkey-222n6.2 LOC107751587,LOC107696908,LOC107552203 coding upstream 1211 3720634 ~ 3725257 (-)
grip2a grip2a,LOC107751584,LOC107696921,LOC107714565,LOC107584908,LOC107552207 coding upstream 47131 3766554 ~ 3800174 (-)
hdac6 hdac6,LOC107743106,LOC107701824,LOC107584872,LOC107552211,LOC107727426,LOC107674364 coding upstream 132071 3851494 ~ 3864352 (-)
gata1b LOC107552162,LOC107743132,LOC107701810 coding upstream 148057 3867480 ~ 3873578 (-)
cdk20 cdk20,LOC107727427 coding upstream 156298 3875721 ~ 3879595 (-)
G60830 NA non-coding downstream 5311 3704732 ~ 3706306 (-)
G60819 NA non-coding downstream 7163 3645219 ~ 3704454 (-)
G60822 NA non-coding downstream 29851 3677250 ~ 3681766 (-)
G60729 NA non-coding downstream 131656 3579561 ~ 3579961 (-)
G60722 LOC107696914,LOC107713026,LOC107552198,LOC107584864,LOC107674302,LOC107714559 non-coding downstream 141807 3567816 ~ 3569810 (-)
G60839 NA non-coding upstream 13912 3733335 ~ 3734195 (-)
G60850 NA non-coding upstream 43030 3762453 ~ 3765083 (-)
G60858 NA non-coding upstream 112063 3831486 ~ 3852802 (-)
G60932 NA non-coding upstream 251021 3970444 ~ 3996691 (-)
LOC122351087 NA non-coding upstream 279414 3998837 ~ 3999610 (-)
G60679 adra1aa,LOC107553034,LOC107699645,LOC107713032,LOC107671010,LOC107552152 other downstream 676525 3032467 ~ 3035092 (-)
rad9b LOC105891618,LOC107713043,LOC107671006,LOC107552191,LOC107714555 other downstream 887791 2782620 ~ 2823826 (-)
bicdl1 bicdl1,LOC107553048 other downstream 1159430 2521214 ~ 2552187 (-)
G60564 pxnb other downstream 1247246 2460931 ~ 2464371 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other downstream 1549614 2131369 ~ 2162003 (-)
lhfpl4b lhfpl4b,LOC107584928,LOC107674308,LOC107727430,LOC107743140,LOC107701811,LOC107552174,LOC103032126,LOC108440531 other upstream 126030 3845453 ~ 3850590 (-)
zgc:113363 LOC107743117,LOC107701819,LOC107727412,LOC107584929 other upstream 280908 4000331 ~ 4006806 (-)
G60967 LOC107674359,LOC107701814,LOC107727428,LOC107743108,LOC107552221 other upstream 369301 4088724 ~ 4092157 (-)
G61023 NA other upstream 581569 4300992 ~ 4307499 (-)
G61071 LOC107601747,LOC107653424,LOC107734537,LOC107674377,LOC107578221 other upstream 673790 4393213 ~ 4397074 (-)

Expression


Co-expression Network