dtx1 (dtx1,LOC107692206,LOC107671029)


Basic Information

Item Value
gene id dtx1
gene name dtx1,LOC107692206,LOC107671029
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1494505 ~ 1523464 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247249.1
cgcgcgcgcacacaagCAACAGTCAGGCGGCGGAGGATGCGCACAACATGAGCAACAGCCAATAGAGCTCATAGAGAGAAGAACACGGTGAATTCCGACTCGTTTAGCGTCGGGAATGCGATCTAGAAACACTCGGCTTGTTCAGATATTCTGGGCTGGATCAGATCTCCGGTTCATCGCTTCACATCACAGAAACTGACAGTCCCGTCCAAGAGCAGCACGTTCTCTTTGGACTGGATCTAGACCTCGGGACGGCAGGATTGGACTCCGATTGTCTGTTTTGGATTATTCTGCTGAGGAGGAGTCACTTCGGAGAGCATGATTACTTCCAGAGCCGGAATACTAGAGACTAATCTAGTTTATGTGGGCAAACTCGATTACAGCGGCGAATCCCTCATGTGAACAGAGCAGAGTCTAATTCGTTTTGCTGCAGGACGTGCATTGACTTCAGCGGTGTTTAAGCAGAATCAAGAGTTTGGGATCTTCGCAATGCGTTTTCTGTAGGAGCGTTCTCTTGGAACGTTGGGTATCCTGGGACGGCATCCGTGGCGTTCGGTGTTGGCGTGGAGCTGAATCGAATGGCTCGACCCGGCTCTGGGGTTCTGGTGTCGCTGGGAGGCGGATACTCGTCTCAGAGCATGGCTAGGGTGGTGGTTTGGGAATGGCTGAACGAACACGGCCGCTGGAGGCCATACGGCGCCGCCGTCTGTCATCACATCGAAAACGTCCTGAAGGGGGACGCTCGGGGGACCGTCATACTGGGGCAGGTGGATGCCCAGCTCGCGCCCTACGTCATAGACCTGCAGTCCATGCATCAGTTCAGGCAAGACACAGgCACAATGCGTCCCGTGCAACGTAATTTCTACGACCCGTCCTCGGCTCCAGGCAAGGGCATCGTGTGGGAATGGGAGAACGACTGCGGCTCCTGGACGCCGTACGACATGGAGCTGTGCGTCAGCATCCAGAACGCCTACGAGAAGCAGCATCCCTGGCTGGACCTGAGCTCTCTGGGCTTCAGCTACGTAGTAGACTTCGACGGGATGTCCCAAACCAACCGGCAGAGTCAGAGGAAGCGGCGCATCCGGCGGCGGATGGACCTGGCCTACCCTCTCATCGCCGGATCCATCCCCAAGTCCCAGTCCTGGCCGGTGGGCACCAGCTCGGGGACGCCCTGCACCTGTCAGCAATGCATTCTGGTCCACAGCACGAGGGCCGCCTCCAACGCCATCCTGGCCCTGCAGCAGAGGAGGAAGCTGTACGGGACGGAGGGCGGAGCCAGCGCCGTCGTCAGGCAGAGCAACACCTTCGCCGGCACCTCCCTCTGGTCGCCCGCGACGACCGTCGCCAGGGGACACCATAACAACATATCGGTGGGAGGCGGAGGAGGAGGCGGGAAGGTGGAGATGAACTTCCCGTGCGCTCCTGCCATCGTGACGCTGCCATCCAATCACGCGCTTACTATTAACGGACAGAACAATCTGAACCGGCCGGGAACGCAGCGGATCACGGTGACGGCCAGCCGAGGATCTGTCCCTCCAGGGgttcctgcacttcctgtgaaGAATCTCACCGGGTCAGGTCCGGTCCATCCCGCGTTAGCAGgaATGACTGGGATCCTCATGTGTGCCGCTGGGCTCCCCGTGTGTTTGACCCGGGCTCCTAAACCCATCCTCCATCCACCGCCGGTCAGCAAGAGCGACCTGAAGCCCGTGCCGGGGATCAACAGCATCCGACGCAAGACCAAGAAAAAGCACCTCCGCaaagGTAAAAACCCCGAGGACGTGGTTCGGCGCTACACGGAGAAGATCAAGTCGGCTCCCGATGAGGACTGCACCATCTGTATGGAGCGACTGGCCACCGCGTCCGGATACGAGGGAGTGCTGAGCTACAGAGGCATCAAGCCCGAGCTGGTCGGCAAACTGGGAAAGTGCGGACACATGTACCATCTTCTGTGTCTGGTGGCCATGTACAACAACGGCAATAAGGACGGCAGTCTGCAGTGTCCCACCTGTAAGGCCATCTACGGGGAGAACGGCACACAGCCTCCTGGGAAGATGGAGTACCACGTGATTCCTCATTCTCTACCTGGATACTCCGACACCAAGACTATACGGATCGTCTATGACATTCCAGCTGGGATACAGACCACAGAGCACCCGAATCCCGGGAAAAAGTACAGCGCGCGCGGATTTCCTCGACACTGCTACTTACCAGACAACGAGAAAGGCCGGAAGGTGTTGAAGTTGCTCATCACGGCGTGGGACCGTCGCCTGATCTTCACCATCGGGACGTCCAGCACCACGGGGGAGACGGACACGGTCGTCTGGAACGAGATCCACCACAAAACAGAGTTCGGCTCCAACCTCACGGGCCACGGCTACCCCGACCCCAACTACCTGGACAACGTGATGAGGGAACTGGCCGCTCAGGGCGTCGGAGAGGACAACCTGAAGGACTGA

