lsm1 (lsm1,LOC107571959,LOC107548281)


Basic Information

Item Value
gene id lsm1
gene name lsm1,LOC107571959,LOC107548281
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20266843 ~ 20269416 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247184.1
GAGCGCTGCGGTGACGCCACTCTTATGTGACAACGGTATGTTTCTTGTAATGGGAAGTCCGTTATTGCGAATCGGTTCTTTTCAAGAGATTCTTTTCAGCGATTCTTTTACATCCAAAACACAATCGTCACAGAAACACCTTGTTCTGCTTCGCGATGGAAGAACATTGATTGGGATCCTCAGAAGCATAGATCAGTTTGCTAATTTAGTTTTGCATCAAACCGTTGAACGCATCCACGTCGGGAAGAAATTTGGTGACATACCTCGTGGGATATTTGTTGTCAGAGGAGAGAATGTCGTCTTGCTCGGAGAAGTAGATCTGGATAAAGAGTGTGATCAGATCCTCCAGAGAGTTTCCATTGAGGAGATCCTGGAGGAACAGCGGACAGAACAGCAAGCCAAGCAAGAGTCGGAGAGATTGAAGCTGCAGGCGGTGAAAGAGCGAGGCTTATCGATTCCTAAAGCCGACACGTTAGATGACTTCTGAAACATCTTTAGTTCTTTTTggatgattttatttgttttattgggtgtttttttttttatctgaggTCATTCTGTATAAATGATTGAGGAGTGAGCGTCAGATTTAGTTTCACTAGTTGCTGTAAAGTCATGTTTTGAGAACCGCACACCgtctttgtttctttcatgGCATGATGCCACAGCGAAATGAAAGATGGCGCACCAAACCGAAGCGCTTGGCCGGTCGGCTTTGTTTAAACGACAATAATGGTATACAAGGAAATAAGTTTATTTCAGTGTTCACTATGTTATGGATATGACGCTACGATTAAGTTGGTATATTATGTAAAACGCACGAAAACAACactgaagatatttttgttctATTAAACCTATTTTATACCAATGAAAA
>XM_043247185.1
CAGTGTAGTGTAGttcaaaaataaactgaatgtaAGCTTGGGGCATTTGGAGCGAGCAAGCGAGagtttaaagggttaaaatgaACCGGAAGCACTTTCACGGTGTTACATCCTGTGGAAATAAGGATACACATTTGAAATGGTCCATGGCTTGATACtttacgtttaaaaaaaatctcccaAATGTCAGCAGAATGAATTACATGCCAGGGACCGCGAGCCTCATCGAGGACATTGATAAGAAACACCTTGTTCTGCTTCGCGATGGAAGAACATTGATTGGGATCCTCAGAAGCATAGATCAGTTTGCTAATTTAGTTTTGCATCAAACCGTTGAACGCATCCACGTCGGGAAGAAATTTGGTGACATACCTCGTGGGATATTTGTTGTCAGAGGAGAGAATGTCGTCTTGCTCGGAGAAGTAGATCTGGATAAAGAGTGTGATCAGATCCTCCAGAGAGTTTCCATTGAGGAGATCCTGGAGGAACAGCGGACAGAACAGCAAGCCAAGCAAGAGTCGGAGAGATTGAAGCTGCAGGCGGTGAAAGAGCGAGGCTTATCGATTCCTAAAGCCGACACGTTAGATGACTTCTGAAACATCTTTAGTTCTTTTTggatgattttatttgttttattgggtgtttttttttttatctgaggTCATTCTGTATAAATGATTGAGGAGTGAGCGTCAGATTTAGTTTCACTAGTTGCTGTAAAGTCATGTTTTGAGAACCGCACACCgtctttgtttctttcatgGCATGATGCCACAGCGAAATGAAAGATGGCGCACCAAACCGAAGCGCTTGGCCGGTCGGCTTTGTTTAAACGACAATAATGGTATACAAGGAAATAAGTTTATTTCAGTGTTCACTATGTTATGGATATGACGCTACGATTAAGTTGGTATATTATGTAAAACGCACGAAAACAACactgaagatatttttgttctATTAAACCTATTTTATACCAATGAAAA

Function

symbol description
lsm1 Predicted to enable RNA cap binding activity. Predicted to be involved in deadenylation-dependent decapping of nuclear-transcribed mRNA. Predicted to act upstream of or within mRNA processing and nuclear-transcribed mRNA catabolic process. Predicted to be located in cytoplasm. Predicted to be part of Lsm1-7-Pat1 complex. Predicted to be active in P-body. Orthologous to human LSM1 (LSM1 homolog, mRNA degradation associated).

