Gene
RNA
| Item | Value |
|---|---|
| gene id | G31204 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 10750849 ~ 10752367 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU35314 | True | 1519 | lncRNA | 0.32 | 1 | 10750849 | 10752367 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_10692864_10704094 | TRPA1A | coding | downstream | 46755 | 10692637 ~ 10704094 (-) |
| CI01000004_10619819_10627261 | CNPY1 | coding | downstream | 123588 | 10619019 ~ 10627261 (-) |
| CI01000004_10553379_10573352 | PAXIP1 | coding | downstream | 175606 | 10553037 ~ 10575243 (-) |
| CI01000004_10458668_10465442 | NA | coding | downstream | 285146 | 10458662 ~ 10465703 (-) |
| CI01000004_10436514_10438365 | NA | coding | downstream | 311390 | 10436499 ~ 10439459 (-) |
| CI01000004_10757852_10760211 | NA | coding | upstream | 5176 | 10757543 ~ 10761142 (-) |
| CI01000004_10766385_10766860 | TCEB1B, TCEB1, GM14517, TCEB1A | coding | upstream | 13973 | 10766340 ~ 10766860 (-) |
| CI01000004_10788659_10809214 | JPH1B, JPH1 | coding | upstream | 36292 | 10788659 ~ 10809805 (-) |
| CI01000004_10847650_10847940 | NA | coding | upstream | 95190 | 10847557 ~ 10847995 (-) |
| CI01000004_10884499_10886045 | CBLN2A, CBLN2, CBLN2B | coding | upstream | 132059 | 10884426 ~ 10886045 (-) |
| G31200 | NA | non-coding | downstream | 23707 | 10726912 ~ 10727142 (-) |
| G31196 | NA | non-coding | downstream | 37918 | 10712286 ~ 10712931 (-) |
| G31145 | NA | non-coding | downstream | 57115 | 10693367 ~ 10693734 (-) |
| G31148 | NA | non-coding | downstream | 69842 | 10676417 ~ 10681007 (-) |
| G31206 | NA | non-coding | upstream | 2862 | 10755229 ~ 10755530 (-) |
| G31212 | NA | non-coding | upstream | 19958 | 10772325 ~ 10772526 (-) |
| G31224 | NA | non-coding | upstream | 65783 | 10818150 ~ 10818353 (-) |
| G31234 | NA | non-coding | upstream | 79154 | 10831521 ~ 10831904 (-) |
| G31243 | NA | non-coding | upstream | 97064 | 10849431 ~ 10849634 (-) |
| G31203 | NA | other | downstream | 208 | 10746437 ~ 10750641 (-) |
| G30316 | NA | other | downstream | 1343928 | 9377937 ~ 9406921 (-) |
| G29746 | NA | other | downstream | 2392722 | 8354498 ~ 8358127 (-) |
| G29656 | NA | other | downstream | 2785349 | 7964364 ~ 7965500 (-) |
| G29388 | NA | other | downstream | 4118942 | 6631293 ~ 6631907 (-) |
| CI01000004_11407198_11412220 | ADCYAP1B, ADCYAP1 | other | upstream | 655098 | 11406957 ~ 11412907 (-) |
| G32150 | NA | other | upstream | 1024152 | 11776519 ~ 11780951 (-) |
| G32207 | NA | other | upstream | 1623801 | 12376168 ~ 12384780 (-) |
| CI01000004_14543631_14551256 | NA | other | upstream | 3798433 | 14541515 ~ 14551352 (-) |
| G33746 | NA | other | upstream | 3816426 | 14568793 ~ 14569264 (-) |
