rab3c (rab3c,LOC107599832,LOC107700568,LOC107743864)


Basic Information

Item Value
gene id rab3c
gene name rab3c,LOC107599832,LOC107700568,LOC107743864
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8600995 ~ 8606166 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247251.1
GCGAGTGTCTGCTGACGTCCATTGCGAGCATCACTGCATCCAACATTTATCCCAGCAGCCGACTCCACCTCTTCAAAAcggaaaaaaactataatttattaGGATTAAATAAGAACAAGCTCCGTTTATTGTGTTGggtttatttatagttaatgGAGTTATACGGAAAGATGGCTGCTACGCAAGACAACAAACAAAAGGAGAACTCTGATCAAAACTTTGATTACATGTTCAAGTTGTTGATCATTGGGAACAGCAGCGTTGGAAAAACATCCTTCCTCTTCCGCTACGCTGATGATACGTTCACGTCTGCCTTTGTCAGTACGGTGGGCATCGACTTTAAGGTCAAAACTGTGTATAAGAACGACAAAAGGATCAAGCTTCAGATCTGGGACACAGCTGGGCAGGAAAGGTACAGGACCATCACCACTGCCTACTACAGAGGGGCCATGGGCTTTATCTTAATGTACGACATTACTAACGAGGAGTCTTTCGCTGCTGTACAGGACTGGGCGACCCAGATTAAGACATACTCTTGGGACAATGCCCAGGTAATCCTCGCAGGAAACAAATGTGACATGGAGGAGGAACGGATAGTGTCTGTGGACAGCGGGAGACTGCTAGCAGAACAGCTGgGATTTGAGTTTTTTGAGACGAGCGCAAAGGACAACATCAACGTCAAGCAGACTTTCGAGCGCTTGGTGGACATCATTTGCGACAAGATGTCAGACACACTTGAGGCCGACCCCGCCGTCACCACAGGAACGCCCACTACCAGACTGACGGACGACCCGTCACCCCCGCAGCAGTCTGACTGTAGCTGCTAGTGTTCACCGTCCAGGCCGTTCGCTTCTGTGGCTCGAGCGCTGTTGCCAAGCTTCTGTATTCTGACACAGAATAGGTTACCGAACCTCAAACCTTTGACCTGGCTTTAACTCCTAGTTTTTTGGTGTTAATGACATAGCAAACTAGCAAGATTGTGCCAAACACAAGTGTCAAACCTTGTCTTACCtttatgccattatactagcaAAGAGGTCTTTTTTCAGGGGTTGTTAGTGTACCTGTATTCCCTGCACTGCAATATCTCTCCTGTTAGTCATTTTAGCATAAGCAGAAACGAGTTGAACTTTAGATGCTCCGCAATCATTCCCATGTCTCTCAGGGGAATTATAAACTTTAGCAAATTTATAAATTCTACGTACTTGTCTAACTCATGTGTACCAGATTGAGAGGATGTTGTATTCGCATTTTGCTGGTGAGTCAGCTggagatgtttgtgtgtgacgTGTGTACGGAAAATGACTGCGAAAGCTAAAAaggtatgaaaaaaaataaatgtggccTTGAAGTGG

Function

symbol description
rab3c Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in protein localization to plasma membrane; regulation of exocytosis; and secretion by cell. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be active in endosome; plasma membrane; and synaptic vesicle. Is expressed in several structures, including alar plate midbrain region; immature eye; nervous system; neural crest; and pectoral fin. Orthologous to human RAB3C (RAB3C, member RAS oncogene family).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07883 RAB3C; Ras-related protein Rab-3C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247251.1 True 1355 mRNA 0.45 5 8600995 8606166

Neighbor

gene id symbol gene type direction distance location
ndufaf2 ndufaf2,LOC107752447,LOC107743894,LOC107657848 coding downstream 120264 8478681 ~ 8480731 (-)
depdc1a depdc1a,LOC107657894,LOC107752443,LOC107599802,LOC107548279,LOC107699654,LOC107716419 coding downstream 124448 8469042 ~ 8476547 (-)
LOC122351041 rpe65,rpe65c,LOC107657893,LOC107752442,LOC107700531 coding downstream 133782 8463209 ~ 8467213 (-)
osbpl9 osbpl9,LOC107699596,LOC107657891 coding downstream 143761 8431193 ~ 8457234 (-)
LOC122351130 NA coding downstream 171221 8429694 ~ 8429774 (-)
skia ski,skia,LOC107548407,LOC107699765,LOC107657901,LOC107599811,LOC107710903 coding upstream 140721 8746887 ~ 8808599 (-)
prkcz prkcz,LOC107710919,LOC107743854,LOC107548418 coding upstream 214190 8820356 ~ 8911987 (-)
st6galnac5b st6galnac5b,LOC107599835,LOC107657873,LOC107710911,LOC107743856,LOC107550326,LOC107700626 coding upstream 316527 8922693 ~ 8934751 (-)
LOC122350776 LOC107599836,LOC107657909,LOC107710921,LOC107743853,LOC107548462 coding upstream 366627 8972793 ~ 8975940 (-)
tnni3k tnni3k,LOC107743849,LOC107550356,LOC107699804,LOC107657874,LOC107710912 coding upstream 385177 8991343 ~ 9001962 (-)
G62120 NA non-coding downstream 92872 8507891 ~ 8508123 (-)
G62076 NA non-coding downstream 170860 8427285 ~ 8430135 (-)
LOC122351107 NA non-coding downstream 331778 8253538 ~ 8269217 (-)
G61967 NA non-coding downstream 626975 7879417 ~ 7974020 (-)
LOC122350891 NA non-coding downstream 646353 7951561 ~ 7954642 (-)
LOC122350893 NA non-coding upstream 105871 8712037 ~ 8739953 (-)
G62239 NA non-coding upstream 307316 8913482 ~ 8914004 (-)
G62235 NA non-coding upstream 312592 8918758 ~ 8920904 (-)
G62241 NA non-coding upstream 315315 8921481 ~ 8921696 (-)
LOC122351086 NA non-coding upstream 329912 8936078 ~ 8942255 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other downstream 184442 8392345 ~ 8416553 (-)
LOC122350139 elavl4 other downstream 368221 8117008 ~ 8232774 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other downstream 913433 7677496 ~ 7687562 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other downstream 1498002 7091450 ~ 7102993 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other downstream 1544566 6875349 ~ 7056429 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other upstream 41104 8647270 ~ 8649983 (-)
pola2 pola2,LOC107599808,LOC107657899 other upstream 46138 8652304 ~ 8657286 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 651077 9257243 ~ 9262826 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 1094228 9700394 ~ 9708621 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other upstream 1348515 9954681 ~ 9969485 (-)

Expression


Co-expression Network