cebpb (cebpb,LOC107556312,LOC107669676,LOC107751442,LOC107594515,LOC107679873,LOC107711812)


Basic Information

Item Value
gene id cebpb
gene name cebpb,LOC107556312,LOC107669676,LOC107751442,LOC107594515,LOC107679873,LOC107711812
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 13639945 ~ 13641482 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247173.1
GGAACTGACTCGAGCTCTCCAGCGAGCGCTGGGCAAGCAACCTATCGCCTACAGAACTAGACAAAAGTCATCTGGTTATTTCTACCGACGGAACGCGCTCGATTTTCCGCGTGAGTTTTTTACGCCGCGGCCGGTGACACTTGCGAAGTTGTCAGGGGAAGGCGAGACCCTGATCTCCGTCCTGCCGCAATCCGGCGGGTGTTAAGATCCATGGAAGTGGCCGGTTTTTACGAGGGGGACTACCTCGCTTTCCACAGCACTAACGCCAGCAGCAGTCCGGTCAGCGACGGCAATTGCAAGCAGCCCACGAACGGCTCCATGACGAAGCTTCATGACATTTCTGAGCACGAGAAAGCCATAGACTTCAGCATCTATTTGGACTCGCCCCAGTACCAGCATCTGTCCAGCCAAGACGAAGCCCGGCACCGCGCACTGGGAATCTACAGCGACTTTCTCTCCGAGGAAAACAAGAGCAAGAGAGCGGCATTACAGAGCTACAAGAACTACATCTCGCTGACGGAGCGGGACTCGAACCAGCTGGCGTACCCGGAGCTCCAGGAGACGCGCATAGACGCCGTGTTCAGCCCGGACTTTCTGGGCAGTTTTGCCAAAACTAACTGGCGACACGAAGAGCCGCCGATGGATGGTTCCGGGAGCTTTGACATGCGCTCGTATCTGCAGTACCAGAACGCTCCTAGCGGCAGCCTGGGCAACATTTCCACCGCGTCCTCCTCCTGCTCGAGCCCGCCAGGTACACCTGCGCCGCCAGGTAAGGGAAGATCACCTCAGTCTGGCGGCAAGATGGCCTCTGGCGGCAAAGGGAAGAAAAGGCTGGAGAAGGACAGTGAAGAGTACAGACAGCGGCGCGAGAGAAACAATCTCGCCGTCCGCAAAAGCAGAGACAAAGCCAAAATGCGCAACCTGGAGACGCAGCACAAAGTGCTGGAGCTCGCGGCCGAGAACGACCGGTTACAGAAGCGCGTGGAGCAGCTGTCGCGCGAGCTGGCGACGCTGCGCAACCTGCTCTCCGCCACCGGCCAGTGCTGACGGGACTCCTGCGGTGCTTGGTGACCGTGAGTGACTTTCGAGAGTGCAGAATTTACAactaaagttgttgttttttttcttcttctgcgaTTCGTTTAAAAACGGGCGATCGCTCGTTCGACGCGTTTACAAccgagaagagaaaaaaaaaccatgaaaCTGGACTGTGCGCCTGGATTGCGCAATATCCCACCGTGTGCTCGGCATAACTCTGGTAATCTGGAAACCCTGTCATGTATTTCGTctgtaaagtatttttgtacGGGTTTTAAAGTGAGATATCTACTGTTTAATATTCTgttatttaaattcttttcGCCATATCTGGGGCAGTGGTTGTCATGGGAAGAGTTGTACTGCAGAGGTATGATGCAACTCATTGTAACAGTATTGGAAACGCAGTGAAGTGGTCTTATAAAAATGAGAAAGGTACAACTGGTCTACTGctatatactattttattgaattaaatgatttttactgtactggAA

Function

symbol description
cebpb Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within regulation of DNA methylation; response to bacterium; and response to yeast. Predicted to be located in nucleus. Is expressed in several structures, including EVL; digestive system; macrophage; periderm; and yolk syncytial layer. Orthologous to human CEBPB (CCAAT enhancer binding protein beta).

