G30678



Basic Information


Item Value
gene id G30678
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 10732387 ~ 10736123 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU34684
CTTTAAAGTTAAAACATCGGTAGACCTTCAGCCTCATCTTTAAGTGGTTTAATAGTGAGAAGCTTCATTAGATGTGATGAAAGGACACGGCTGTAGCATCTTTCTGATGCATTCGAGAACTCAGAGATACATGCTTTTACAGTATATCATGAGCAGGCTAAAGTGTCACAATAAAGGGATGCCAAGAAATATATCTCCAAACCAGTGTTTGTGTAAATGATTTTATTTATTTTCACACAGACCAACAGCAGAAATGTTCCAAAAAAACCTAATGTTCTTAGTTCATTCTCCTGATGAGTCTGTTGATCTGGTCCTCCCTATTTCCTGCATCACCTCCCTCGACAAAGTGGGTGGTCTTCTTGTTCATGCCACCACGAGGAGAGGACAGTTTGAATGGCCAGAGGAAGTTGTTTGCAGCCTTGAAGTTCTTTCCAACCGTGTAGATCTCATGAATGAGATCCTCAACGCAGATGATTCCACACTGACCTGGATATATGCAAATCATGTGACTGGATCCTAATAAACGCTACTACTGTAATACCTAGCGTTCAATCAGGGTGTGCACTGCCTGGTCTTACCAAGGGTCTTCTCGATAAGGGAGTTGTCTGTGAGTGCAATGCGCTGCTTCTTGATCTTGCCGAATCCACGCTTGTAGATGAGCTCACGCACAGATTTAAGGTTGGGGTACCCCAGGCAATGTAGGGCTCTGCAATTCGGAGCATGTTGATGGTAGCCTTGTTCAGTTTGACAAAGACACCATTGAAGATCTGGCGGAGACGGAGCAGCTGAAGCACCTTGCGGACTTTGGGGCTGACACCATTGATACCTGATCCTGATGACAAATGCCAGTTTGGGCTCAGCTGGGACATAGTAGTTGCCTGCCTTGCGAGCCATCCTGTTCATGCGGATTTCACGCCTGTACATCTCCCTGTATTCCTTGTGGTAAGCTTCAGCCCTCTTGAAGATGAGTTTCCTGGTGACTTTGCGGGCCTATAGGTGAGAGAAGACATGCATTCTCAATTTGGGCTCTATGC
>TU34686
CTTTAAAGTTAAAACATCGGTAGACCTTCAGCCTCATCTTTAAGTGGTTTAATAGTGAGAAGCTTCATTAGATGTGATGAAAGGACACGGCTGTAGCATCTTTCTGATGCATTCGAGAACTCAGAGATACATGCTTTTACAGTATATCATGAGCAGGCTAAAGTGTCACAATAAAGGGATGCCAAGAAATATATCTCCAAACCAGTGTTTGTGTAAATGATTTTATTTATTTTCACACAGACCAACAGCAGAAATGTTCCAAAAAACTAATGTTCTTAGTTCATTCTCCTGATGAGTCTGTTGATCTGGTCCTCCCTATTTCCTGCATCACCTCCCTCGACAAAGTGGGTGGTCTTCTTGTTCATGCCACCACGAGGAGAGGACAGTTTGAATGGCCAGAGGAAGTTGTTTGCAGCCTTGAAGTTCTTTCCAACCGTGTAGATCTCATGAATGAGATCCTCAACGCAGATGATTCCACACTGACCTGGATATATGCAAATCATGTGACTGGATCCTAATAAACGCTACTACTGTAATACCTAGCGTTCAATCAGGGTGTGCACTGCCTGGTCTTACCAAGGGTCTTCTCGATAAGGGAGTTGTCTGTGAGTGCAATGCGCTGCTTCTTGATCTTGCCGAATCCACGCTTGTAGATGAGCTCACGCACAGATTTAAGGTTGGGGTACCCCAGGCAATGTAGGGCTCTGCAATTCGGAGCATGTTGATGGTAGCCTTGTTCAGTTTGACAAAGACACCATTGAAGATCTGGCGGAGACGGAGCAGCTGAAGCACCTTGCGGACTTTGGGGCTGACACCATTGATACCTCTGATCCTGATGACAAATGCCAGTTTGGGCTCAGCTGGGACATAGTAGTTGCCTGCCTTGCGAGCCATCCTGTTCATGCGGATTTCACGCCTGTACATCTCCCTGTATTCCTTGTGGTAAGCTTCAGCCCTCTTGAAGATGAGTTTCCTGGTGACTTTGCGGGCCTTCTTGTCAGCCATCGCCTTCTTTAGACGCACGGCCTTGATGGCAGCAAACCGCTGTCGCCTCTTCAAGAGGCTTTCGGGGACTGAGGGAACCTTCTTCTTTCTAATAAAAAAAAAGGTAGCACATTTGTCATTTCCCTGGTAACAGCATTAGGCCTGCAGAGCGGACTATCATAATGACAACTATGTCACGTTAAAAAAAAAAAAAG
>TU34687
CTTTAAAGTTAAAACATCGGTAGACCTTCAGCCTCATCTTTAAGTGGTTTAATAGTGAGAAGCTTCATTAGATGTGATGAAAGGACACGGCTGTAGCATCTTTCTGATGCATTCGAGAACTCAGAGATACATGCTTTTACAGTATATCATGAGCAGGCTAAAGTGTCACAATAAAGGGATGCCAAGAAATATATCTCCAAACCAGTGTTTGTGTAAATGATTTTATTTATTTTCACACAGACCAACAGCAGAAATGTTCCAAAAAACCTAATGTTCTTAGTTCATTCTCCTGATGAGTCTGTTGATCTGGTCCTCCCTATTTCCTGCATCACCTCCCTCGACAAAGTGGGTGGTCTTCTTGTTCATGCCACCACGAGGAGAGGACAGTTTGAATGGCCAGAGGAAGTTGTTTGCAGCCTTGAAGTTCTTTCCAACCGTGTAGATCTCATGAATGAGATCCTCAACGCAGATGATTCCACACTGACCTGGATATATGCAAATCATGTGACTGGATCCTAATAAACGCTACTACTGTAATACCTAGCGTTCAATCAGGGTGTGCACTGCCTGGTCTTACCAAGGGTCTTCTCGATAAGGGAGTTGTCTGTGAGTGCAATGCGCTGCTTCTTGATCTTGCCGAATCCACGCTTGTAGATGAGCTCACGCACAGATTTAAGGTTGGGGTACCCCAGGCAATGTAGGGCTCTGCAATTCGGAGCATGTTGATGGTAGCCTTGTTCAGTTTGACAAAGACACCATTGAAGATCTGGCGGAGACGGAGCAGCTGAAGCACCTTGCGGACTTTGGGGCTGACACCATTGACCTCTGATCCTGATGACAAATGCCAGTTTGGGCTCAGCTGGGACATAGTAGTTGCCTGCCTTGCGAGCCATCCTGTTCATGCGGATTTCACGCCTGTACATCTCCCTGTATTCCTTGTGGTAAGCTTCAGCCCTCTTGAAGATGAGTTTCCTGGTGACTTTGCGGGCCTTTGTCAGCCATCGCCTTCTTTAGACGCACGGCCTTGATGGCAGCAAACCGCTGTCGCCTCTTCAAGAGGCTTTCGGGGACTGAGGGAACCTTCTTCTTTGTTTCACCCGCCATTATCCC
>TU34682
GGTTTAACCAGTACAATTATGAACATCAGTATCAAGGAAGTAATACCTAAAGGCCATGCTTCTGAGATGAATAAATACAATAAACAGCACACAGTATAAAAATTAACTATGAACAAAGTACTACAACACTACTGTAATTGTTGATTGACGTATTATAGCAAATGTAATAGTTATTCCATAACACAAATACTCATGTAACACTTTTCGATCTACAAATAACCTGAATCACACAAATTGCCAGTATGCAAAGTTGAATGCAAATGCATAATTGTCACACTTATAAAGAACTAGCCATCTGTTGCAGTCAGGTGCTCACCTAATGTTCTTAGTTCATTCTCCTGATGAGTCTGTTGATCTGGTCCTCCCTATTTCCTGCATCACCTCCCTCGACAAAGTGGGTGGTCTTCTTGTTCATGCCACCACGAGGAGAGGACAGTTTGAATGGCCAGAGGAAGTTGTTTGCAGCCTTGAAGTTCTTTCCAACCGTGTAGATCTCATGAATGAGATCCTCAACGCAGATGATTCCACACTGACCTGGATATATGCAAATCATGTGACTGGATCCTAATAAACGCTACTACTGTAATACCTAGCGTTCAATCAGGGTGTGCACTGCCTGGTCTTACCAAGGGTCTTCTCGATAAGGGAGTTGTCTGTGAGTGCAATGCGCTGCTTCTTGATCTTGCCGAATCCACGCTTGTAGATGAGCTCACGCACAGATTTAAGGTTGGGGTACCCCAGGCAATGTAGGGCTCTGCAATTCGGAGCATGTTGATGGTAGCCTTGTTCAGTTTGACAAAGACACCATTGAAGATCTGGCGGAGACGGAGCAGCTGAAGCACCTTGCGGACTTTGGGGCTGACACCATTGATACCTGATCCTGATGACAAATGCCAGTTTGGGCTCAGCTGGGACATAGTAGTTGCCTGCCTTGCGAGCCATCCTGTTCATGCGGATTTCACGCCTGTACATCTCCCTGTATTCCTTGTGGTAAGCTTCAGCCCTCTTGAAGATGAGTTTCCTGGTGACTTTGCGGGCCTCTTGTCAGCCATCGCCTTCTTTAGACGCACGGCCTTGATGGCAGCAAACCGCTGTCGCCTCTTCAAGAGGCTTTCGGGGACTGAGGGAACCTTCTTCTTTGTTTCACCCGCCATTATCCC
>TU34689
GGTTTAACCAGTACAATTATGAACATCAGTATCAAGGAAGTAATACCTAAAGGCCATGCTTCTGAGATGAATAAATACAATAAACAGCACACAGTATAAAAATTAACTATGAACAAAGTACTACAACACTACTGTAATTGTTGATTGACGTATTATAGCAAATGTAATAGTTATTCCATAACACAAATACTCATGTAACACTTTTCGATCTACAAATAACCTGAATCACACAAATTGCCAGTATGCAAAGTTGAATGCAAATGCATAATTGTCACACTTATAAAGAACTAGCCATCTGTTGCAGTCAGGTGCTCACCTAATGTTCTTAGTTCATTCTCCTGATGAGTCTGTTGATCTGGTCCTCCCTATTTCCTGCATCACCTCCCTCGACAAAGTGGGTGGTCTTCTTGTTCATGCCACCACGAGGAGAGGACAGTTTGAATGGCCAGAGGAAGTTGTTTGCAGCCTTGAAGTTCTTTCCAACCGTGTAGATCTCATGAATGAGATCCTCAACGCAGATGATTCCACACTGACCTGGATATATGCAAATCATGTGACTGGATCCTAATAAACGCTACTACTGTAATACCTAGCGTTCAATCAGGGTGTGCACTGCCTGGTCTTACCAAGGGTCTTCTCGATAAGGGAGTTGTCTGTGAGTGCAATGCGCTGCTTCTTGATCTTGCCGAATCCACGCTTGTAGATGAGCTCACGCACAGATTTAAGGTTGGGGTACCCCAGGCAATGTAGGGCTCTGCAATTCGGAGCATGTTGATGGTAGCCTTGTTCAGTTTGACAAAGACACCATTGAAGATCTGGCGGAGACGGAGCAGCTGAAGCACCTTGCGGACTTTGGGGCTGACACCATTGACCTCTGATCCTGATGACAAATGCCAGTTTGGGCTCAGCTGGGACATAGTAGTTGCCTGCCTTGCGAGCCATCCTGTTCATGCGGATTTCACGCCTGTACATCTCCCTGTATTCCTTGTGGTAAGCTTCAGCCCTCTTGAAGATGAGTTTCCTGGTGACTTTGCGGGCCTTCTTGTCAGCCATCGCCTTCTTTAGACGCACGGCCTTGATGGCAGCAAACCGCTGTCGCCTCTTCAAGAGGCTTTCGGGGACTGAGGGAACCTTCTTCTTTCTAATAAAAAAAAAGGTAGCACATTTGTCATTTCCCTGGTAACAGCATTAGGCCTGCAGAGCGGACTATCATAATGACAACTATGTCACGTTAAAAAAAAAAAAAG

