LOC122350716 (LOC107550565,LOC107659586,LOC107723226,LOC107723224,LOC107550564)


Basic Information

Item Value
gene id LOC122350716
gene name LOC107550565,LOC107659586,LOC107723226,LOC107723224,LOC107550564
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 16398576 ~ 16407398 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247401.1
AACAGAGACTGGAAAGACCGGTAAGACCAGCAAAAAATTCCAAACGTTAGCTGAAGTCACTTCTTTAATTTGTAGGCTGTAACACTCAACAACACGACCGTACACTAAAGTACTGAGATTCGTTTGCTAAGAGAATGCGGTctcttgtttgtcttttgtCGTATTTGACAGCTGTTAAAGCTGGTTCTCACTCGCTCATGGTTTTTGCCACATACATTGCTGGACAGACAGAGTTTCCTGAGTTCACTCTTGTGCTGATGTTAGATGACGTGGAAGTGATATACTACGACTCGGCATCGCTGAAAGCTGTCTATCGCAGTCAGAGTAATTCAAGTGATGACAATGTCGCAGGTAGTATATTCGGGGATATATATGACCTCATGAAAGATCGAACATTTTATCTTAAGGACCACCAAAACTGCACAGATGGTTTGCATGTTTATCAGAAACGTGTTGGATGTGAATTGCTTGACAATGATCAGCCAGGGTTGTTTCTTTCATGGGATGCTTTTAACGGACAAAATACTGAGGAGTTCACCTTTGATGTGGTAAAAAGAACGATGCAAATGAATTTACCATGGATGAGAATAAAAGGCATGGGTCAGATGGAATGGCTTCATGTGAAGTTTCTGTATGAACATGTGTATCATCCCATTTGCATAAAAACTTTACGGGCATTCCTGGAAAAAGAGAAGAACACAGTGACTCGAAAATTGAAACCCAGAGTCAGGCTCATGAAGAAGACGCTCTCAGACTCTGGTGGGCTTCAGATCAGCTGTCTGGCCACTGGTTTTTACCCGCGTCACATTAACCTGACCCTGTTCAGAGACGGTCAGCCTGTGGATGAGGATCAGATCACAGGAGGAGAGATTCTGCCCAACGGAGACGGGACTTACCAGATGAGGAAGACTTTGGTGATCGCTGAAGAAGAGCTAAATGACGCATATTACAAATGCACAGCAAACTACTTAAACCTGGACAACAAACTGGACATTGCTTTTGatGAGGATCTAGAAAAATCTGacttcggatcctctgctctgTCTATAATTATCAGTGTGCTGGTGTTAATATTTGTGGCTGTTTTCGTCATAATCGCACTCATCAATTGGAGGATGAGACGAGCTGCCGAACCAGGCTCCAGTACTTCACAACAAAGTGGATATTCACCTACTTCAAgtTCTCACTCACTGATGGCTTTGGCAACGTATATAGTTGGACAAACACCATTTCCTGAGTTCAGTGCTGTGCTGATGTTGGATGACGTACAAATAGGATATTATGACTCGGTCACGTGGAGTGTTATGCACCGCACTCCAAGAGATTCAAAGTACCAAAATGAAGAGAAAAGTGATGCTGATATAGTATTTCTTAATATGTATAACACCATGAAAGAGCGAGAAGTTTATTTTAAGGAGCATATAAATCACACAAATGGTTTACATGTTCAACAGAGAATCGCTGGATGCGAACTGTTGGATAATGATAAGCCAGGACCATTGCAGAGATGGGATGCCTTTAATGGACAAGAAATCGGAGAATACACCTttgacacagaaaaaaatgtccAGACAAAAATAATATGGGGGCCATGGGGTCAACTAACAAGACTTCATATGAGGtttctgtgtgaaaatatttatcaaCCAATTTGCATTAAAGTTTTGCGTAGGTACTTGTACGTAAAAAAGAATAGTGTAATGAGAAAAGTTAAACCCAGAGTCAGACTCATGAAGAAGACGCTCTCAGACTCTGGTGGTCTTCAGATCAGCTGTCTGGCCACTGGTTTTTACCCGCGTCACATTAACCTGACCCTGTTCAGAGACGGTCAGCCTGtggatgatgatcagatcacAGGAGGAGAGATTCTGCCCAACGGAGACGGGACTTACCAGATGAGGAAGACTTTGGTGATCGCTGAAGAAGAGCTACGTGAGGAACATAAATACAACTGTTCAATGAAGCGCCTCAGTCTGGACAACAAACTGGATATTATTTCtgATGTGGCTGAATCTGACCCAGGATCATCCACTCAGTCTGTAGTTTTCAGTGTGATGGTGTTCATGTTTGTGGCTGTTCTCATCATAACTGCTCTCATCGTATGGAGGAAGAGACGAGCTGCTGAACAAGCATTCAAGAAGTCACAAAGTGATTATTCTCTTACTGCATcttccaCCAATGATTAACCATGCTAAGTGAGTCTATGGTCCTACATTAAAGCCAAGACAAAATGCAAAACTTTGCAATGTAAAAATGAGCCCATATGGCCTGAAATCATGTTGTTTAAAGTGCCTCCATCACTCCATTTTTGGTGGTCTTCCACTAGACGTTTTCATGCATCAAGGTCAAGGCTTTTCCTTTTCTcagaatatgcatttaatatcacCTTGTTTTCCAATTCCCAAACTATTCTCATTCTTCCAGCCGTTCCAAGGATCCATGAATGTTTCTGTGAGCCctctctgctctgattggttagATGGCCCAGTGTGTTTTATGGGTCTACTACGTATAGTGCGTTGGAAACAATATGCTCATTGCTAGAATTCCAAATTTGTAAAGCTCgatagaaaatataatataaaatataatagttttcaGCAATATGGGGGTCATACTAGATAGTACTGAAAGCAAAGGTTTGCATACTTTTTACAACAGATATGTAACACTGAATCCCTTTTCTCAATAAATGAGTTAACTGCTCTTTTAACATA

