LOC122350680 (LOC107599044,LOC107700337,LOC107757981)


Basic Information

Item Value
gene id LOC122350680
gene name LOC107599044,LOC107700337,LOC107757981
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 7375035 ~ 7377757 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247357.1
ATGGACCAAAAAGGGAAACATGGTAATCCTGGTCTACCTGGAAAACCAGCAAGAACACCAGGTTTGCAAGGGAGTCAAGGACTACCTGGACCAAAGGGCTCTGTAGGACCCAAAGGATTACCAGGACCCACCAGGCTAATAGGACCAAAGGGGATTCCGGGACTTCAAGGTGAAAAGGGAGATGTTGGACAAAAAGGACCAAAGGGtcatgttggcattagaggattGCAAGGACCCGTTGGACCACCAGGAGAAAAGGGAAAGCAAGGTGCCCCAGGGTACAAGGGACGACATGGGCCTAAAGGCGTACATGGCGACGCTGGTGCTCGTGGGCGCCCTGGTGACAAAGGATTCCCTGGTTCACCTGGTCCAACTGGAAGGAAGGTGTGTACTGAAGGTGTGATCGTAATTTATACAGCTCTGCTTATCTTTGCCCTGTACATGATCCAGGGTATGAAAGGAATTCAGGGAATATCAGGACTGAAAGGTGTGAAAGGTCGGAGAGGACCTCCTGGAAAACCAGGTATTCCTGTTCAGCAGATACCAGGACATCGTACTTCACCTCATGCTCAGAGAAGAGGATCACAAAATAAAGCAAGGTCATTATCCAGAAAGTCTCGATTTGACAAGCCTGAAGATGAGTTTGAGGAAAATAGCTTCTCGCAAGGCACTAAAGACAACCCAGCAACTACCTGCAGAGAGCTGAGTCTCATCCAGCCTCACCTCAGAGATGGGCACTACTATGTTGATCCAAACCATGGATGTCCATTTGATGCTCTCCGTGTGTTCTGCAATTTCACTGCTGGTGGTCTAACTTGTGTGTCTCCGTCCGGTCCAAAGTAA

Function

NR:

description
PREDICTED: collagen alpha-2(XI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247357.1 True 843 mRNA 0.49 12 7375035 7377757

Neighbor

gene id symbol gene type direction distance location
LOC122350872 soat1,LOC107657858,LOC107758003,LOC107700347 coding downstream 4580 7363235 ~ 7370455 (-)
cep350 cep350 coding downstream 206243 7137062 ~ 7168792 (-)
qsox1 qsox1,LOC107665072,LOC107755296,LOC107758006,LOC107699344,LOC107603198 coding downstream 239539 7112136 ~ 7135496 (-)
sin3b sin3b,LOC107755301,LOC107758010,LOC107699271 coding downstream 500070 6860907 ~ 6874965 (-)
def6a def6a,LOC107550223,LOC107755289,LOC107599059,LOC107757990,LOC107700524 coding downstream 515329 6850516 ~ 6859706 (-)
LOC122350884 NA coding upstream 2789 7380546 ~ 7382812 (-)
LOC122350867 bcar3,LOC107707585,LOC107599011,LOC107657879,LOC107699431,LOC107603218,LOC107757998 coding upstream 217226 7594983 ~ 7652306 (-)
LOC122350881 agbl4,LOC107657883,LOC107603279 coding upstream 311104 7688861 ~ 7740456 (-)
bend5 bend5,LOC107707580,LOC107757978,LOC107700377,LOC106584333 coding upstream 372658 7750415 ~ 7763209 (-)
agbl4 agbl4,LOC107603279,LOC106613892 coding upstream 658865 8036622 ~ 8137275 (-)
G61865 NA non-coding downstream 66695 7306112 ~ 7308340 (-)
G61860 cacna1e,LOC107707593,LOC107657843,LOC107599003 non-coding downstream 93870 7274590 ~ 7281165 (-)
G61782 NA non-coding downstream 512081 6862028 ~ 6862954 (-)
G61663 NA non-coding downstream 716751 6657498 ~ 6658284 (-)
G61640 NA non-coding downstream 813117 6561450 ~ 6561918 (-)
LOC122350888 NA non-coding upstream 12531 7390288 ~ 7394209 (-)
G61868 abl2,LOC107599009,LOC107699422,LOC107657876,LOC107707589,LOC107603207 non-coding upstream 168053 7545810 ~ 7548323 (-)
G61959 NA non-coding upstream 284460 7662217 ~ 7663259 (-)
G61965 NA non-coding upstream 371946 7749703 ~ 7778564 (-)
G61967 NA non-coding upstream 501660 7879417 ~ 7974020 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other downstream 272042 7091450 ~ 7102993 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other downstream 318606 6875349 ~ 7056429 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other downstream 558288 6814471 ~ 6816747 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other downstream 932053 6423742 ~ 6442982 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other downstream 1413929 5919961 ~ 5961106 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other upstream 299739 7677496 ~ 7687562 (-)
LOC122350139 elavl4 other upstream 739251 8117008 ~ 8232774 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other upstream 1014588 8392345 ~ 8416553 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other upstream 1269513 8647270 ~ 8649983 (-)
pola2 pola2,LOC107599808,LOC107657899 other upstream 1274547 8652304 ~ 8657286 (-)

Expression


Co-expression Network