mvb12bb (mvb12b,LOC107550570,LOC107753158,LOC107723228)


Basic Information

Item Value
gene id mvb12bb
gene name mvb12b,LOC107550570,LOC107753158,LOC107723228
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 15649226 ~ 15700896 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247217.1
TTCGCGTAGGCAGTCTGTGCTGTTTGGTTCCCTCAGCAAGCATGGCAGATCTTCAGAACATCTCTGGTGGTAAAGCAGAGCTGCAGCCTGAAGCCATGACTGATATCGGTGTGCTGGCATCCAAGAAAGAACCTCCAGCAGGCTACTATATTGTTGCACAAACAACAGATGGCTTTGACGCCAACCTGTGGAAGGACAGCATATTCAAATCCAAGGTCACACGCTATCTTTGCTTTACCCGAGCTGCCACCTCCAAAAACAAGCAATTATGCAACGTTGTCGTGGACGTGAAGCTGATCGACTTGAAGGACTGTTTGCCAGAGGGCTTCACTCCGATCCAAGAAACCACGGATACCCaggAGCAGGCTTTGAGGAAGGAGAGACTGTGTGTGAAGTTGGTCCCCAGGCACAGCACTGGTACGGCTATATGCGATGTGGTTATACAGGGGAAATCAAAGCACAGCCTCactaattatacatttataggTGAACTGAATGGTTTGGGAATTTGGTATCAGCTGGGAAAAGTCACTAAGTCACAGGATGCAGAGCACAAAATCCCCTCCACCTCTGGTGTTGCCAGACAATTCCCACAGTCTCCGGCCTCCAGTCTTACTAAAAAGAACATGGTTAGGCCAGACTACGAACACCAAATCTACAACCTCTACACCAAATCAGCTATGGATGATATACCCTTTATGATCTCCAAAAAATCTACCTCCACATCCAGAGATGAAATAGATCCAGTCCGTTTCTTGAACATTGCTATCAAATCACCACAACAGATTGAAGAGGAAtACAGCTATTGTTTCAACACTGAACACGGCGCTGCGGCCTTCACATGGACTCAGTGACTGTAGAGAGGGGATTCTCACCATTAACAGTGCATAACTAACTGACCTAACTGTTTATACACACTACTGCTTTCTTCCTCCAGCACTcgttttcttttcagaaaacCTCCCTCTGTCCTTATGCCATACGTGATCAGCTCAAATGGATGCAAAAGTCCTCCCTTGCATGTTTTTCTTATTGATTCTCTTGTTTCACCTATCTTAAGTGAAATAGGTTGTAACCaggttcatttttacatttacattttacatttatgtatgttCTCAGGGAGAtcttaaagtttttgtttttttttcatacttaaaatcattttatttatcttttttctatgtttgatttttaaagaacagttgACTCAAATTTTACACAAATAGAATTGGCCattgtttatcattttatttaatctgagaagaaaaaaaggttttattttcaaagctcttaatttatttttgcgtTTGACATAGTGCtatcataaaattattatactCTGACTCTAGCATTCTCTATTTTGtttctgttatgttttttttttgttcattaat
>XR_006251608.1
GTGAAAAGGACGGTGCAAGGTTGAATATGTTATCTCGGTAGTGATATTCGCGTAGGCAGTCTGTGCTGTTTGGTTCCCTCAGCAAGCATGGCAGATCTTCAGAACATCTCTGGTGGTAAAGCAGAGCTGCAGCCTGAAGCCATGACTGATATCGGTGTGCTGGCATCCAAGAAAGAACCTCCAGCAGGCTACTATATTGTTGCACAAACAACAGATGGCTTTGACGCCAACCTGTGGAAGGACAGCATATTCAAATCCAAGGTCACACGCTATCTTTGCTTTACCCGAGCTGCCACCTCCAAAAACAAGCAATTATGCAACGTTGTCGTGGACGTGAAGCTGATCGACTTGAAGGACTGTTTGCCAGAGGGCTTCACTCCGATCCAAGAAACCACGGATACCCaggAGCAGGCTTTGAGGAAGGAGAGACTGTGTGTGAAGTTGGTCCCCAGGCACAGCACTGGTACGGCTATATGCGATGTGGTTATACAGGGGAAATCAAAGCACAGCCTCactaattatacatttataggTGAACTGAATGGTTTGGGAATTTGGTATCAGCTGGGAAAAGTCACTAAGTCACAGGATGCAGAGCACAAAATCCCCTCCACCTCTGGTGTTGCCAGACAATTCCCACAGTCTCCGGCCTCCAGTCTTACTAAAAAGAACATGGTTAGGCCAGACTACGAACACCAAATCTACAACCTCTACACCAAATCAGaaatgcagccccaaaCGTTCAAGGAACCTCCAgcatgcttcactgttgcctgcagaGACTCATTATTGTACCACTCTCCAGCCCTTCAACGAACAAACTGCCTTCTGCTACAGTCAAATATTTCAATAGGCTCATCAGTCCAGAGaacctgctgccatttttctgcaccCTAGTTCCTATGTTTTCATGCACACTTGAGTTGCTTGGCCTCTTTCCCATGTCGGAGGTATGACTTTTTGACtgcaactcttccatgaagacCACTTCTGCCCGGACAGTAGATGTGTATACCTGGGTTCCACTGGTTTCTGCCAGTTCTGAGCTGATGGCACTACTGGACATCTTCCGATTTCAAAGGCTATGGATGATATACCCTTTATGATCTCCAAAAAATCTACCTCCACATCCAGAGATGAAATAGATCCAGTCCGTTTCTTGAACATTGCTATCAAATCACCACAACAGATTGAAGAGGAA
>XR_006251609.1
GTGAAAAGGACGGTGCAAGGTTGAATATGTTATCTCGGTAGTGATATTCGCGTAGGCAGTCTGTGCTGTTTGGTTCCCTCAGCAAGCATGGCAGATCTTCAGAACATCTCTGGTGGTAAAGCAGAGCTGCAGCCTGAAGCCATGACTGATATCGGTGTGCTGGCATCCAAGAAAGAACCTCCAGCAGGCTACTATATTGTTGCACAAACAACAGATGGCTTTGACGCCAACCTGTGGAAGGACAGCATATTCAAATCCAAGGTCACACGCTATCTTTGCTTTACCCGAGCTGCCACCTCCAAAAACAAGCAATTATGCAACGTTGTCGTGGACGTGAAGCTGATCGACTTGAAGGACTGTTTGCCAGAGGGCTTCACTCCGATCCAAGAAACCACGGATACCCaggAGCAGGCTTTGAGGAAGGAGAGACTGTGTGTGAAGTTGGTCCCCAGGCACAGCACTGGTACGGCTATATGCGATGTGGTTATACAGGGGAAATCAAAGCACAGCCTCactaattatacatttataggTGAACTGAATGGTTTGGGAATTTGGTATCAGCTGGGAAAAGTCACTAAGTCACAGGATGCAGAGCACAAAATCCCCTCCACCTCTGGTGTTGCCAGACAATTCCCACAGTCTCCGGCCTCCAGTCTTACTAAAAAGAACATGGTTAGGCCAGACTACGAACACCAAATCTACAACCTCTACACCAAATCAGCTATGGATGATATACCCTTTATGATCTCCAAAAAATCTACCTCCACATCCAGAGATGAAATAGATCCAGTCCGTTTCTTGAACATTGCTATCAAATCACCACAACAGATTGAAGAGGAAGAGATGGAGGGAGAAAAGGACGAGAGGTTTGTCAGACCGTGACTCGACGTGCTTGAGCTGATGCAGTCATCTGCTTCCAATGTAGAGGAGAGCGGAGGGAGCCATCCATCGCCGGGCACGTGGACTCAACCTTGAGAAGCGTGGATGGAGATTGCGCCGTGTGGTCTTCACTGCACTTCTCTCTTAACAAGCTTGAACCGGACTCGAGGGGGAGACGTCTGGATCTGGCGCAGAGCAAAGAGTGATATCAAAGAGCAAGG

