nr1h5 (nr1h5,LOC107653410,LOC107598964,LOC107725330,LOC107674374,LOC107734534,LOC107570978)


Basic Information

Item Value
gene id nr1h5
gene name nr1h5,LOC107653410,LOC107598964,LOC107725330,LOC107674374,LOC107734534,LOC107570978
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 5341394 ~ 5351279 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247303.1
GCTCCGAACCATTAAAATATCTGTTCCTCACTTTTCACAGCAACTTTGAAGTTGATCTTAAAAACTGGACAGGACAATGTTAAATTGCCCTCTTTGGTGTATTATCGACTTTCTGTGACCCCGTGTTTAAAGTCACACACGTACTGGTATGTGTTTGAATTAATGGTTTGTGTTGGAGGGAAGCGCTGTTTGTTttgcgcatgtgtgtgttccAGTGTGTGTTTGGCAAGTGTTGGACGTCAGGGGCTGAACTGCTGTCAACATCACAAATGCAAGAGGCACATCAAGCAGAGATCCAGCACACGCAACATCAGCGCTGATTCAGACATTCTCTGTGAAGAGCGAGAATCCAACTGATCAGATGAGAGAGGGGACAGATCCTGAGATGAGCATGTCAGTCAGTGGCTACCTCTCTGCATCAGACACGTATGACATCACAGAGCCACCACAGTACTATGATGTTCTTGTGGATCCACTGAGTTGCCCTTATCAGGAACCAGATCTACAAAGTTCTCTCTATGGCCAGCAGCCGTTCAGCCATGTCAATGTGCAGTTTTCAATGTATGGAGCGCCAAACTCTCAAGTGTGCAACCCGCCGTACCCCTACAGCCATCAGTGCTCTGAGTTCACCTGTGAGCCAGACATGGAGGTCCAAAGCCCAACAAGAGGTAGCATTGTCAGCCTTCCAGTGTTAAAAAGACCCAGGATGGGCCACGGTGCCCGAGTGAAGGGCCAGGATGAGctgtgtgtggtgtgtggaGATAAAGCCTCGGGATATCACTACAATGCCCTCACCTGCGAGGGATGCAAAGGTTTCTTCAGACGCAGTGTGACTAAAAAGGCAGTGTACCGCTGCAAGAGCGGCGGAAGCTGCGAGATGGACATGTACATGCGGAGAAAGTGCCAAGACTGCAGGCTGCGCAAATGCAGAGCCGTCGGGATGCTGGCAGAGTGTCTGCTTACAGAGGTGCAGTGCCAGTCGAAACGACTGAGGAAGGGCTCCAAGCACAGAGGACACAATGGGTCAACAGGAAGAGGTGAAGAAGACTACTCTGAAAGCAGAAATGTCTCATCCACCAGCAGATTCCCCTCTCGGGTATCTGGTTTCTCCCGAGAGCAGAGATGCGTTCTGAATAGAATTGTTGAGGCTTATCGTAGGTACATAATTCAAGACAACACGCACTGTCGgGTGCCTCTGTGGTCAAGTTTGACAAACAGTGTAGACCTGACTCCTCCACAGACAGAGAAGCTTTTGCAATTTTTGAGGAGCGTACCTGGGTTTGAGCTTTTGGATGGTTCTGACCAGAACACACTTCTGTCCAGCTCTTCAGTTGAAGTCATGTTTCTACTCTTGGCTCAGCAGTTCTCAGAGAACCCCACTAGTGTCAGCAATgCTTTATACCCAGCGAATTCAAACAACTCAAACCCTGACTGGGTGAAAACTTTAGAGTCCAAGACTGGGAACAGCCACAGAACACTGACACACTCAGGGTTGAATGATGAGTTCTTGAGGTCTGTGGTAAATTTCCTCCACAGCATGGTGACTATTGCGGTGACTGAGGCTGAATATGCACTTCTAACAGCGACTGCAGTGTTATGCTCAGACAGGCCGTCTCTGCGTGCGGTGGGCTGTGTTGAGAACTTACAGGAGTTTGTTTTGGAGCTTCTGTCCCGAGCTTGCTGCTGCTGTAGTCAGGGGACGGCACAGGACCCACGACGCTTCGCCAGGCTCCTGGGACGGCTGACGGAGCTGAGAACGCTACGACACAACCACCTCACCCTTCTCCCACAGCAGCCCTGGGACATGCAGCCTTGAGACAGCCTTTAGGGAGAGAGATTTGTGACATCTGATTTGCAatacacttttcatttttgcacaGAACAATATCCCAGGTCAGTGTACTTTTGGTTACCCGTGTGcaaacatagtaaaaaaaaaaaaaaaaaacctaaacaaatgTAAGCCTCATGATGTGACATTTTCttatatgcattaaataaaactgttaatgttta
>XM_043247304.1
TTCAACAGCTCCGAACCATTAAAATATCTGTTCCTCACTTTTCACAGCAACTTTGAAGTTGATCTTAAAAACTGGACAGGACAATGTTAAATTGCCCTCTTTGGTGTATTATCGACTTTCTGTGACCCCGTGTTTAAAGTCACACACGTACTGGTATGTGTTTGAATTAATGGTTTGTGTTGGAGGGAAGCGCTGTTTGTTttgcgcatgtgtgtgttccAGTGTGTGTTTGGCAAGTGTTGGACGTCAGGGGCTGAACTGCTGTCAACATCACAAATGCAAGAGGCACATCAAGCAGAGATCCAGCACACGCAACATCAGCGCTGATTCAGACATTCTCTGTGAAGAGCGAGAATCCAACTGATCAGATGAGAGAGGGGACAGATCCTGAGATGAGCATGTCAGTCAGTGGCTACCTCTCTGCATCAGACACGTATGACATCACAGAGCCACCACAGTACTATGATGTTCTTGTGGATCCACTGAGTTGCCCTTATCAGGAACCAGATCTACAAAGTTCTCTCTATGGCCAGCAGCCGTTCAGCCATGTCAATGTGCAGTTTTCAATGTATGGAGCGCCAAACTCTCAAGTGTGCAACCCGCCGTACCCCTACAGCCATCAGTGCTCTGAGTTCACCTGTGAGCCAGACATGGAGGTCCAAAGCCCAACAAGAGGTAGCATTGTCAGCCTTCCAGTGTTAAAAAGACCCAGGATGGGCCACGGTGCCCGAGTGAAGGGCCAGGATGAGctgtgtgtggtgtgtggaGATAAAGCCTCGGGATATCACTACAATGCCCTCACCTGCGAGGGATGCAAAGGTTTCTTCAGACGCAGTGTGACTAAAAAGGCAGTGTACCGCTGCAAGAGCGGCGGAAGCTGCGAGATGGACATGTACATGCGGAGAAAGTGCCAAGACTGCAGGCTGCGCAAATGCAGAGCCGTCGGGATGCTGGCAGAGTGTCTGCTTACAGAGGTGCAGTGCCAGTCGAAACGACTGAGGAAGGGCTCCAAGCACAGAGGACACAATGGGTCAACAGGAAGAGGTGAAGAAGACTACTCTGAAAGCAGAAATGTCTCATCCACCAGCAGATTCCCCTCTCGGAGATGCGTTCTGAATAGAATTGTTGAGGCTTATCGTAGGTACATAATTCAAGACAACACGCACTGTCGgGTGCCTCTGTGGTCAAGTTTGACAAACAGTGTAGACCTGACTCCTCCACAGACAGAGAAGCTTTTGCAATTTTTGAGGAGCGTACCTGGGTTTGAGCTTTTGGATGGTTCTGACCAGAACACACTTCTGTCCAGCTCTTCAGTTGAAGTCATGTTTCTACTCTTGGCTCAGCAGTTCTCAGAGAACCCCACTAGTGTCAGCAATgCTTTATACCCAGCGAATTCAAACAACTCAAACCCTGACTGGGTGAAAACTTTAGAGTCCAAGACTGGGAACAGCCACAGAACACTGACACACTCAGGGTTGAATGATGAGTTCTTGAGGTCTGTGGTAAATTTCCTCCACAGCATGGTGACTATTGCGGTGACTGAGGCTGAATATGCACTTCTAACAGCGACTGCAGTGTTATGCTCAGACAGGCCGTCTCTGCGTGCGGTGGGCTGTGTTGAGAACTTACAGGAGTTTGTTTTGGAGCTTCTGTCCCGAGCTTGCTGCTGCTGTAGTCAGGGGACGGCACAGGACCCACGACGCTTCGCCAGGCTCCTGGGACGGCTGACGGAGCTGAGAACGCTACGACACAACCACCTCACCCTTCTCCCACAGCAGCCCTGGGACATGCAGCCTTGAGACAGCCTTTAGGGAGAGAGATTTGTGACATCTGATTTGCAatacacttttcatttttgcacaGAACAATATCCCAGGTCAGTGTACTTTTGGTTACCCGTGTGcaaacatagtaaaaaaaaaaaaaaaaaacctaaacaaatgTAAGCCTCATGATGTGACATTTTCttatatgcattaaataaaactgttaatgttta
>XR_006251611.1
AACAGCTCCGAACCATTAAAATATCTGTTCCTCACTTTTCACAGCAACTTTGAAGTTGATCTTAAAAACTGGACAGGACAATGTTAAATTGCCCTCTTTGGTGTATTATCGACTTTCTGTGACCCCGTGTTTAAAGTCACACACGTACTGGTATGTGTTTGAATTAATGGTTTGTGTTGGAGGGAAGCGCTGTTTGTTttgcgcatgtgtgtgttccAGTGTGTGTTTGGCAAGTGTTGGACGTCAGGGGCTGAACTGCTGTCAACATCACAAATGCAAGAGGCACATCAAGCAGAGATCCAGCACACGCAACATCAGCGCTGATTCAGACATTCTCTGTGAAGAGCGAGAATCCAACTGATCAGATGAGAGAGGGGACAGATCCTGAGATGAGCATGTCAGTCAGTGGCTACCTCTCTGCATCAGACACGTATGACATCACAGAGCCACCACAGTACTATGATGTTCTTGTGGATCCACTGAGTTGCCCTTATCAGGAACCAGATCTACAAAGTTCTCTCTATGGCCAGCAGCCGTTCAGCCATGTCAATGTGCAGTTTTCAATGTATGGAGCGCCAAACTCTCAAGTGTGCAACCCGCCGTACCCCTACAGCCATCAGTGCTCTGAGTTCACCTGTGAGCCAGACATGGAGGTCCAAAGCCCAACAAGAGGTAGCATTGTCAGCCTTCCAGTGTTAAAAAGACCCAGGATGGGCCACGGTGCCCGAGTGAAGGGCCAGGATGAGctgtgtgtggtgtgtggaGATAAAGCCTCGGGATATCACTACAATGCCCTCACCTGCGAGGGATGCAAAGGTTTCTTCAGACGCAGTGTGACTAAAAAGGCAGTGTACCGCTGCAAGAGCGGCGGAAGCTGCGAGATGGACATGTACATGCGGAGAAAGTGCCAAGACTGCAGGCTGCGCAAATGCAGAGCCGTCGGGATGCTGGCAGAGTGTCTGCTTACAGAGGTGCAGTGCCAGTCGAAACGACTGAGGAAGGGCTCCAAGCACAGAGGACACAATGGGTCAACAGGAAGAGGTGAAGAAGACTACTCTGAAAGCAGAAATGTCTCATCCACCAGCAGATTCCCCTCTCGGGTATCTGGTTTCTCCCGAGAGCAGAGATGCGTTCTGAATAGAATTGTTGAGGCTTATCGTAGGTACATAATTCAAGACAACACGCACTGTCGgGTGCCTCTGTGGTCAAGTTTGACAAACAGTGTAGACCTGACTCCTCCACAGACAGAGAAGCTTTTGCAATTTTTGAGGAGCGTACCTGGGTTTGAGCTTTTGGATGGTTCTGACCAGAACACACTTCTGTCCAGCTCTTCAGTTGAAGTCATGTTTCTACTCTTGGCTCAGCAGTTCTCAGAGAACCCCACTAGTGTCAGCAATgCTTTATACCCAGCGAATTCAAACAACTCAAACCCTGACTGGGTGAAAACTTTAGAGTCCAAGACTGGGAACAGCCACAGAACACTGACACACTCAGCATGGTGACTATTGCGGTGACTGAGGCTGAATATGCACTTCTAACAGCGACTGCAGTGTTATGCTCAGACAGGCCGTCTCTGCGTGCGGTGGGCTGTGTTGAGAACTTACAGGAGTTTGTTTTGGAGCTTCTGTCCCGAGC

