seta (seta,LOC107699670,LOC107752982,LOC107754404,LOC107560061,LOC107671021)


Basic Information

Item Value
gene id seta
gene name seta,LOC107699670,LOC107752982,LOC107754404,LOC107560061,LOC107671021
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2071889 ~ 2075596 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247301.1
acccatgaccttggcgtTTGTGCCGTACAGCAGTTCGGGGTCATTCACGAATAACCTTTTTACGTAAAAAACGTTCGGatgcatttttaactttttaactcgaacgctgcatttttaaaaagttcttcaTGCATGGGACGCAGGTGCAACGGTTCTCATGCAAAGTTTGTGTCGAAAAACAACGGAACAGTTGCTCAGTGCAATGCAAAATGCGTTCGGCGTGAATGCTTGTTCGGTtttaagggttagttcaccccgaaatgaaaaattctgtcattaattactcgccctcgtGTTGTTTTAAACCCGTAAGAGCCATTCTCAGAAACATAGCAAGGTAAAACAAACATCAGTAGCTCAACTCAAGCTACTAGAACGCTTTTAATGCACAAAGACAACAGTTTCTTGAACAATTTCTTCTCCCCTGCCGTTTTGGAGAATgctttctttgtgcacaaaaagcgTTAGCATAGCTAAAATGAAGTTGTGCCGCTGATGCACATGGACGGTTTCACTGATGGCCTTGCTACGTTTCTGGGACCGGGAACATTTATGGAGGGCCAGAGATctcacagatttcatcaaacgTCTCTTAATTTGTGTCCCAAAGATGAACAAACGTCTTAATGGTTTGAAACGGCACGAGGGCGAGTCATTAATGACAGGATTTTGAACCAATCCACTGATTGAACACACTCCTGTGTGTTTACTTGCGGTGCTGTTTAGTCCAGAACCATTTTATCTACATTCAGGTGACATGTTATGAGAGCTTCGTTAAAATCCCGCCCTTTTTGTAGCGGTTCCAAACCCCGCCCCGCCCTCGCCGGCGCCGGCCAATCAGAGAGCGCGACCGGGGATCGACGGCGCGCGCGGCGGGTTGTTCTGGAAGGGGCGGAGCTCATTTTTCGAGCTCGTGCGGGGCGCGTTCTGTCCGAAAGAGCGCGTGAGAATCTGCGTTCGTTCCCTCGCGGTAAGTTTGTGTGCGGAGCAGCGCTCGTTTCTCTTCTTGTCCTATCGCAAGTCTCCAGAAGCCGAGTTCAAGGAGGACGATCTTCTACCTCAGCGAGTTTAAAAACCACAGCGCTTGATTCTCACTGAAAACTCCTCTCGTCGTGATCAGTGAAATCATGTCTGCCTCAGCGGCTAAAGTCAGTAAAAAGGAACTGAACTCGAACCACGACGGCGGGGACGAGACCTCGGAAAAAGAGCAACAAGAAGCCATCGAGCACATCGATGAAGTACAGAACGAAATCGACAGACTGAACGAGCAGGCGAGTGAGGAAATCCTCAAAGTCGAACAGAAATACAACAAACTCCGCCAGCCGTTCTTCCAGAAGAGGTCGGAACTCATAGCCAAAATCCCCAACTTCTGGGTCACAACATTTGTCAACCACCCGCAAGTCTCGGCTCTTCTCggggaggaggatgaggaggcgCTCCACTACCTGACCAGAGTAGAGGTGACGGAGTTCGAAGACATCAAATCCGGCTACAGAATAGATTTTTATTTCGACGAAAACATGTATTTCGAGAACAAAGTCCTCTCCAAAGAAATTCACCTGAACGAAAGCGGAGACCCGACCTCGAAGTCGACGGAGATCAAGTGGAAGCCGGGAAAAgaCCTCACGAGTCGGTCCGGTCAGACGCAGAGTAAAGCGGGCAAGAAGCGGCAGCACGAAGAGCCCGAGAGCTTCTTCACCTGGTTCACCGATCACGCCGACTCGGGGGCGGACGAGCTGGGCGAAGTCATTAAAGACGACATCTGGCCCAATCCTCTGCAGTACTACTTGGTTCCGGACATGGAGGACGAGGAGGGAGAGGGCGAGGACGAGGAGGAAGACGAGGAAGGTCTGGACGACATCGACGAAGAGGGAGAGGACGACGGAGAGGAAGAGGACGACGACGACGGGGAGgaTGATGACGGCGAGGACGACTGAAGCTGAAATAGAGGAATATTATCCACATTTCCCAAATTGCttctttggctttttttttttgttgtttttttggcgAAGCAAGGCGCttccttttcctcctcttttttttttttttttttttttttttcgtttcttGGTTTTGAGCTCCATCTTTCCTCTATCCTGAACTTGCCGTGTTGAAGTCCCCCGAACAGACTCGAAATAAACTGACTGCAAAATCTCGCCGACATGGCATCCACCATCTCAATTTCCAAATGCATTTCgaggtttaaagaaaaaagaaaagaaaaaaaaagcgaaacaCTGTAGTTACCGGCCGCGCGTCGTCTGGAGTAGACCTGCGAaatagtgttttctgttttgttttttattattataaatatatatgtacaaatatg

