LOC122350659


Basic Information

Item Value
gene id LOC122350659
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1627653 ~ 1646362 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247340.1
TTGTGAAagattatgcatgcatttaatacgGTAAGGGAAAATCCCCTTTAAATAGGTCAAATGACTTGGACTGCGTTTACTCCAACTCTTAACGAACAGATCCGATTTTGACATTATCTAGTGTTTCTTTGGCCTGCTTGTTTACATTAACTTTAGACGTGACTGGTATCAGATATCTATGTTTGCATTAATTCAGTGATAACTTTATTATGCACATGATAGACCCTCGGATGTTAAACGGCTgtgctattaaaataatttatataactcGCGTTGAGTGGCTGTTACTATTTCCCATTTTTGACAACAGCTGTTATGGATGTTTTGCAGCACAAAATCTGACTGAAAGCATGGTTTTGTTTATCTACAGCTCGCGGTATGCACTAGTGAGTAGCCTATAGTGAAACTTGTTGGttcaattacaaaaatgacaacattatCACCTCGTGAAGGTGGCAAGGCTACGTTGAAAACCAGCTCCTGAATGTTGCATTCTTTATGGGCAAAAGTGCGACTTCTTTTTTGACACTTCACATTTTCTTGTGAACACAGAGGACGTGTGTTAAGCCTTAAGACTCAAGTCTCATGTCAGCATGAAtcagctttatatttttttattggtccTTTGGTCTGCTGTCAGTTCGTCTGATGCGTGGGAAgaatatgaaaatacaaaagATATCCCAGAGCCCATCATCACAGTGTACAGACAGCAGGAGGACGGGGAGgttgtgtttgtgctgtgcaaGTTCACCTCAGTGCCTGGAAGGAGATACAGAAGACAGTCTTTTAAGCTGTCTGTGGAGAGTGAACTAAACTACACCATGGAAACATTCAGCAACCCTTCTTTAGATTCTTCAGAGATGCGTGCGTATATGGTCACCGTGAGTCCACCTGCTTCCTTCACCTGTGTGCATGAGGTCGATTTTTATGTAGATGTCAGGAACGTGAGCAGCCAGGCCTACAATTACAGTGTTTCAGGAGTATCTTCGTTATACGCCTGCTTTTCCTCCTTCATTGCTGTTGCTCTCTTCATCATGACTGCAGCAGTGATTGTGACCAACATCAGGAGCAAAACTAAAGACACCGACTCCACAGCAGTTACCGACAATGACCACGTAGAAGCTGGTGATGGTGGTGGtaatgatgatggtggtggtgatgattATGGTTGCGGTGATGATGTGGTGGTGATGGTGGcaatgatgatggtgatggtgatggtgatggtggCGGTGATGATGTTGATGGTGGCGGTGATGATGTTGATGGTGGTGATGGCGGTGATGATGATGttggtggtggtgatgatggttgcgATGATGGTTATGATGGTGgcgatgatggtgatgatggtggCGGTGATGATGATGTTGGCGGtggtgaagatgatgatgatgatcgGAGTGGTgttggtggtgatgatgatggttgcggtgatgatgatgatagcgGAGTGGTGTTGGcggtga

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0016477 cell migration biological_process
GO:0048870 cell motility biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04612 Antigen processing and presentation
ko04658 Th1 and Th2 cell differentiation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247340.1 True 1472 mRNA 0.44 8 1627653 1646362

Neighbor

gene id symbol gene type direction distance location
dtx1 dtx1,LOC107692206,LOC107671029 coding downstream 104189 1494505 ~ 1523464 (-)
LOC122350264 dgcr6,LOC107572069,LOC107721026,LOC105899531 coding downstream 173123 1447000 ~ 1454530 (-)
pym1 LOC107701384 coding downstream 375137 1250060 ~ 1252516 (-)
LOC122350094 NA coding downstream 379289 1244834 ~ 1248364 (-)
ap3s1 ap3s1,LOC107661175,LOC107566394,LOC107729057 coding downstream 459196 1160400 ~ 1168457 (-)
LOC122349997 NA coding upstream 63996 1710358 ~ 1714221 (-)
LOC122350661 NA coding upstream 125620 1771982 ~ 1777474 (-)
si:dkey-178e17.3 LOC107754395,LOC107671045,LOC107657210,LOC107722861 coding upstream 190761 1837123 ~ 1852539 (-)
si:dkey-178e17.1 slc25a1,LOC107754397,LOC107670994,LOC107657208,LOC107722854,LOC108412497 coding upstream 211558 1857920 ~ 1878899 (-)
cltcl1 LOC107559593,LOC107670971,LOC108412499 coding upstream 234376 1880738 ~ 1926722 (-)
G60217 NA non-coding downstream 83524 1542446 ~ 1544129 (-)
G60199 NA non-coding downstream 113358 1457970 ~ 1514295 (-)
G60198 NA non-coding downstream 134493 1399728 ~ 1493160 (-)
G60194 NA non-coding downstream 152941 1384419 ~ 1474712 (-)
G60192 NA non-coding downstream 177723 1351967 ~ 1449930 (-)
LOC122350073 NA non-coding upstream 4558 1650920 ~ 1655010 (-)
LOC122350074 NA non-coding upstream 11376 1657738 ~ 1659992 (-)
G60209 NA non-coding upstream 15127 1661489 ~ 1671766 (-)
LOC122350072 NA non-coding upstream 17940 1664302 ~ 1666989 (-)
G60214 NA non-coding upstream 27154 1673516 ~ 1684040 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other downstream 21044 1561546 ~ 1606609 (-)
G60220 NA other downstream 47037 1576805 ~ 1580616 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other downstream 270700 1349171 ~ 1356953 (-)
commd10 commd10,LOC107728250,LOC107663591 other downstream 468367 1140698 ~ 1159286 (-)
G60098 NA other downstream 489501 1135401 ~ 1138152 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other upstream 86502 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other upstream 102700 1749062 ~ 1762549 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other upstream 413032 2059394 ~ 2061481 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other upstream 485007 2131369 ~ 2162003 (-)
G60564 pxnb other upstream 814569 2460931 ~ 2464371 (-)

Expression


Co-expression Network