abtb1 (abtb1,LOC107674366,LOC107696919,LOC107751593)


Basic Information

Item Value
gene id abtb1
gene name abtb1,LOC107674366,LOC107696919,LOC107751593
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3726570 ~ 3737104 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247098.1
TTCCTGTTTACGTTCGCCGAGCGCTTCCACAGTGCGAGAAGAAACAGCAGACGTCGCGAACTGCACCTGGAAACAGGCTCCGCGTTAGTTTTGTTCAGAGCCGTCGCTGTCCGTGCGTCTGCAGCCGATCCTGTCTGTTAGGCAGGCCGTTTCAATGCATTTCAGAGAAGCTTTACCGCCGCGCAGATGGACGCTGTTGATCTGTTTTCAAGCTGCAGAAAGGGCGACATTGCCAGAGTGAGatacCTGGTTGAACAGAGGGACGTAGAACTGAACATCAGAGATAAGTGGGACAGCACACCTCTGTATTATGCATGTCTCTGCGGACATGAAGAGCTGGTGCAGTACTTGCTTGCCAACGGAGCAAAGTGTGAGGCGAACACGTTTGACGGCGAGCGCTGTCTGTACGGAGCGCTGAGCGACCCCATCCGCCGCCTGCTTAAAGAGTACAAGCGCATCACGGCCAAGGCCATGCAGAGGGACTATTACGACCAGTTCCTGCAGACGCTTTTGGAGCAGGGAAACTACGGCGACGTGACGTTTATGGTGCACGGCGAGATGTTTAAGGCGCACCGCTGCATCTTGAGCGCCAGATCTGAGTACTTCGCTCACATGCTGGAGACCAAGTGGAGGGGGAAGGCTGACATCCCCCTCAAACATCCACTGGTCAACCCTGCTGCGTTTGGCGCGATCATGCAGTATTTCTACACTGGCCGTTTGGATATAGATGTGAATTACGTGGAGGACTGCAAGCGTTTGGCCAAACAGTGTAAGATCAGCGAGCTGATCGAGGAGCTGGAAGTGAAGTGCAAACAGGTTTATGAGTTCGTGTCTAACAAGCCCGGGACGTGCGTGAAGGTGCTGACTCTGGACCCTCATGACTTTCAGCTGCAGGACGGAATGGCTCTGCTGGCCGACAGCGCACTTCCTGCTGAGCTGCGGGTTGGATACGGTCAGCTCCCGTTCGATCTGACTGATAGTTTTCCCAGTTACCCTGACATCTGCTTCCGGGTGGAGGGCTATGACTTCCTGTGTCATAAGGCGTTTTTCTGTGGCCGTAGCGATTATTTTAAGGCGCTGTTGGAGGATCATTTCAGCGAGGGTGAAACTCTGCAGACTCATCCCAGTATTCCTGTCATCACCCTTCATGACGTGTCTCACGATCTGTTTACAAGAAtcctttattacatttacagcgATAACACTCagCTCTCTCATGAGAACGTGTATGAGGTTCTGTGCGTGGCTGACATGTACCTGTTACCGGGTCTGAAGCGTCTGTGCGGCAGGACTCTGGCTGTGCTGCTGAATGAGGAGAACGTGCTGCACATGTGGAAGACGGCCAAACTCTTCCGGCTGTCGCGCCTGGAGGACCAGTGCACGGAGTACATGGCCAAGATCATAGAGAGGCTGGTGGAAAGGCCGGAGTTTGCTGACATGATCAGAGAGGATGCTGGGAACGTGGCTGCCAGGCAGGAAACCGACTCCATCCCTCTGGTAGACGAGATCCGTTTCCACATCGCCAGTAACGTTCAGACGTACAGCGCCATCGAGGAGGCGAACCAGAAGCTCAGCGCCCTGGAGCTCCTGCTGGCCAGCATCGGGCTGGAGTGCTGAGAAGCACGAGCCGCCGGATCCGTCCGATGCTTCGCGCGCACAAATAACCCGTAGCAAACTAGCACCACGTATATGGTCAATTCTAACCAAAAACAAGCGTATGTAGAGTCATTGTGCGTCGCGCTGCAGTGGCCTGCTGTGATGCGGTCAAGCTTCCTGTCTTCAGTTGTTTtcgttgtgtttttttaatgagcgAGAAGAGAGACGAAAGCTTGACGTTCTGGTTATTTCACCGGTAGTGAGCCTTATATATCAGAACAAGTTCTTGACGTTTGCACATACGCCGTTCGCTCTTCCACGTGCGTCGCGACCGATGTAGCGGAATATTTAACAAGCTTCATAGGAGACCCCGAAACGTTGCGGACTATGCTGTTACGATTTGAGCCAACGATTAAATGTAGGGTGAGGACgatttattgaaatgcatttaagaGAAGGAGTGCATCGAAAAATAATCTCTTTTTGAGATGTTAACGTTTTAGGTTAATCCCTTTTTGATCCAAGGATGAATTCTGAAAGGCGTTGGTGTGATAGTTTGCCATTTGTTTAACCAAACAGGTGATTATTTATGCCTTGCGACGCGTGCTCACTTAGAAATGTATCTTCCGGCACTGATAGAGAAGTTTTCCAGCTTTGCATCCACAGACTTCTGGTAATACGCATGCAATATTTGCATAAAGTCACTCAGTCAGGATACGTCCTAAAGCACTTAATATTTCTCCAGCTATATTTTCTTTCTGCATCgctttgattttatttggtagccttttatttattgtattttacgTCGGTCTTAAAGCATATCCCGTGCTTATTTGCTCAGCGGCacttgtttatgtttgtttctgAACATCCCGCATCTGAGACCTGTGCGTGGACTTTGACGTCCGTTTACTAGCTGATTTTCTTTCCTATGATTCATCGTGGGACGCTCCGACTGAATGGGATGTACATAcatgagcaaaaataaatattatttaatgta