Function

symbol description
dtx1 Predicted to enable transferase activity and zinc ion binding activity. Acts upstream of with a negative effect on Notch signaling pathway. Acts upstream of or within glial cell differentiation and neuron differentiation. Predicted to be located in cytoplasm. Is expressed in nervous system and spinal cord neural tube. Orthologous to human DTX1 (deltex E3 ubiquitin ligase 1).

NR:

description
E3 ubiquitin-protein ligase DTX1-like isoform X1

GO: NA

KEGG:

id description
K06058 DTX; deltex

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247249.1 True 2459 mRNA 0.59 11 1494505 1523464

Neighbor

gene id symbol gene type direction distance location
LOC122350264 dgcr6,LOC107572069,LOC107721026,LOC105899531 coding downstream 39975 1447000 ~ 1454530 (-)
pym1 LOC107701384 coding downstream 241989 1250060 ~ 1252516 (-)
LOC122350094 NA coding downstream 246141 1244834 ~ 1248364 (-)
ap3s1 ap3s1,LOC107661175,LOC107566394,LOC107729057 coding downstream 326048 1160400 ~ 1168457 (-)
dmxl1 dmxl1,LOC107571775,LOC107663590,LOC107704574 coding downstream 436578 1016890 ~ 1057927 (-)
LOC122350659 NA coding upstream 104189 1627653 ~ 1646362 (-)
LOC122349997 NA coding upstream 186894 1710358 ~ 1714221 (-)
LOC122350661 NA coding upstream 248518 1771982 ~ 1777474 (-)
si:dkey-178e17.3 LOC107754395,LOC107671045,LOC107657210,LOC107722861 coding upstream 313659 1837123 ~ 1852539 (-)
si:dkey-178e17.1 slc25a1,LOC107754397,LOC107670994,LOC107657208,LOC107722854,LOC108412497 coding upstream 334456 1857920 ~ 1878899 (-)
G60198 NA non-coding downstream 1345 1399728 ~ 1493160 (-)
G60194 NA non-coding downstream 19793 1384419 ~ 1474712 (-)
G60192 NA non-coding downstream 44575 1351967 ~ 1449930 (-)
G60189 NA non-coding downstream 182361 1311885 ~ 1312144 (-)
G60188 NA non-coding downstream 215202 1279000 ~ 1279303 (-)
G60217 NA non-coding upstream 18982 1542446 ~ 1544129 (-)
LOC122350073 NA non-coding upstream 127456 1650920 ~ 1655010 (-)
LOC122350074 NA non-coding upstream 134274 1657738 ~ 1659992 (-)
G60209 NA non-coding upstream 138025 1661489 ~ 1671766 (-)
LOC122350072 NA non-coding upstream 140838 1664302 ~ 1666989 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other downstream 137552 1349171 ~ 1356953 (-)
commd10 commd10,LOC107728250,LOC107663591 other downstream 335219 1140698 ~ 1159286 (-)
G60098 NA other downstream 356353 1135401 ~ 1138152 (-)
csgalnact1b LOC107712620 other downstream 755133 732793 ~ 739372 (-)
LOC122349987 LOC107661519,LOC107712504,LOC107726877,LOC107704593,LOC107573347,LOC794598 other downstream 762661 723145 ~ 731844 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other upstream 38082 1561546 ~ 1606609 (-)
G60220 NA other upstream 53341 1576805 ~ 1580616 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other upstream 209400 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other upstream 225598 1749062 ~ 1762549 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other upstream 535930 2059394 ~ 2061481 (-)

Expression


Co-expression Network