cabp4 (LOC107598993,LOC107665077,LOC107755310,LOC107603028,LOC107699144)


Basic Information

Item Value
gene id cabp4
gene name LOC107598993,LOC107665077,LOC107755310,LOC107603028,LOC107699144
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 6704048 ~ 6709965 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247269.1
tcGTTATCAACTAGCATGTCTCAGAGGAGTAAAACGTCTTCAAAAGAAAGCTCCTCTCGTCCTCCATCCACATCAGACAATCATCCTCCACGCTCTGCTCTTCGTAACTCCTCCAAAGACTCCAAGAACTCAGGTCACAGGGGCTCATCTGGCAGCCAAGGACGCCGCGGCAGTAGATCTTTCAGCCAGAACTCTGCTATTGCAGCGGCTTATACACAGTACCTCAATGCTCTCTTTGGACAGGACAGAGATTTACTGCCAGAGGAACTAGATGaactGCACGTAGCATTTAAAGAGTTTGACTATGACCAGGACGGGTATTTGCACTACAAAGACGTCGCAGACTGCATGAGAACCATGGGATACATGCCAACAGAGATGGAACTGATTGAGATCATTCAgcagataaaaatgaaatGGGGAGGCCATGTGGACTTTGATGATTTCTGTGAATTAATGGGGCCCAGGATGCTGGCTGAAACCGCTCATATGGTGGGTCTAAGGGAGCTGCACTGCGCTTTCAAACAGTTTGACTGTGACGGTGATGGACGGATCACCTTTGAGGAGCTGAAGGAGTCCACAAAGACGCTGCTCGGGGAGAAACTGAAGAAGGGAGAACTGGAAGAAATTCTGACAGACATCGACCTCAACGGAGACGGGAACGTGGACTTTGATGAGTTTGTCATGATGCTGTCTCTCCGATAA
>XM_043247270.1
ATGTCTCAGAGGAGTAAAACGTCTTCAAAAGAAAGcAGCTCCTCTCGTCCTCCATCCACATCAGACAATCATCCTCCACGCTCTGCTCTTCGTAACTCCTCCAAAGACTCCAAGAACTCAGGTCACAGGGGCTCATCTGGCAGCCAAGGACGCCGCGGCAGTAGATCTTTCAGCCAGAACTCTGCTATTGCAGCGGCTTATACACAGTACCTCAATGCTCTCTTTGGACAGGACAGAGATTTACTGCCAGAGGAACTAGATGaactGCACGTAGCATTTAAAGAGTTTGACTATGACCAGGACGGGTATTTGCACTACAAAGACGTCGCAGACTGCATGAGAACCATGGGATACATGCCAACAGAGATGGAACTGATTGAGATCATTCAgcagataaaaatgaaatGGGGAGGCCATGTGGACTTTGATGATTTCTGTGAATTAATGGGGCCCAGGATGCTGGCTGAAACCGCTCATATGGTGGGTCTAAGGGAGCTGCACTGCGCTTTCAAACAGTTTGACTGTGACGGTGATGGACGGATCACCTTTGAGGAGCTGAAGGAGTCCACAAAGACGCTGCTCGGGGAGAAACTGAAGAAGGGAGAACTGGAAGAAATTCTGACAGACATCGACCTCAACGGAGACGGGAACGTGGACTTTGATGAGTTTGTCATGATGCTGTCTCTCCGATAA

Function

NR:

description
PREDICTED: calcium-binding protein 4

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23531 CABP1_2_4_5; calcium-binding protein 1/2/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247269.1 True 705 mRNA 0.49 7 6704048 6709965
XM_043247270.1 False 693 mRNA 0.49 7 6704048 6709950

Neighbor

gene id symbol gene type direction distance location
LOC122351102 LOC107755287,LOC107758020,LOC107665055,LOC107549659 coding downstream 13387 6679661 ~ 6690661 (-)
b3gnt3.4 b3gnt3,LOC107665060,LOC107599054,LOC107755313 coding downstream 25895 6670280 ~ 6678153 (-)
ccdc124 ccdc124,LOC107557177 coding downstream 60725 6636743 ~ 6643323 (-)
kcnn1b kcnn1,kcnn1b,LOC107557189,LOC107758025,LOC107598990,LOC107665010 coding downstream 67971 6603068 ~ 6636077 (-)
si:ch73-61d6.3 si:ch73-61d6.3,LOC107725329,LOC107665009,LOC107758028,LOC107699027,LOC107598988 coding downstream 106473 6587209 ~ 6597575 (-)
serping1 LOC107665067 coding upstream 48239 6758204 ~ 6764605 (-)
igf3 LOC107755307,LOC107598996,LOC107665064 coding upstream 57001 6766966 ~ 6770484 (-)
si:dkeyp-110g5.4 LOC107665063,LOC107755306,LOC107599055 coding upstream 61207 6771172 ~ 6774736 (-)
atp2b3a atp2b3a,LOC107755305,LOC107758015,LOC107699155,LOC107603076,LOC107665062 coding upstream 64909 6774874 ~ 6801595 (-)
dedd dedd,LOC107755304,LOC107665071,LOC107603111,LOC107699191,LOC108411641 coding upstream 97876 6807841 ~ 6814340 (-)
G61663 NA non-coding downstream 45764 6657498 ~ 6658284 (-)
G61640 NA non-coding downstream 142130 6561450 ~ 6561918 (-)
G61629 NA non-coding downstream 152337 6551404 ~ 6551711 (-)
G61582 NA non-coding downstream 235632 6467953 ~ 6468416 (-)
LOC122350799 LOC107725298,LOC107598986 non-coding downstream 428838 6273884 ~ 6275210 (-)
G61782 NA non-coding upstream 152063 6862028 ~ 6862954 (-)
G61860 cacna1e,LOC107707593,LOC107657843,LOC107599003 non-coding upstream 564625 7274590 ~ 7281165 (-)
G61865 NA non-coding upstream 596147 7306112 ~ 7308340 (-)
LOC122350886 NA non-coding upstream 667790 7377755 ~ 7378459 (-)
LOC122350888 NA non-coding upstream 680323 7390288 ~ 7394209 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other downstream 261066 6423742 ~ 6442982 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other downstream 742942 5919961 ~ 5961106 (-)
G61513 NA other downstream 1086384 5614329 ~ 5617664 (-)
c8h9orf116 LOC107757294 other downstream 1094476 5605172 ~ 5609572 (-)
pip5k1bb pip5k1bb,LOC107664977,LOC105901155,LOC107566804,LOC108412809,LOC108265367,LOC108234418 other downstream 1193105 5476213 ~ 5510943 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other upstream 104506 6814471 ~ 6816747 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other upstream 165384 6875349 ~ 7056429 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other upstream 381485 7091450 ~ 7102993 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other upstream 967531 7677496 ~ 7687562 (-)
LOC122350139 elavl4 other upstream 1407043 8117008 ~ 8232774 (-)

Expression


Co-expression Network