cdo1 (cdo1,LOC107729053,LOC107573765,LOC103396961)


Basic Information

Item Value
gene id cdo1
gene name cdo1,LOC107729053,LOC107573765,LOC103396961
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1170649 ~ 1178671 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247376.1
TCGGACTCAAACACAGCGCCACAGCACCGACATGGAGCACACCGAGCTCGACAAGCCAGAAACTCTGGACGATCTGATCAAAACTCTGCACAAGATCTTTGAAAGTGACAGCGTCAATGTGGAGGAGGTGCAGAGCATCATGGAGTCCTACGAAAGCAAACCTCACGAGTGGATGAAATACGCTAAATTTGACCAGTACAGATACACCCGGAATCTGGTGGACGAGGGAAACGGGAAGTTTAACCTGATGATTCTGTGCTGGGGTGAAGGACACGGCAGCAGCATCCACGATCACACAGACTCCCACTGCTTCCTGAAGCTGCTCCAGGGTCAGCTGAAGGAGACGCTCTTCGACTGGCCCGACCGCAAGCTGCAGGCCGGCATGAAGCAGAAGACCCAGCAGGTGCTGCTGGAGAACCAGTGCGCTTACATCAACGACTCCCTCGGCCTTCATCGGGTGGAGAACGTGAGCCACACGGAGACGGCCGTCAGCCTGCACCTCTACAGCCCGCCCTTCCAGACCTGCCAGACCTTCGACCAGCGCACCGGGCACCGCAACAGCGTCAAGATGACCTTCTGGAGCAAGTTCGGCGAGAGGACGCCGTATGAAAGCAGCGTGTCGCAGGAGAACAACTGAGACCAGAGAAGCCCGGCGGCGCTCGATGCAGATTCACTCTTAAATTCAAACGCAGCGATGTTTAAATCTTGATCCAACTCTTTTTTTCACTAAGATTCGAAGAGGACAGAGGGAAGAGGCTTTCGCTGGTGATTGGAGTCTCTTCATCGTGGCCTAGTTTAGCGCGGCGAGCGCGGCACGGGTCTGAATAGACGTATTAGTCCAGCCGTTCTCCCAGCATTCCTGTCTAATCACGCTTTTGTACTGTTTCGGGCCGAGAGTGTGTCATTATGAGAAGAATCTGTCTGTTGTCCGAATGAAAGCGCTGTCCTGAATCCTGCTCCAGCAGAACACAGCACTTGCTCTCCGTCTCCAATCGTTTCCAGATCAGTCTCTGAATGGAAGAGTTGATGTTTCTCAGCCGTCTGTAATCCGTGTCTCGACAAACAAATATGCGTTTGTAAACTggagcttttatttaaaatggaccTGAATCTTAGCTGGAAATTCATTTTTGTCTTAACATTTgaagttaataaaatgtttcccAAATCTTG
>XM_043247377.1
CTCGGACTCAAACACAGCGCCACAGCACCGACATGGAGCACACCGAGCTCGACAAGCCAGAAACTCTGGACGATCTGATCAAAACTCTGCACAAGATCTTTGAAAGTGACAGCGTCAATGTGGAGGAGGTGCAGAGCATCATGGAGTCCTACGAAAGCAAACCTCACGAGTGGATGAAATACGCTAAATTTGACCAGTACAGCAGCATCCACGATCACACAGACTCCCACTGCTTCCTGAAGCTGCTCCAGGGTCAGCTGAAGGAGACGCTCTTCGACTGGCCCGACCGCAAGCTGCAGGCCGGCATGAAGCAGAAGACCCAGCAGGTGCTGCTGGAGAACCAGTGCGCTTACATCAACGACTCCCTCGGCCTTCATCGGGTGGAGAACGTGAGCCACACGGAGACGGCCGTCAGCCTGCACCTCTACAGCCCGCCCTTCCAGACCTGCCAGACCTTCGACCAGCGCACCGGGCACCGCAACAGCGTCAAGATGACCTTCTGGAGCAAGTTCGGCGAGAGGACGCCGTATGAAAGCAGCGTGTCGCAGGAGAACAACTGAGACCAGAGAAGCCCGGCGGCGCTCGATGCAGATTCACTCTTAAATTCAAACGCAGCGATGTTTAAATCTTGATCCAACTCTTTTTTTCACTAAGATTCGAAGAGGACAGAGGGAAGAGGCTTTCGCTGGTGATTGGAGTCTCTTCATCGTGGCCTAGTTTAGCGCGGCGAGCGCGGCACGGGTCTGAATAGACGTATTAGTCCAGCCGTTCTCCCAGCATTCCTGTCTAATCACGCTTTTGTACTGTTTCGGGCCGAGAGTGTGTCATTATGAGAAGAATCTGTCTGTTGTCCGAATGAAAGCGCTGTCCTGAATCCTGCTCCAGCAGAACACAGCACTTGCTCTCCGTCTCCAATCGTTTCCAGATCAGTCTCTGAATGGAAGAGTTGATGTTTCTCAGCCGTCTGTAATCCGTGTCTCGACAAACAAATATGCGTTTGTAAACTggagcttttatttaaaatggaccTGAATCTTAGCTGGAAATTCATTTTTGTCTTAACATTTgaagttaataaaatgtttcccAAATCTTG

