Item | Value |
---|---|
gene id | G30678 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000004 |
NCBI id | null |
chromosome length | 17451736 |
location | 10732387 ~ 10736123 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU34684 | False | 1034 | lncRNA | 0.31 | 4 | 10732387 | 10735356 |
TU34686 | False | 1199 | lncRNA | 0.45 | 5 | 10732387 | 10735643 |
TU34687 | False | 1110 | lncRNA | 0.47 | 6 | 10732387 | 10736123 |
TU34682 | False | 1160 | lncRNA | 0.45 | 5 | 10732810 | 10736123 |
TU34689 | True | 1247 | lncRNA | 0.44 | 4 | 10732810 | 10735643 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000004_10712377_10730563 | KCNB2 | coding | upstream | 1824 | 10712377 ~ 10730563 (+) |
CI01000004_10683400_10692323 | NA | coding | upstream | 39822 | 10683400 ~ 10692565 (+) |
CI01000004_10630265_10647904 | NA | coding | upstream | 84483 | 10630265 ~ 10647904 (+) |
CI01000004_10610634_10613290 | ENG2B | coding | upstream | 118757 | 10609780 ~ 10613630 (+) |
CI01000004_10582152_10586349 | HTR5AB, HTR5A, HTR5AA | coding | upstream | 145834 | 10582121 ~ 10586553 (+) |
CI01000004_10736615_10738593 | RDH10, RDH10B | coding | downstream | 492 | 10736615 ~ 10739026 (+) |
CI01000004_10767883_10769627 | TMEM70 | coding | downstream | 31760 | 10767883 ~ 10769753 (+) |
CI01000004_10827227_10829982 | PI15B, PI15 | coding | downstream | 90839 | 10826962 ~ 10831024 (+) |
CI01000004_10835420_10847343 | CRISPLD1B | coding | downstream | 99297 | 10835420 ~ 10847343 (+) |
CI01000004_10867891_10869483 | SOCS6B | coding | downstream | 131537 | 10867660 ~ 10870925 (+) |
G30839 | NA | non-coding | upstream | 30951 | 10701224 ~ 10701436 (+) |
G30689 | NA | non-coding | upstream | 35180 | 10693917 ~ 10697207 (+) |
G30787 | NA | non-coding | upstream | 257436 | 10474750 ~ 10474951 (+) |
G30780 | NA | non-coding | upstream | 278127 | 10453602 ~ 10454260 (+) |
G30688 | NA | non-coding | upstream | 284650 | 10436230 ~ 10447737 (+) |
G30861 | NA | non-coding | downstream | 14711 | 10750834 ~ 10751295 (+) |
G30863 | NA | non-coding | downstream | 17834 | 10753957 ~ 10754306 (+) |
G30864 | NA | non-coding | downstream | 19129 | 10755252 ~ 10755575 (+) |
G30870 | NA | non-coding | downstream | 25691 | 10761814 ~ 10763042 (+) |
G30872 | NA | non-coding | downstream | 41180 | 10777303 ~ 10777535 (+) |
G30797 | NA | other | upstream | 234599 | 10497376 ~ 10497788 (+) |
CI01000004_08976512_08980033 | TTPA | other | upstream | 1751403 | 8976254 ~ 8980984 (+) |
G28859 | NA | other | upstream | 2132784 | 8599235 ~ 8599603 (+) |
CI01000004_08414451_08436256 | NA | other | upstream | 2281160 | 8414316 ~ 8439933 (+) |
CI01000004_07654234_07655677 | MRPL34 | other | upstream | 3076004 | 7654234 ~ 7656383 (+) |
G31710 | NA | other | downstream | 901128 | 11637251 ~ 11642400 (+) |
CI01000004_11666900_11667179 | NA | other | downstream | 928650 | 11666900 ~ 11667659 (+) |
G31865 | NA | other | downstream | 1456007 | 12192130 ~ 12197418 (+) |
CI01000004_12646972_12652534 | NA | other | downstream | 1906631 | 12646838 ~ 12652570 (+) |
CI01000004_14036114_14036449 | KIAA0040 | other | downstream | 3287424 | 14035393 ~ 14039142 (+) |