Function

symbol description
abtb1 Orthologous to human ABTB1 (ankyrin repeat and BTB domain containing 1).

NR:

description
ankyrin repeat and BTB/POZ domain-containing protein 1 isoform X2

GO: NA

KEGG:

id description
K10520 ABTB1, BPOZ; ankyrin repeat and BTB/POZ domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247098.1 True 2602 mRNA 0.50 12 3726570 3737104

Neighbor

gene id symbol gene type direction distance location
gpd1a gpd1a,LOC107696907,LOC107751598,LOC107552204,LOC106571950,LOC106566713 coding upstream 15535 3704865 ~ 3711035 (+)
asic1a asic1a,LOC107584862,LOC107751588,LOC107696918,LOC107674327,LOC107714557,LOC108439661 coding upstream 22846 3681533 ~ 3703724 (+)
nefmb nefmb,LOC107714570,LOC107674305,LOC107751590,LOC107552168,LOC107751596,LOC107696904 coding upstream 74503 3648002 ~ 3652067 (+)
LOC122350663 tas2r202,LOC107696909,LOC107713025,LOC107552176,LOC107584865,LOC107714564 coding upstream 150020 3575531 ~ 3576550 (+)
vsig8b LOC107696914,LOC107713026,LOC107552198,LOC107714559,LOC107584864,LOC107674302 coding upstream 157653 3555598 ~ 3568917 (+)
slc6a6a slc6a6a,LOC107696920,LOC107552205,LOC107714566,LOC108264963,LOC107674322 coding downstream 6381 3743485 ~ 3765088 (+)
LOC122350989 LOC107751585,LOC107696922,LOC107552208,LOC107584868,LOC107674323,LOC107584869 coding downstream 63174 3800278 ~ 3807847 (+)
LOC122350007 LOC107552172 coding downstream 91405 3828509 ~ 3834154 (+)
pcsk1nl pcsk1nl,LOC107743122,LOC107552210,LOC107701826,LOC107584871,LOC107674382 coding downstream 98692 3835796 ~ 3845945 (+)
fgd1 fgd1,LOC107552218,LOC107727417 coding downstream 195686 3932790 ~ 3979201 (+)
G60743 NA non-coding upstream 70638 3654761 ~ 3655932 (+)
LOC122350949 NA non-coding upstream 118593 3607315 ~ 3607977 (+)
G60728 NA non-coding upstream 146588 3579502 ~ 3579982 (+)
G60718 NA non-coding upstream 156286 3569494 ~ 3570284 (+)
G60673 LOC107699615,LOC107552196 non-coding upstream 640197 3085756 ~ 3086373 (+)
G60782 NA non-coding downstream 87798 3824902 ~ 3826416 (+)
G60803 LOC107552212,LOC107701823,LOC107743103,LOC107674315,LOC107727414 non-coding downstream 147778 3884882 ~ 3885873 (+)
G60870 NA non-coding downstream 170608 3907712 ~ 3908800 (+)
G60895 NA non-coding downstream 403505 4140609 ~ 4215206 (+)
G61007 NA non-coding downstream 564568 4301672 ~ 4342107 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 1686734 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 1690590 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 1706536 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 1808199 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 2507766 1210815 ~ 1218804 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 111510 3848614 ~ 3850557 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 187757 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 292199 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 1367466 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 1489848 5226952 ~ 5229608 (+)

Expression


Co-expression Network