Item | Value |
---|---|
gene id | fgfr1a |
gene name | fgfr1a,LOC107710851,LOC107698118,LOC107553171,LOC107678428,LOC107721100 |
gene type | coding |
species | tiger barb (Puntius tetrazona) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_056706.1 |
NCBI id | CM032075.1 |
chromosome length | 24299999 |
location | 21270648 ~ 21305779 (+) |
genome version | ASM1883169v1_2021_tiger_barb_Genome |
symbol | description |
---|---|
fgfr1a | Enables fibroblast growth factor-activated receptor activity. Acts upstream of or within several processes, including animal organ development; fin regeneration; and negative regulation of endodermal cell fate specification. Predicted to be located in plasma membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including head; integument; intestine; nervous system; and trunk vasculature. Human ortholog(s) of this gene implicated in several diseases, including Jackson-Weiss syndrome; bone disease (multiple); cleft lip; hematologic cancer (multiple); and hypogonadotropic hypogonadism (multiple). Orthologous to human FGFR1 (fibroblast growth factor receptor 1). |
description |
---|
fibroblast growth factor receptor 1-A-like isoform X6 |
id | name | namespace |
---|---|---|
GO:0048738 | cardiac muscle tissue development | biological_process |
GO:0018108 | peptidyl-tyrosine phosphorylation | biological_process |
GO:0043589 | skin morphogenesis | biological_process |
GO:0036342 | post-anal tail morphogenesis | biological_process |
GO:0060173 | limb development | biological_process |
GO:0043406 | positive regulation of MAP kinase activity | biological_process |
GO:0008543 | fibroblast growth factor receptor signaling pathway | biological_process |
GO:0009953 | dorsal/ventral pattern formation | biological_process |
GO:0031101 | fin regeneration | biological_process |
GO:0008284 | positive regulation of cell population proliferation | biological_process |
GO:0060249 | anatomical structure homeostasis | biological_process |
GO:0001889 | liver development | biological_process |
GO:0048916 | posterior lateral line development | biological_process |
GO:0042664 | negative regulation of endodermal cell fate specification | biological_process |
GO:0010863 | positive regulation of phospholipase C activity | biological_process |
GO:0005829 | cytosol | cellular_component |
GO:0005887 | integral component of plasma membrane | cellular_component |
GO:0005634 | nucleus | cellular_component |
GO:0005524 | ATP binding | molecular_function |
GO:0008201 | heparin binding | molecular_function |
GO:0017134 | fibroblast growth factor binding | molecular_function |
GO:0005007 | fibroblast growth factor-activated receptor activity | molecular_function |
id | description |
---|---|
K04362 | FGFR1, CD331; fibroblast growth factor receptor 1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_043247131.1 | True | 4710 | mRNA | 0.51 | 18 | 21270648 | 21305779 |
XM_043247132.1 | False | 4704 | mRNA | 0.51 | 18 | 21270648 | 21305779 |
XM_043247133.1 | False | 4701 | mRNA | 0.51 | 18 | 21270648 | 21305779 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
kctd9a | kctd9a,kctd9,LOC107721077,LOC107678460,LOC107559451,LOC107698117,LOC107710853,LOC107553135 | coding | upstream | 68780 | 21195587 ~ 21201868 (+) |
npy8br | npy8br,LOC107553136,LOC107698094,LOC107678390,LOC107710829,LOC107721072,LOC107563168,LOC105902741 | coding | upstream | 95113 | 21158957 ~ 21175535 (+) |
tbx16 | LOC107698093,LOC107747799,LOC107556237,LOC107563178,LOC107678363,LOC107721106 | coding | upstream | 153116 | 21107725 ~ 21117532 (+) |
cabin1 | cabin1,LOC107698076,LOC107721099,LOC107747802,LOC107556211 | coding | upstream | 164706 | 21036815 ~ 21105942 (+) |
cep78 | cep78,LOC107556223,LOC107747798,LOC107698114,LOC107678469 | coding | upstream | 235478 | 21027794 ~ 21035170 (+) |
lgi3 | lgi3,LOC107698096,LOC107678470,LOC107559454,LOC107553170,LOC108426696 | coding | downstream | 7925 | 21313704 ~ 21325204 (+) |
LOC122351127 | NA | coding | downstream | 20567 | 21326346 ~ 21326464 (+) |
LOC122351136 | NA | coding | downstream | 22907 | 21328686 ~ 21328804 (+) |
LOC122351138 | NA | coding | downstream | 25263 | 21331042 ~ 21331160 (+) |
chmp7 | chmp7,LOC107710849,LOC107698119,LOC107559457,LOC107678414,LOC107553169 | coding | downstream | 31488 | 21337267 ~ 21344907 (+) |
G65769 | NA | non-coding | upstream | 244810 | 21025397 ~ 21025838 (+) |
G65768 | NA | non-coding | upstream | 251112 | 21019292 ~ 21019536 (+) |
G65754 | NA | non-coding | upstream | 327269 | 20939422 ~ 20943379 (+) |
LOC122350852 | NA | non-coding | upstream | 482308 | 20785366 ~ 20788340 (+) |
G65552 | NA | non-coding | upstream | 511404 | 20725202 ~ 20759244 (+) |
G65913 | LOC107710826,LOC107665200,LOC107553133,LOC107575786 | non-coding | downstream | 189033 | 21494812 ~ 21495538 (+) |
G65914 | LOC107710826,LOC107665200,LOC107553133,LOC107575786 | non-coding | downstream | 190647 | 21496426 ~ 21509076 (+) |
G65944 | NA | non-coding | downstream | 330342 | 21636121 ~ 21698404 (+) |
G65951 | NA | non-coding | downstream | 424795 | 21730574 ~ 21731140 (+) |
G65953 | NA | non-coding | downstream | 428983 | 21734762 ~ 21735247 (+) |
ankrd39 | LOC107721080,LOC107678427,LOC107559444 | other | upstream | 66302 | 21202448 ~ 21204346 (+) |
rnf122 | si:ch1073-392o20.1,rnf122,LOC107747807,LOC107678386,LOC107698113,LOC108440685,LOC107563167 | other | upstream | 298608 | 20958600 ~ 20972040 (+) |
LOC122350816 | slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC107756821,LOC107566956 | other | upstream | 838816 | 20423281 ~ 20431832 (+) |
timm17b | timm17b,LOC107722912 | other | upstream | 1131284 | 20135119 ~ 20139364 (+) |
rfk | rfk,LOC107740987,LOC107723557 | other | upstream | 1237041 | 20030034 ~ 20033607 (+) |
slc25a37 | slc25a37,LOC107710846,LOC107747712,LOC107559458,LOC107678377 | other | downstream | 53458 | 21359237 ~ 21374625 (+) |
LOC122350761 | rhobtb2,LOC107553166,LOC107678456,LOC107718938,LOC107665202,LOC107710844 | other | downstream | 164211 | 21469990 ~ 21538986 (+) |
b2ml | LOC107562648,LOC107710837,LOC107665198,LOC107728367 | other | downstream | 445983 | 21751762 ~ 21754720 (+) |
G65992 | LOC107553157,LOC107661339 | other | downstream | 633367 | 21939146 ~ 21940924 (+) |
G65995 | NA | other | downstream | 644109 | 21949888 ~ 21961845 (+) |