chmp4bb (chmp4bb,LOC107756851,LOC107691553,LOC107702881,LOC107566963,LOC107573971)


Basic Information

Item Value
gene id chmp4bb
gene name chmp4bb,LOC107756851,LOC107691553,LOC107702881,LOC107566963,LOC107573971
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20465898 ~ 20468905 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247372.1
GGGCCTGAAGGCGGAAGTGAGACGATCAACAACTGAACACGGAACAGCGGCTGACGTTATCAGCGGTGTCTAGAAACAGACCGACTCGGGGGGATTTAGTTTAGTTTcgcaaaatacaaaacagcatGTCCGTGTTCGGCAAACTGTTCGGCGGCGGGGGCAAAGGAGGCAAAGGCCCGAGCCCACAAGAAGCGATCCAGAAACTCCGGGAGACAGAGGAGATGTTAACCAAGAAACAAGAGTACTTAGAGCAGAAGATCGACGCGGAACTGTTGATAGCAAAGAAAAACGGCACGAAAAACAAACGAGCTGCTTTACAGGCCCTGAAAAGAAAGAAGCGATATGAGAAGCAACTGGCTCAGATAGATGGCACTCTCTCTACCATCGAGTTCCAGCGAGAAGCGTTGGAGAATGCTAATACAAACACAGAAGTGCTTAAAAACATGGGCTTTGCAGCCAAGGCCATGAAGACAGCGCATGAAAACATGGATATAGACAAAGTGGACGACCTCATGCAGGACATCACAGAGCAGCAGGAGCTGGCGCAGGAGATTTCTGACGCCATTTCAAGGCCTGTAGGTTTTGGAGAAGACTTTGATGAGGATGAGCTTTTGGCTGAATTGGAGGAGTTGGAACAGGAGGAGCTGGACAAGAACCTGTTGGAAATTGGTGGCACAGAGGACGTCCCTCTGCCCAGTGTGCCTTCAAACCCATTACCCAAGAAACCTGTTGcccaaaaaaagagagaagaggaggatgaggatgacATGGAAGAACTCAAGGCATGGGCCATGTGAATTTACCCACTAGGACAGACTCTCGTTGCTCGTCGTGGTTGGCCTGTGCGGTCAAACCTGAGAACCTTCAGAGGGTTAACACTACAAAACAAATTTTACCATAGCTCTTGCAGAGAGGATAAAACAAGCCCAGAAAAACAAGTTACAGCGAAAATGGATGTGAAGAAGGTTAATCTGACAATAAAATCTGATACGTAATGACATAATACATGAAGTGACCCTTAAATGTTTGGCCATGGTTATTTAGGTAATGCATTGGTGTTTCTAATTTTTCCTCTTTTGATACGtttccctttttcttttctttttttgacctCTACTATTCAGAAAccggttgttttgttttgtcatggaGATAAGCATGTTTGCCAATACACAGTTTTCATATTCATGGTCAAGACGCTCTCAtctgatatattaaatatatttggtaCTGTTGTTTGCTTCAATCTTTGATCTCGGTGTGTTTTATTAGATTAATGTTATTCATGCACCTCTGACAGCATTAGCTTTTTCACTGTTTGTTGACGGTGACATATTATGGTTTGGTGACAACAAATTGAAATGACTGACATTAgctcagttatatatatataaatatataaattctgactgcccattatgttttgtttggtgCTGCATCAATATAGTTGCAGAGAATGACCTATTTAATAAGAGCTCTTTCCTATTGTACTCTTTCCAGGCCTGATTCTTTGATGTGCTGAAGGTTGATCTGATAGTAGATGGTTGCAATTATACAAAATCTATAccacatttttttcctcttattaGAGCATATACTTTTTTGAGATGCAAAAATGCTGTATCTTTTCAGGTTGAGGCGTATGTGGCATATGTGTACAtttgtatgttaaaaaaaaaaatcagatggcTTTTATTTGAGAGATCATTAAACTTTTGGATTCCTTTT

Function

symbol description
chmp4bb Involved in cilium assembly. Predicted to be located in cytosol and late endosome membrane. Predicted to be part of ESCRT III complex. Predicted to be active in cytoplasmic side of plasma membrane and multivesicular body. Human ortholog(s) of this gene implicated in cataract 31 multiple types. Orthologous to human CHMP4B (charged multivesicular body protein 4B).