Function

symbol description
nr1h5 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation; negative regulation of transcription by RNA polymerase II; and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in liver and yolk syncytial layer.

NR:

description
PREDICTED: bile acid receptor isoform X4

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247303.1 True 2016 mRNA 0.49 11 5341394 5351272
XM_043247304.1 False 1999 mRNA 0.48 11 5341394 5351279
XR_006251611.1 False 1635 transcript 0.49 11 5341733 5351276

Neighbor

gene id symbol gene type direction distance location
si:dkey-8e10.3 si:dkey-8e10.3,LOC107743123,LOC107601742,LOC107674312,LOC107734510,LOC107653415,LOC107584926 coding downstream 481093 4853786 ~ 4860301 (-)
ptpn18 LOC107743092,LOC107653414,LOC107601761,LOC107734536,LOC107674370,LOC107584895 coding downstream 651914 4674326 ~ 4689480 (-)
plxna3 plxna3,LOC107734520,LOC107653403,LOC107743094,LOC107674285,LOC106572068 coding downstream 685925 4510069 ~ 4655469 (-)
slc6a8 slc6a8,LOC107734513,LOC103036862,LOC107653404,LOC108441094 coding downstream 875337 4432982 ~ 4466057 (-)
zgc:86609 zgc:86609,LOC107653429,LOC107743102,LOC107601757,LOC107734524,LOC107674347,LOC108265646 coding downstream 1025658 4311724 ~ 4315736 (-)
slc66a1 pqlc2,LOC107734535,LOC107674372,LOC107725314,LOC107664981 coding upstream 2340 5353619 ~ 5361985 (-)
trim33 trim33,LOC107725313,LOC107734526,LOC107664979,LOC107570974 coding upstream 11447 5362726 ~ 5384419 (-)
bcas2 bcas2,LOC107664982,LOC107725297,LOC107734517,LOC107674303 coding upstream 34428 5385707 ~ 5390120 (-)
dennd2c dennd2c,LOC107665005,LOC107598967,LOC107734514,LOC107674357,LOC107725285,LOC107566809 coding upstream 39546 5390825 ~ 5410171 (-)
ampd1 ampd1,LOC107664993 coding upstream 59672 5410951 ~ 5423401 (-)
G61459 NA non-coding downstream 75356 5143199 ~ 5266038 (-)
G61216 NA non-coding downstream 335828 4961583 ~ 5005566 (-)
G61215 pim1,LOC107584899,LOC107598956,LOC107734527,LOC107674355,LOC107653400,LOC107725309,LOC107391354 non-coding downstream 338511 5001567 ~ 5002883 (-)
LOC122349981 NA non-coding downstream 386238 4949633 ~ 4955156 (-)
G61212 NA non-coding downstream 387948 4953055 ~ 4953446 (-)
G61502 NA non-coding upstream 219125 5570404 ~ 5573893 (-)
G61507 NA non-coding upstream 231636 5582915 ~ 5584720 (-)
G61525 atp2a2,atp2a2a,LOC107674294,LOC107757297,LOC107557188 non-coding upstream 322362 5673641 ~ 5675178 (-)
G61526 atp2a2,LOC105014188,LOC108444117,LOC107397196,LOC107725304,LOC106585469,LOC106514585 non-coding upstream 324711 5675990 ~ 5676748 (-)
G61519 NA non-coding upstream 333881 5685160 ~ 5687209 (-)
LOC122349940 fnbp1,fnbp1a,LOC107720911,LOC107675683,LOC107661630,LOC107757295,LOC107674371 other downstream 133872 5195752 ~ 5207522 (-)
LOC122350811 NA other downstream 153473 5187254 ~ 5187921 (-)
G61071 LOC107601747,LOC107653424,LOC107734537,LOC107674377,LOC107578221 other downstream 944320 4393213 ~ 4397074 (-)
G61023 NA other downstream 1033895 4300992 ~ 4307499 (-)
G60967 LOC107674359,LOC107701814,LOC107727428,LOC107743108,LOC107552221 other downstream 1249237 4088724 ~ 4092157 (-)
pip5k1bb pip5k1bb,LOC107664977,LOC105901155,LOC107566804,LOC108412809,LOC108265367,LOC108234418 other upstream 124934 5476213 ~ 5510943 (-)
c8h9orf116 LOC107757294 other upstream 253893 5605172 ~ 5609572 (-)
G61513 NA other upstream 263050 5614329 ~ 5617664 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other upstream 568682 5919961 ~ 5961106 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other upstream 1072463 6423742 ~ 6442982 (-)

Expression


Co-expression Network