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU34684 False 1034 lncRNA 0.31 4 10732387 10735356
TU34686 False 1199 lncRNA 0.45 5 10732387 10735643
TU34687 False 1110 lncRNA 0.47 6 10732387 10736123
TU34682 False 1160 lncRNA 0.45 5 10732810 10736123
TU34689 True 1247 lncRNA 0.44 4 10732810 10735643
Loading

Neighbor


gene id symbol gene type direction distance location
CI01000004_10712377_10730563 KCNB2 coding upstream 1824 10712377 ~ 10730563 (+)
CI01000004_10683400_10692323 NA coding upstream 39822 10683400 ~ 10692565 (+)
CI01000004_10630265_10647904 NA coding upstream 84483 10630265 ~ 10647904 (+)
CI01000004_10610634_10613290 ENG2B coding upstream 118757 10609780 ~ 10613630 (+)
CI01000004_10582152_10586349 HTR5AB, HTR5A, HTR5AA coding upstream 145834 10582121 ~ 10586553 (+)
CI01000004_10736615_10738593 RDH10, RDH10B coding downstream 492 10736615 ~ 10739026 (+)
CI01000004_10767883_10769627 TMEM70 coding downstream 31760 10767883 ~ 10769753 (+)
CI01000004_10827227_10829982 PI15B, PI15 coding downstream 90839 10826962 ~ 10831024 (+)
CI01000004_10835420_10847343 CRISPLD1B coding downstream 99297 10835420 ~ 10847343 (+)
CI01000004_10867891_10869483 SOCS6B coding downstream 131537 10867660 ~ 10870925 (+)
G30839 NA non-coding upstream 30951 10701224 ~ 10701436 (+)
G30689 NA non-coding upstream 35180 10693917 ~ 10697207 (+)
G30787 NA non-coding upstream 257436 10474750 ~ 10474951 (+)
G30780 NA non-coding upstream 278127 10453602 ~ 10454260 (+)
G30688 NA non-coding upstream 284650 10436230 ~ 10447737 (+)
G30861 NA non-coding downstream 14711 10750834 ~ 10751295 (+)
G30863 NA non-coding downstream 17834 10753957 ~ 10754306 (+)
G30864 NA non-coding downstream 19129 10755252 ~ 10755575 (+)
G30870 NA non-coding downstream 25691 10761814 ~ 10763042 (+)
G30872 NA non-coding downstream 41180 10777303 ~ 10777535 (+)
G30797 NA other upstream 234599 10497376 ~ 10497788 (+)
CI01000004_08976512_08980033 TTPA other upstream 1751403 8976254 ~ 8980984 (+)
G28859 NA other upstream 2132784 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 2281160 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 3076004 7654234 ~ 7656383 (+)
G31710 NA other downstream 901128 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 928650 11666900 ~ 11667659 (+)
G31865 NA other downstream 1456007 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 1906631 12646838 ~ 12652570 (+)
CI01000004_14036114_14036449 KIAA0040 other downstream 3287424 14035393 ~ 14039142 (+)

Expression


G30678 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 750.
End of interactive chart.

G30678 Expression in each Bioproject

Bar chart with 44 bars.
G30678 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60000.
End of interactive chart.

Co-expression Network