NR:

description
PREDICTED: charged multivesicular body protein 4c

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0031902 late endosome membrane cellular_component

KEGG:

id description
K12194 CHMP4A_B, SNF7, VPS32A_B; charged multivesicular body protein 4A/B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247372.1 True 1728 mRNA 0.41 5 20465898 20468905

Neighbor

gene id symbol gene type direction distance location
LOC122350494 eif2s2,if2b,LOC107566961,LOC107756850,LOC107739644,LOC107691551,LOC107573966 coding downstream 1689 20460129 ~ 20464209 (-)
ywhabb ywhabb,LOC107702878,LOC107573968,LOC107756849,LOC107691552,LOC103023259 coding downstream 6870 20454630 ~ 20459028 (-)
LOC122351134 NA coding downstream 12767 20453031 ~ 20453131 (-)
mak16 mak16,LOC107591933,LOC107756848,LOC107566970,LOC107702820,LOC107722986,LOC107691589 coding downstream 23990 20439262 ~ 20441908 (-)
LOC122350835 LOC107691561,LOC107756843,LOC107566957 coding downstream 105728 20356650 ~ 20360170 (-)
adgrd2 LOC107721081,LOC107678382,LOC107563844,LOC107570012,LOC107714589 coding upstream 123560 20592465 ~ 20614297 (-)
bcl2l16 bcl2l16,LOC107714610,LOC107556213,LOC107698085,LOC107721090,LOC107678407 coding upstream 193264 20662169 ~ 20664529 (-)
si:dkey-90l8.3 si:dkey-90l8.3,LOC107714563,LOC107698086,LOC107556214,LOC107563853,LOC103024553,LOC108426648,LOC108264996 coding upstream 221925 20690830 ~ 20696690 (-)
ccn1l2 LOC107698087,LOC107556215,LOC107563854,LOC107678465,LOC107714581,LOC107721104 coding upstream 231118 20700023 ~ 20707196 (-)
stambpb stambpb,LOC107714511,LOC107721092,LOC107678409,LOC107563848,LOC103470718 coding upstream 279534 20748439 ~ 20756847 (-)
G65682 NA non-coding downstream 1142 20464551 ~ 20464756 (-)
LOC122350542 rsph14,LOC107756838,LOC107691565,LOC107702819,LOC107723028 non-coding downstream 181058 20281582 ~ 20284840 (-)
G65613 LOC107756819,LOC107723069,LOC107578151,LOC107571958 non-coding downstream 299526 20166056 ~ 20166372 (-)
LOC122350956 NA non-coding downstream 325698 20136603 ~ 20140200 (-)
G65596 adamts13,LOC107725310,LOC107548275,LOC107702807 non-coding downstream 361898 20103337 ~ 20104000 (-)
LOC122349883 NA non-coding upstream 22944 20491849 ~ 20505973 (-)
G65696 nr6a1a,nr6a1,LOC107721088,LOC107698081 non-coding upstream 90726 20559631 ~ 20559971 (-)
G65697 NA non-coding upstream 98253 20567158 ~ 20570293 (-)
G65704 NA non-coding upstream 141657 20610562 ~ 20610923 (-)
G65717 NA non-coding upstream 254361 20723266 ~ 20725454 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other downstream 44602 20415065 ~ 20421296 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other downstream 331553 20118007 ~ 20134345 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other downstream 1032607 19428738 ~ 19433291 (-)
LOC122351133 NA other downstream 1263521 19202277 ~ 19202377 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other downstream 1417929 19023713 ~ 19047969 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other upstream 250035 20718940 ~ 20723155 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other upstream 546088 21014993 ~ 21025831 (-)
G66086 si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 other upstream 1302563 21771468 ~ 21776620 (-)
G66090 NA other upstream 1315799 21784704 ~ 22254189 (-)
G66119 gfpt1,LOC107710818,LOC107752562,LOC107678434,LOC102792631 other upstream 1545068 22013973 ~ 22025791 (-)

Expression


Co-expression Network