NR:

description
CCAAT/enhancer-binding protein beta

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009617 response to bacterium biological_process
GO:0001878 response to yeast biological_process
GO:0044030 regulation of DNA methylation biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10048 CEBPB; CCAAT/enhancer binding protein (C/EBP), beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247173.1 True 1538 mRNA 0.53 1 13639945 13641482

Neighbor

gene id symbol gene type direction distance location
adipor1b adipor1b,LOC107751445,LOC107679819,LOC107594512,LOC107711855 coding downstream 24607 13608854 ~ 13615338 (-)
LOC122351021 klhl12,LOC107679803,LOC107556315,LOC107711853,LOC107751446,LOC107594517 coding downstream 31668 13599250 ~ 13608277 (-)
tuba5 tuba8l,LOC108265838,LOC108425079,LOC107679810,LOC107711852,LOC107594520,LOC103031418 coding downstream 42098 13593701 ~ 13597847 (-)
kdm5bb LOC107751449,LOC107556320,LOC107711851 coding downstream 48769 13571079 ~ 13591176 (-)
LOC122350644 LOC107556303,LOC107669603,LOC107751461,LOC107679797,LOC107711850,LOC107594521 coding downstream 69113 13562956 ~ 13570832 (-)
LOC122350319 LOC107574771,LOC107751454,LOC107669655 coding upstream 531572 14173054 ~ 14175823 (-)
LOC122350320 prf1.5,LOC107751453,LOC107574770,LOC107594505,LOC107711865,LOC107679935 coding upstream 540050 14181532 ~ 14186141 (-)
mpeg1.1 mpeg1.1,LOC107724877,LOC107669601,LOC107602834,LOC107679909,LOC107724864,LOC107751428,LOC107602817 coding upstream 545947 14187429 ~ 14190244 (-)
LOC122349900 LOC107724883,LOC107580262,LOC107669607 coding upstream 552351 14193833 ~ 14194501 (-)
slc20a2 slc20a2,LOC107724891,LOC107669617,LOC107602837,LOC107594502,LOC107711867 coding upstream 583874 14225356 ~ 14259044 (-)
G63751 NA non-coding downstream 289674 13347624 ~ 13350271 (-)
G63745 NA non-coding downstream 307558 13332164 ~ 13332387 (-)
G63735 NA non-coding downstream 365077 13261692 ~ 13274868 (-)
G63711 NA non-coding downstream 508728 13128190 ~ 13131217 (-)
G63631 LOC107591782,LOC107669630,LOC107711933,LOC107679511 non-coding downstream 839202 12797379 ~ 12800743 (-)
G63866 NA non-coding upstream 46696 13688178 ~ 13693222 (-)
G63867 NA non-coding upstream 58175 13699657 ~ 13700068 (-)
G63868 NA non-coding upstream 69673 13711155 ~ 13712401 (-)
G63873 NA non-coding upstream 82249 13723731 ~ 13724000 (-)
G63874 NA non-coding upstream 83587 13725069 ~ 13725474 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other downstream 393815 13185867 ~ 13246130 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other downstream 556573 12985654 ~ 13083372 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other downstream 1135792 12489197 ~ 12504153 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other downstream 1276841 12342160 ~ 12363104 (-)
G63385 NA other downstream 1375412 12263694 ~ 12264533 (-)
mc3r mc3r,LOC107751459,LOC107669608,LOC107711834,LOC107680356 other upstream 75146 13716628 ~ 13720514 (-)
G63933 LOC107556304,LOC107751435,LOC107594508 other upstream 167946 13809428 ~ 13863250 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other upstream 744118 14385600 ~ 14455243 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other upstream 1082230 14723712 ~ 14731391 (-)
G64228 NA other upstream 1138049 14779531 ~ 14781710 (-)

Expression


Co-expression Network