Function

symbol description
mvb12b Enables lipid binding activity. Involved in regulation of epidermal growth factor receptor signaling pathway; viral budding; and virus maturation. Located in several cellular components, including cytosol; endosome; and nucleus. Part of ESCRT I complex.

NR:

description
PREDICTED: multivesicular body subunit 12B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247217.1 True 1397 mRNA 0.41 10 15652830 15700850
XR_006251608.1 False 1201 transcript 0.47 10 15656919 15700896
XR_006251609.1 False 1103 transcript 0.49 11 15649226 15700896

Neighbor

gene id symbol gene type direction distance location
LOC122350591 lmx1b,lmx1bb,LOC107550585,LOC107723253,LOC107564042,LOC107753135,LOC108434405 coding downstream 904 15578108 ~ 15648322 (-)
lmx1bb lmx1bb,lmx1b,LOC107550585,LOC107723253,LOC107753135,LOC107564042 coding downstream 140031 15496493 ~ 15509195 (-)
LOC122350755 zbtb34,LOC107723248,LOC107550586,LOC107727329,LOC107564041,LOC107727326 coding downstream 242056 15393349 ~ 15407170 (-)
ralgps1 ralgps1,LOC107727327,LOC107669254,LOC108412534,LOC107723240 coding downstream 258475 15307737 ~ 15390751 (-)
zgc:194839 LOC107659596,LOC107686408,LOC107723116,LOC107723115,LOC107575379,LOC107723246,LOC107723230,LOC107667514,LOC107570299 coding downstream 348503 15297625 ~ 15300723 (-)
pbx3b pbx3b,pbx3,LOC107550583,LOC107669256,LOC107555108,LOC108434408 coding upstream 133069 15833965 ~ 15948783 (-)
LOC122351126 pbx3b,pbx3,LOC107550583,LOC107669256,LOC108434408,LOC107555108 coding upstream 266604 15967500 ~ 15992258 (-)
LOC122350711 LOC107550583,LOC107555108,LOC107669256 coding upstream 490191 16191087 ~ 16192344 (-)
LOC122350700 LOC107550582,LOC107723237 coding upstream 612608 16313504 ~ 16344494 (-)
setd1bb LOC107659604,LOC107550568,LOC107753154,LOC107669245,LOC107555095 coding upstream 653012 16353908 ~ 16363944 (-)
G64359 hmcn2,LOC107570300,LOC107723245,LOC107659581 non-coding downstream 353005 15295350 ~ 15296221 (-)
G64357 hmcn2,LOC107659581,LOC107723245,LOC107580106 non-coding downstream 356241 15292345 ~ 15292985 (-)
G64356 hmcn2,LOC107570300,LOC107723245,LOC107659581 non-coding downstream 358735 15290269 ~ 15290491 (-)
G64355 NA non-coding downstream 360034 15288911 ~ 15289192 (-)
G64354 NA non-coding downstream 363417 15285600 ~ 15285809 (-)
LOC122351100 NA non-coding upstream 66772 15767668 ~ 15781887 (-)
G64476 gapvd1,LOC107669250,LOC107753155,LOC107555093,LOC107723237,LOC107550582 non-coding upstream 361983 16062879 ~ 16063753 (-)
LOC122351008 NA non-coding upstream 378466 16079362 ~ 16094560 (-)
G64481 NA non-coding upstream 430715 16131611 ~ 16132812 (-)
LOC122350933 NA non-coding upstream 560641 16261537 ~ 16283392 (-)
G64353 hmcn2,LOC107723245,LOC107659581,LOC107570300 other downstream 365096 15283861 ~ 15284130 (-)
G64228 NA other downstream 867516 14779531 ~ 14781710 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other downstream 917835 14723712 ~ 14731391 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other downstream 1193983 14385600 ~ 14455243 (-)
G63933 LOC107556304,LOC107751435,LOC107594508 other downstream 1785976 13809428 ~ 13863250 (-)
LOC122350093 NA other upstream 706938 16407834 ~ 16409696 (-)
LOC122350945 drd2b,LOC107745132,LOC107705176,LOC107691748,LOC107664308,LOC107600777,LOC107556418,LOC108428674 other upstream 1345571 17046467 ~ 17096795 (-)
LOC122350953 NA other upstream 1619480 17320376 ~ 17401228 (-)
zgc:194007 NA other upstream 1658489 17359385 ~ 17361850 (-)
kcnip3a kcnip3a,LOC108440810,LOC107684506,LOC107553838,LOC107566017,LOC102307840,LOC108264878,LOC101482209,LOC103397788,LOC107753121,LOC107687962,LOC102210345,LOC108233759,LOC102228939,LOC102799407,LOC104951840,LOC102798027 other upstream 1900362 17601258 ~ 17645511 (-)

Expression


Co-expression Network