NR:

description
PREDICTED: U6 snRNA-associated Sm-like protein LSm1 isoform X3

GO: NA

KEGG:

id description
K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247184.1 False 877 mRNA 0.41 4 20266843 20269416
XM_043247185.1 True 986 mRNA 0.41 4 20266843 20268880

Neighbor

gene id symbol gene type direction distance location
grk5l grk5l,LOC107756834,LOC107691567,LOC107548280,LOC107702864 coding downstream 920 20222516 ~ 20265923 (-)
star star,LOC107691570,LOC107571960,LOC107548259,LOC107702817 coding downstream 45964 20216745 ~ 20220879 (-)
elmod3 LOC107756833,LOC107702863,LOC107722433,LOC107571955,LOC107691569 coding downstream 50365 20199656 ~ 20216478 (-)
aebp1b LOC107571966,LOC107756828,LOC107691571,LOC107722622,LOC107702862,LOC107548278 coding downstream 76635 20173175 ~ 20190208 (-)
LOC122350988 LOC107756829,LOC107691572,LOC107571956,LOC107722996 coding downstream 94388 20168530 ~ 20172455 (-)
LOC122350834 LOC107756820,LOC107691590,LOC107591940 coding upstream 83106 20352522 ~ 20356527 (-)
LOC122350835 LOC107691561,LOC107756843,LOC107566957 coding upstream 87234 20356650 ~ 20360170 (-)
mak16 mak16,LOC107591933,LOC107756848,LOC107566970,LOC107702820,LOC107722986,LOC107691589 coding upstream 169846 20439262 ~ 20441908 (-)
LOC122351134 NA coding upstream 183615 20453031 ~ 20453131 (-)
ywhabb ywhabb,LOC107702878,LOC107573968,LOC107756849,LOC107691552,LOC103023259 coding upstream 185214 20454630 ~ 20459028 (-)
G65613 LOC107756819,LOC107723069,LOC107578151,LOC107571958 non-coding downstream 100471 20166056 ~ 20166372 (-)
LOC122350956 NA non-coding downstream 126643 20136603 ~ 20140200 (-)
G65596 adamts13,LOC107725310,LOC107548275,LOC107702807 non-coding downstream 162843 20103337 ~ 20104000 (-)
LOC122349935 NA non-coding downstream 522193 19708097 ~ 19744650 (-)
G65244 NA non-coding downstream 857803 19406755 ~ 19409040 (-)
LOC122350542 rsph14,LOC107756838,LOC107691565,LOC107702819,LOC107723028 non-coding upstream 12166 20281582 ~ 20284840 (-)
G65682 NA non-coding upstream 195135 20464551 ~ 20464756 (-)
LOC122349883 NA non-coding upstream 222433 20491849 ~ 20505973 (-)
G65696 nr6a1a,nr6a1,LOC107721088,LOC107698081 non-coding upstream 290215 20559631 ~ 20559971 (-)
G65697 NA non-coding upstream 297742 20567158 ~ 20570293 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other downstream 132498 20118007 ~ 20134345 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other downstream 833552 19428738 ~ 19433291 (-)
LOC122351133 NA other downstream 1064466 19202277 ~ 19202377 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other downstream 1218874 19023713 ~ 19047969 (-)
G65033 NA other downstream 1706509 18559667 ~ 18560334 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other upstream 145649 20415065 ~ 20421296 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other upstream 449524 20718940 ~ 20723155 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other upstream 745577 21014993 ~ 21025831 (-)
G66086 si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 other upstream 1502052 21771468 ~ 21776620 (-)
G66090 NA other upstream 1515288 21784704 ~ 22254189 (-)

Expression


Co-expression Network