tuba5 (tuba8l,LOC108265838,LOC108425079,LOC107679810,LOC107711852,LOC107594520,LOC103031418)


Basic Information

Item Value
gene id tuba5
gene name tuba8l,LOC108265838,LOC108425079,LOC107679810,LOC107711852,LOC107594520,LOC103031418
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 13593701 ~ 13597847 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247324.1
GAAGCGCGCGCCCCCGGCTCCTCATTGCTGTGTTGGCGGAGACACGTTACGCGTCTACACTCAACGGAGCTTAAAACGACTTTTGGTGATTTTTGCACCGAAATACTTTAACGTTTTCTCGAAAACTTGATCCCGCGAAACCTAAGTAAAAATGCGTGAATGCATCTCCATCCATGTGGGCCAGGCCGGCGTACAGATtggcaatgcatgctgggagttGTATTGCCTGGAGCATGGCATCCAGCCTGACGGCAATATGCCAAGTGACAAAACCATTGGTGGAGGAGACGACTCCTTTAACACTTTCTTCAGTGAGACTGGCTCTGGGAAGCATGTGCCACGAGCTGTGTTTGTGGATCTGGAACCTGCAGTCATTGatGAGGTGAGGAGTGGAACCTACAGACAGCTGTTTCACCCGGAGCAGCTCATTTCCGGGAAAGAAGATGCTGCCAACAATTATGCCCGTGGCCATTACACCGTTGGCAAGGAGATTATCGATATGGTGCTGGAGCGCGTCCGCAAACTGactGACCAGTGCACTGGACTCCAGGGTTTCCTGATTTTCCACAGTTTTGGTGGAGGCACTGGCTCTGGTTTCACATCCCTTCTGATGGAGCGTCTCTCAGTTGACTACGGCAAGAAGTCCAAGCTCGAATTTGCCATCTATCCTGCTCCTCAGGTCTCTACCGCTGTGGTCGAGCCATACAACTCCATCCTAACCACCCACACCACCCTAGAGCACTCTGACTGCGCCTTCATGGTAGATAACGAGGCCATCTATGACATCTGCCGCAGAAATCTCGACATCGAGCGTCCCACCTACACCAACCTCAACCGCCTGATTGGCCAGATTGTGTCCTCCATCACCGCTTCATTGCGCTTTGATGGTGCCCTCAACGTCGATCTGACAGAGTTCCAGACCAACCTGGTGCCATATCCCAGAATCCACTTCCCCCTGGTCACATACTCCCCCATCATCTCTGCTGAAAAGGCTTACCATGAGCAGCTGTCTGTGTCTGAGATCACCAGTGCCTGCTTTGAGCCATCCAATCAGATGGTGAAGTGTGACCCCCGGCATGGAAAGTACATGGCCTGCTGTATGCTGTATCGGGGTGATGTCGTACCCAAAGATGTGAATGCCGCTATTGCCAACATTAAGACCAAACGCTCAATCCAGTTTGTGGACTGGTGCCCAACTGGGTTCAAGGTTGGCATCAATTACCAGCCACCTACAGTGGTCCCTGGTGGAGACTTGGCCAAGGTACAGAGAGCTGTGTGCATGCTGAGCAACACCACTGCTATTGCAGAGGCCTGGGCCCGTCTGGACCACAAGTTCGATCTGATGTATGCCAAGCGTGCCTTTGTTCACTGGTATGTTGGAGAAGGAATGGAAGAGGGAGAGTTTTCTGAGGCCAGAGAGGATCTTGCAGCACTGGAGAAAGATTATGAGGAAGTTGGCGCTGAGTCTgtggaggatgaagaggagggAGAGGAGTATTAAAAGCCTTAAGCAACTGGTCTGACACCAGTTTACGGTCAGAAGAGAAACTGGTCCTACTTCAGCAGCACTTATAGCAGTATTTGCCTCTTCATTGCCAAGCTGCCTTTATGAATGCCTAATTATGGGGAACAAAGCCcttgtgtgtttataaatgttcTGTTTCGTTCTTTTTCTATACCTCCATTCTGTCTGATTTCAAAGAAATGAGTTGCCAAAGGCATTTCTCTCTGTGAACACTTTTTGTAAGCTGTCTTTGTCTCTCACATGCTGTAAGTGACACGGTTTCAGAAATAAACTtgtcaaatgtg