Function

symbol description
cdo1 Predicted to enable cysteine dioxygenase activity and ferrous iron binding activity. Predicted to be involved in L-cysteine catabolic process. Is expressed in gut; intestinal bulb; lens; liver; and yolk syncytial layer. Orthologous to human CDO1 (cysteine dioxygenase type 1).

NR:

description
PREDICTED: cysteine dioxygenase type 1

GO:

id name namespace
GO:0042412 taurine biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0046439 L-cysteine metabolic process biological_process
GO:0005506 iron ion binding molecular_function
GO:0017172 cysteine dioxygenase activity molecular_function

KEGG:

id description
K00456 CDO1; cysteine dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247376.1 True 1173 mRNA 0.51 5 1170650 1178671
XM_043247377.1 False 1096 mRNA 0.51 4 1170649 1178671

Neighbor

gene id symbol gene type direction distance location
sema6a LOC107661172,LOC107663594 coding upstream 41147 1069841 ~ 1129502 (+)
hsd17b4 hsd17b4 coding upstream 154084 1005559 ~ 1016565 (+)
LOC122351116 ppic,LOC107704600,LOC107713556,LOC107726227,LOC107566397,LOC100333141,LOC107703627 coding upstream 247441 918543 ~ 923208 (+)
LOC122351049 cep120,zgc:163014,LOC107726217,LOC107712640,LOC107694735 coding upstream 293702 853071 ~ 876947 (+)
LOC122350421 slc12a2,LOC107697601,LOC107712558,LOC108442001,LOC108265961,LOC107573338,LOC105890695,LOC107726215 coding upstream 328717 822359 ~ 841932 (+)
tmed7 LOC107729055,LOC107728255,LOC107661170,LOC108265697,LOC107663596,LOC107572957,LOC107573769 coding downstream 7098 1185769 ~ 1187485 (+)
LOC122350615 fem1c,LOC107728259,LOC107572967,LOC106580179 coding downstream 9677 1188348 ~ 1199937 (+)
LOC122350068 ccdc112,LOC107573794,LOC107578772 coding downstream 25570 1204241 ~ 1209643 (+)
trim36 trim36 coding downstream 41053 1219724 ~ 1235577 (+)
LOC122350095 NA coding downstream 58261 1236932 ~ 1243158 (+)
G59877 NA non-coding upstream 5873 1162420 ~ 1164776 (+)
G59876 NA non-coding upstream 9489 1156922 ~ 1161160 (+)
G59845 LOC107698412,LOC107571775,LOC107726226,LOC100537613 non-coding upstream 147735 1021192 ~ 1022914 (+)
G59814 NA non-coding upstream 193943 973486 ~ 976706 (+)
G59824 NA non-coding upstream 210478 958679 ~ 960171 (+)
G59898 NA non-coding downstream 89513 1268184 ~ 1268392 (+)
G59899 NA non-coding downstream 89767 1268438 ~ 1268674 (+)
G59914 NA non-coding downstream 213472 1392143 ~ 1393428 (+)
G59903 NA non-coding downstream 217376 1396047 ~ 1491642 (+)
G59902 dtx1,LOC107692206,LOC107572068,LOC107671029,LOC101885597 non-coding downstream 223088 1401759 ~ 1494731 (+)
znf608 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107704598,LOC107573349,LOC107726216 other upstream 318645 842077 ~ 852004 (+)
G59807 NA other upstream 365810 803653 ~ 804839 (+)
cdc14b cdc14b,LOC107661524,LOC107704583,LOC107568104,LOC107726879,LOC107570987 other upstream 619962 537775 ~ 550687 (+)
pggt1b pggt1b other downstream 32144 1210815 ~ 1218804 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other downstream 736789 1915460 ~ 1918371 (+)
polb polb,LOC107670984,LOC107722860 other downstream 836188 2014859 ~ 2020034 (+)
LOC122350053 NA other downstream 852153 2030824 ~ 2035980 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other downstream 859028 2037699 ~ 2039836 (+)

Expression


Co-expression Network