rab35b (rab35b,rab35,LOC107699662,LOC107671023,LOC108430363)


Basic Information

Item Value
gene id rab35b
gene name rab35b,rab35,LOC107699662,LOC107671023,LOC108430363
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2510789 ~ 2518882 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247312.1
GCGCTGTGCGGCAGGAGGAAGCGCCGTTTCCGGTAACGAGCGACTGACTGCTGACACCGCCAAACCCCGACGACGAACCCGCGGCTTTCGGCATCCACCGCGGGGAAAGTGTCCGCTCTTATCCGAGCGGGACGTCAGACGGGTTCCGGCCAAGCGTTCGGCCGGAGAGAGGCGCGAAGCTGCAGCGAGGGCGCGGGGTTTGAGCCTCCCACCGCCGGCATGGCCCGCGACTACGATCACCTCTTCAAACTGCTGATCATCGGTGACAGCGGTGTTGGAAAGAGCAGTCTTCTCCTGCGCTTCGCAGACAACACTTTTTCAGGTAGTTACATCACCACTATAGGAGTCGACTTCAAGATCCGGACGGTGGAGATCAATGGAGAGAAGGTGAAACTGCAGATATGGGATACAGCCGGACAAGAGCGCTTCCGGACCATCACGTCTACGTATTACAGAGGAACCCACGGGGTCATCGTAGTGTATGACGTCACCAGCGCCGAGTCCTTCGTCAACGTCAAGCGATGGCTGCACGAAATAAACCAGAATTGCGACGACGTCTGTCGAATATTAGtgGGCAATAAAAACGATGATCCGAACTCTAAGGTTGTGGAGACAAATGATGCACAGAAGTTTGCTGAGCAGATGGGCATCAGTCTGTTTGAGACGAGCGCTAAAGAGAACGTCAACGTGGAGGAGATGTTTAACTGCATCACGGAGCTGGTGCTCCGGGCGAAGAAAGAGTCCGTGGccaagcagcagcagcagcagcagaacgATGTGATTAAACTCAGCAAGAACAGCAAACGAAAGAAGAAATGCTGCTAGTGGACGAGCGGACGTTCCTCAGTTaagatttcacaaaaaaaaaaacacagtgcgGACTGATGCAGTCCTTTCCGGACCGAGACAAACcacaaagactttttaaaagaaaatgtacagaTTTTATGAGAGTCGAGGAGTTTTACGTGGAATTcgtgatatttaataaaagatcCTCCTTCCTTGTAGAAGGACCAGCAAGCTGACGTGATCGCCAAACCTGTATGCTTTCACAATAACTCTTCAGTGATTATATATATCTCTATTATACACCATCTCAggagtgatttttattttgattctcTTTctcgctttttattttttggcgcAAGAACGATTTGGGCCCCCtccccttttttaattttttttttttttttttttaagaaatcataCAAATACAGACATTTACTCGCCATGTACTCCGTCGGAGACCAATGCCAACAACTTTAGGTCACTTTTAGACGTTATTGATTAGTGATCCATGGTGTGTGTTCATTCTCTGAACGGATCTTTTCTTCTTCAGGCCTGTTTCAGTGAGTGAATCTCATAAAAAGGTTGCATcttaaagtgtatttatatttggaattaaaaaaatgaagactTTGCTTAGGATCAATGATATTTCATGCCAAATTCTTGATTTtcattatcatatatatatatatatatatatatatatatatattattattattattattattattatttatttttttttttttttttttttttttttgtgtgctgcATTGAATTGATGCTTAAagaaatcatacatttttaaaatgaattaaaatgactgttatAGCAATAAAAATCCGAAATTTAAACATCTGGATGCTTCATGAAAATGtggtcaatataaaaaaaatgcaatggtCCTAACATAGGCTTCATTTTTCGTTCAAATGAAcgttttttgcctttttagatgaacatgtttttgtgagattcacctcAATAGTTCAGGCTTGGGTCGTTCGTGATGTGGGCGGAGTTCCTTTGACGTTCAACGACGTCTTCTGCCGCTTCAGGCCCGCGTTCTTCTGCTCTCGTTTTTCCCGTGAAGATGAAGGTGGATGAAGCTGCCATAATCTCAGAACGGTGTTGCCACACGTTTGGTTGTAGTATTCGTCCGGACGCTGGGGTCGCGTCTTTGGCTTCGTGGAATGCGTTCGATCGAAGCCGGTGATGAAACCGATTTCATCTTCTGCATCTCCTCGAAGAGCAACGTTGTTGTGCCACACGAGGTTGTATGAAGTACAACGCAAGACGCTGATACAACGTTTAAAAACCTAACAATTACCGTGTTTATACAGAGTCTATCGCtaatatgaaatgtaatgtttttatatgtgaCATCCCTAAGTTTCTTGCTGTTGACACTTTGACTGAATAGTCTTTATGACAGATGCACATCCCTCAGAGTTATCTTCTAGTGGCATCTCTGTGGAGGTGAATCTCACCAAAACATGACTGTgttcaccttaaaaaaaaaaagattttttttcataaagaaaatgaagctgATTATTAGGAACACTAATGCTGTCTTTtgcattataatgtaaaaaaaaatatatatatattttttttttttttgcaaagaatttcattaaatgcataaattccCCAGTGAAAGCGAAGCCAGTTTTTAGGTGCATTATTTtcgttataaaaaaaaataaaaattctttctGAAAATTATAAAGACAATTTGTTTTGGTTCATGCAATAAATTTAGATCTGGGTTTAAATCatcattacaacaaaaaaaggcatattcatgtttttgttttgcatgaagatgtaaaatgtacagtttttgcGTACAGcacctttttttaatgtctgttttgaagtaatttttaaatataaaaacattgaaaaagaTTAAGGAACCTAAAAtgagcttaatttttttttttttttacatttttttaacatctgaaatgtcattttgtttttgagcagttttgtgagattcaccaACAGAAATGCtttcatgaatattcatgattCATTTAGTAAGCCAAACGCTTTCGACCCAGTCACGTGACTTCAGTTCATCGCGAAGCGTGCCGGTCGAAGCGCTTTTTTCAGCTGTGGTTATATTATACACTGGAGAAAAGAAATGTATAGTGGACCTCCCCTTTATGAactaaatcattaataaatattttaagaattaataTTTGACACAA