Function

NR:

description
PREDICTED: tubulin alpha chain-like

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247324.1 True 1809 mRNA 0.50 5 13593701 13597847

Neighbor

gene id symbol gene type direction distance location
kdm5bb LOC107751449,LOC107556320,LOC107711851 coding downstream 2525 13571079 ~ 13591176 (-)
LOC122350644 LOC107556303,LOC107669603,LOC107751461,LOC107679797,LOC107711850,LOC107594521 coding downstream 22869 13562956 ~ 13570832 (-)
LOC122350012 NA coding downstream 31720 13558881 ~ 13561981 (-)
LOC122350013 NA coding downstream 35238 13552468 ~ 13558463 (-)
rap1aa rap1aa,rap1a,LOC107594522,LOC107679791,LOC107556321,LOC107751450,LOC101074250 coding downstream 42302 13545306 ~ 13551399 (-)
LOC122351021 klhl12,LOC107679803,LOC107556315,LOC107711853,LOC107751446,LOC107594517 coding upstream 1403 13599250 ~ 13608277 (-)
adipor1b adipor1b,LOC107751445,LOC107679819,LOC107594512,LOC107711855 coding upstream 11007 13608854 ~ 13615338 (-)
cebpb cebpb,LOC107556312,LOC107669676,LOC107751442,LOC107594515,LOC107679873,LOC107711812 coding upstream 42098 13639945 ~ 13641482 (-)
LOC122350319 LOC107574771,LOC107751454,LOC107669655 coding upstream 575207 14173054 ~ 14175823 (-)
LOC122350320 prf1.5,LOC107751453,LOC107574770,LOC107594505,LOC107711865,LOC107679935 coding upstream 583685 14181532 ~ 14186141 (-)
G63751 NA non-coding downstream 243430 13347624 ~ 13350271 (-)
G63745 NA non-coding downstream 261314 13332164 ~ 13332387 (-)
G63735 NA non-coding downstream 318833 13261692 ~ 13274868 (-)
G63711 NA non-coding downstream 462484 13128190 ~ 13131217 (-)
G63631 LOC107591782,LOC107669630,LOC107711933,LOC107679511 non-coding downstream 792958 12797379 ~ 12800743 (-)
LOC122350567 NA non-coding upstream 22145 13619992 ~ 13682456 (-)
G63866 NA non-coding upstream 90331 13688178 ~ 13693222 (-)
G63867 NA non-coding upstream 101810 13699657 ~ 13700068 (-)
G63868 NA non-coding upstream 113308 13711155 ~ 13712401 (-)
G63873 NA non-coding upstream 125884 13723731 ~ 13724000 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other downstream 347571 13185867 ~ 13246130 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other downstream 510329 12985654 ~ 13083372 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other downstream 1089548 12489197 ~ 12504153 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other downstream 1230597 12342160 ~ 12363104 (-)
G63385 NA other downstream 1329168 12263694 ~ 12264533 (-)
mc3r mc3r,LOC107751459,LOC107669608,LOC107711834,LOC107680356 other upstream 118781 13716628 ~ 13720514 (-)
G63933 LOC107556304,LOC107751435,LOC107594508 other upstream 211581 13809428 ~ 13863250 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other upstream 787753 14385600 ~ 14455243 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other upstream 1125865 14723712 ~ 14731391 (-)
G64228 NA other upstream 1181684 14779531 ~ 14781710 (-)

Expression


Co-expression Network