Function

symbol description
seta Predicted to enable chromatin binding activity and histone binding activity. Predicted to act upstream of or within nucleosome assembly. Predicted to be active in chromatin and nucleus. Is expressed in central nervous system; optic cup; otic vesicle; and sensory system. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability. Orthologous to several human genes including SET (SET nuclear proto-oncogene).

NR:

description
PREDICTED: protein SET

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11290 SET, TAF1, I2PP2A; template-activating factor I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247301.1 True 2335 mRNA 0.48 8 2071889 2075596

Neighbor

gene id symbol gene type direction distance location
acaa2 acaa2,LOC107671002 coding downstream 16706 2046116 ~ 2055183 (-)
rpl6 LOC107699672,LOC107671003,LOC107559598 coding downstream 27284 2041554 ~ 2044605 (-)
vdac3 vdac3,LOC107754399,LOC107671013,LOC107560056 coding downstream 63789 1996550 ~ 2008100 (-)
plat plat,LOC107754398,LOC107657211,LOC107671043 coding downstream 106836 1947141 ~ 1965053 (-)
si:dkeyp-117b11.1 LOC107670989,LOC107657213,LOC107754414,LOC107722857,LOC107560032,LOC107559594,LOC107559561 coding downstream 135017 1927729 ~ 1936872 (-)
zdhhc12a LOC107699641,LOC107560045 coding upstream 551 2076147 ~ 2081503 (-)
slc25a25a slc25a25a,LOC107671014,LOC107754405,LOC107699669,LOC107560063,LOC108430373,LOC107559565 coding upstream 6445 2082041 ~ 2089293 (-)
LOC122350843 LOC107560046,LOC107699639 coding upstream 59612 2135208 ~ 2138080 (-)
LOC122350819 LOC107552180,LOC107552179,LOC107670991,LOC107752989,LOC107754429,LOC107682543,LOC107682550 coding upstream 328614 2404210 ~ 2419714 (-)
LOC122350817 LOC107552179,LOC107552180,LOC107670991,LOC107754429,LOC107552177,LOC107670988,LOC107682543,LOC107682550 coding upstream 332750 2408346 ~ 2410033 (-)
G60487 dynll1,dyl1,LOC107559583,LOC100698873 non-coding downstream 32064 2037700 ~ 2039825 (-)
G60473 NA non-coding downstream 77144 1991335 ~ 1994745 (-)
G60471 NA non-coding downstream 83336 1987773 ~ 1988553 (-)
G60237 NA non-coding downstream 221956 1849488 ~ 1849933 (-)
G60204 NA non-coding downstream 291536 1726225 ~ 1780353 (-)
G60510 NA non-coding upstream 48462 2124058 ~ 2124341 (-)
G60519 NA non-coding upstream 91336 2166932 ~ 2168247 (-)
G60530 NA non-coding upstream 173746 2249342 ~ 2253090 (-)
G60532 NA non-coding upstream 206942 2282538 ~ 2282891 (-)
G60542 NA non-coding upstream 262963 2338559 ~ 2338844 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other downstream 10408 2059394 ~ 2061481 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other downstream 250239 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other downstream 309340 1749062 ~ 1762549 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other downstream 465280 1561546 ~ 1606609 (-)
G60220 NA other downstream 491273 1576805 ~ 1580616 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other upstream 55773 2131369 ~ 2162003 (-)
G60564 pxnb other upstream 385335 2460931 ~ 2464371 (-)
bicdl1 bicdl1,LOC107553048 other upstream 445618 2521214 ~ 2552187 (-)
rad9b LOC105891618,LOC107713043,LOC107671006,LOC107552191,LOC107714555 other upstream 707024 2782620 ~ 2823826 (-)
G60679 adra1aa,LOC107553034,LOC107699645,LOC107713032,LOC107671010,LOC107552152 other upstream 956871 3032467 ~ 3035092 (-)

Expression


Co-expression Network