Function

symbol description
rab35b Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in endocytic recycling. Predicted to be active in endosome membrane and plasma membrane. Is expressed in Kupffer's vesicle and testis. Orthologous to human RAB35 (RAB35, member RAS oncogene family).
rab35 Enables GTPase activity; guanyl ribonucleotide binding activity; and phosphatidylinositol-4,5-bisphosphate binding activity. Involved in several processes, including endosomal transport; plasma membrane to endosome transport; and protein localization to endosome. Located in several cellular components, including clathrin-coated endocytic vesicle; clathrin-coated pit; and intercellular bridge.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07876 RAB35, RAB1C; Ras-related protein Rab-35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247312.1 True 3026 mRNA 0.39 6 2510789 2518882

Neighbor

gene id symbol gene type direction distance location
gcn1 gcn1,LOC107552181 coding upstream 2675 2465043 ~ 2508114 (+)
pxnb pxnb,LOC107670974,LOC107699663,LOC107752988,LOC107553049,LOC107754409,LOC107552183,LOC102784766 coding upstream 46407 2431894 ~ 2464382 (+)
ctu1 ctu1,LOC107752993,LOC107699664,LOC107552165,LOC107754430,LOC107670973 coding upstream 79159 2428188 ~ 2431630 (+)
LOC122349879 LOC107670988,LOC107552177,LOC107552180,LOC107552179,LOC107670991,LOC107754429,LOC107752990,LOC107553051 coding upstream 82186 2425319 ~ 2428603 (+)
lhx2b lhx2b,lhx2 coding upstream 179018 2323599 ~ 2331771 (+)
LOC122350791 LOC107715152,LOC100333880,LOC107699660 coding downstream 41471 2560353 ~ 2609576 (+)
myl2b myl2b,myl2,LOC107699636,LOC101071916,LOC103044021 coding downstream 276226 2795108 ~ 2802294 (+)
pptc7a pptc7a,LOC107552188,LOC107553043,LOC107671007,LOC107699657,LOC105891618,LOC108430358,LOC103044306 coding downstream 285403 2804285 ~ 2813140 (+)
srrd srrd,LOC107699635,LOC107714588 coding downstream 305390 2824272 ~ 2826296 (+)
cldn5a cldn5a,LOC107713023,LOC107552167,LOC107714561,LOC107553040,LOC107699651,LOC107670982 coding downstream 393810 2912692 ~ 2913737 (+)
G60342 LOC107552179,LOC107552180,LOC107670991,LOC107754429,LOC107552177,LOC107670988,LOC107682543 non-coding upstream 88572 2408095 ~ 2422217 (+)
G60335 NA non-coding upstream 166620 2343936 ~ 2344169 (+)
G60328 NA non-coding upstream 306479 2192957 ~ 2204310 (+)
G60323 NA non-coding upstream 345547 2163307 ~ 2165242 (+)
G60297 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048 non-coding upstream 348745 2159314 ~ 2162044 (+)
G60347 NA non-coding downstream 1948 2520830 ~ 2524134 (+)
LOC122351006 NA non-coding downstream 38148 2557030 ~ 2559048 (+)
G60361 NA non-coding downstream 91435 2610317 ~ 2612227 (+)
G60369 NA non-coding downstream 113835 2632717 ~ 2634015 (+)
G60452 NA non-coding downstream 434134 2953016 ~ 2953994 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 470953 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 474809 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 490755 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 592418 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 1291985 1210815 ~ 1218804 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 1329732 3848614 ~ 3850557 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 1405979 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 1510421 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 2585688 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 2708070 5226952 ~ 5229608 (+)

Expression


Co-expression Network