LOC122350711 (LOC107550583,LOC107555108,LOC107669256)


Basic Information

Item Value
gene id LOC122350711
gene name LOC107550583,LOC107555108,LOC107669256
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 16191087 ~ 16192344 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247395.1
ATAAAGTGATTCCTGGGACATCAATTCCACTATATTTCACCCAGCGATTTATCGTATTTGCTGCGTTGCTTCGCGGTCAATATTTTGCGCACGATAGCGACCCGTTAACCACCGCACATGAAATAATCAAGttgtttttgcatgtgcatTATCCGACTTTATTTCACCCATCTCAGTGACTGAGCACGAGCGCATCGATTGTGTTGCGGCGGACTATGGACGAGCAAGCCCGGATCATGCAGGCTCTCGGCGGTGTCAGCCTGGCCGGTCACTCGGTGCAGGGAGGCATGGCTCTGCCGCCTCCACATGGACACGACGGAACCGATGGGGATGGAAGAAAACAAGACATCGGTGACATTCTGCATCAGATCATGACCATCACCGACCAAAGCCTGGACGAGGCGCAAGCAAAGAAACATGGGCTCAACTGTCACAGAATGAAGCCAGCCCTCTTCAGTGTCCTCTGCGAGATCAAAGAGAAAACAGGTAAGATAATGCATACCGAACAAAAAGGGCAAAATTACGCACAGACATGtcaagaagagaaaaaaacaacaacaatacagtGCCACTAA

Function

NR:

description
PREDICTED: pre-B-cell leukemia transcription factor 3 isoform X4

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247395.1 True 575 mRNA 0.49 2 16191087 16192344

Neighbor

gene id symbol gene type direction distance location
LOC122351126 pbx3b,pbx3,LOC107550583,LOC107669256,LOC108434408,LOC107555108 coding downstream 198829 15967500 ~ 15992258 (-)
pbx3b pbx3b,pbx3,LOC107550583,LOC107669256,LOC107555108,LOC108434408 coding downstream 242304 15833965 ~ 15948783 (-)
LOC122350591 lmx1b,lmx1bb,LOC107550585,LOC107723253,LOC107564042,LOC107753135,LOC108434405 coding downstream 542765 15578108 ~ 15648322 (-)
lmx1bb lmx1bb,lmx1b,LOC107550585,LOC107723253,LOC107753135,LOC107564042 coding downstream 681892 15496493 ~ 15509195 (-)
LOC122350755 zbtb34,LOC107723248,LOC107550586,LOC107727329,LOC107564041,LOC107727326 coding downstream 783917 15393349 ~ 15407170 (-)
LOC122350700 LOC107550582,LOC107723237 coding upstream 121160 16313504 ~ 16344494 (-)
setd1bb LOC107659604,LOC107550568,LOC107753154,LOC107669245,LOC107555095 coding upstream 161564 16353908 ~ 16363944 (-)
LOC122350716 LOC107550565,LOC107659586,LOC107723226,LOC107723224,LOC107550564 coding upstream 206232 16398576 ~ 16407398 (-)
LOC122350717 rimbp2,LOC107684511,LOC107753130,LOC108247306,LOC107081823 coding upstream 570953 16763297 ~ 16835560 (-)
rflna LOC107687957,LOC107553832,LOC107684501,LOC107576363 coding upstream 1263798 17456142 ~ 17464579 (-)
G64481 NA non-coding downstream 58275 16131611 ~ 16132812 (-)
LOC122351008 NA non-coding downstream 96527 16079362 ~ 16094560 (-)
G64476 gapvd1,LOC107669250,LOC107753155,LOC107555093,LOC107723237,LOC107550582 non-coding downstream 127334 16062879 ~ 16063753 (-)
LOC122351100 NA non-coding downstream 409200 15767668 ~ 15781887 (-)
G64409 NA non-coding downstream 539228 15651636 ~ 15651859 (-)
LOC122350933 NA non-coding upstream 69193 16261537 ~ 16283392 (-)
G64502 LOC107723241,LOC107659605,LOC107550566 non-coding upstream 180977 16373321 ~ 16376597 (-)
G64503 LOC107723244 non-coding upstream 184770 16377114 ~ 16377369 (-)
G64508 NA non-coding upstream 187517 16379861 ~ 16384905 (-)
G64531 NA non-coding upstream 267613 16459957 ~ 16460330 (-)
mvb12bb mvb12b,LOC107550570,LOC107753158,LOC107723228 other downstream 490191 15649226 ~ 15700896 (-)
G64353 hmcn2,LOC107723245,LOC107659581,LOC107570300 other downstream 906957 15283861 ~ 15284130 (-)
G64228 NA other downstream 1409377 14779531 ~ 14781710 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other downstream 1459696 14723712 ~ 14731391 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other downstream 1735844 14385600 ~ 14455243 (-)
LOC122350093 NA other upstream 215490 16407834 ~ 16409696 (-)
LOC122350945 drd2b,LOC107745132,LOC107705176,LOC107691748,LOC107664308,LOC107600777,LOC107556418,LOC108428674 other upstream 854123 17046467 ~ 17096795 (-)
LOC122350953 NA other upstream 1128032 17320376 ~ 17401228 (-)
zgc:194007 NA other upstream 1167041 17359385 ~ 17361850 (-)
kcnip3a kcnip3a,LOC108440810,LOC107684506,LOC107553838,LOC107566017,LOC102307840,LOC108264878,LOC101482209,LOC103397788,LOC107753121,LOC107687962,LOC102210345,LOC108233759,LOC102228939,LOC102799407,LOC104951840,LOC102798027 other upstream 1408914 17601258 ~ 17645511 (-)

Expression


Co-expression Network