Function

NR:

description
PREDICTED: DLA class I histocompatibility antigen, A9/A9 alpha chain-like

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0019882 antigen processing and presentation biological_process
GO:0005886 plasma membrane cellular_component
GO:0003823 antigen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247401.1 True 2717 mRNA 0.41 12 16398576 16407398

Neighbor

gene id symbol gene type direction distance location
setd1bb LOC107659604,LOC107550568,LOC107753154,LOC107669245,LOC107555095 coding downstream 34632 16353908 ~ 16363944 (-)
LOC122350700 LOC107550582,LOC107723237 coding downstream 54082 16313504 ~ 16344494 (-)
LOC122350711 LOC107550583,LOC107555108,LOC107669256 coding downstream 206232 16191087 ~ 16192344 (-)
LOC122351126 pbx3b,pbx3,LOC107550583,LOC107669256,LOC108434408,LOC107555108 coding downstream 406318 15967500 ~ 15992258 (-)
pbx3b pbx3b,pbx3,LOC107550583,LOC107669256,LOC107555108,LOC108434408 coding downstream 449793 15833965 ~ 15948783 (-)
LOC122350717 rimbp2,LOC107684511,LOC107753130,LOC108247306,LOC107081823 coding upstream 355899 16763297 ~ 16835560 (-)
rflna LOC107687957,LOC107553832,LOC107684501,LOC107576363 coding upstream 1048744 17456142 ~ 17464579 (-)
prnpa LOC107736233 coding upstream 1133428 17540826 ~ 17543078 (-)
rassf2a rassf2a,LOC107687959,LOC107553834,LOC107742747 coding upstream 1145122 17552520 ~ 17567609 (-)
slc23a2 slc23a2,LOC107753122,LOC107687958,LOC107684505 coding upstream 1162022 17569420 ~ 17597847 (-)
G64508 NA non-coding downstream 13671 16379861 ~ 16384905 (-)
G64503 LOC107723244 non-coding downstream 21207 16377114 ~ 16377369 (-)
G64502 LOC107723241,LOC107659605,LOC107550566 non-coding downstream 21979 16373321 ~ 16376597 (-)
LOC122350933 NA non-coding downstream 115184 16261537 ~ 16283392 (-)
G64481 NA non-coding downstream 265764 16131611 ~ 16132812 (-)
G64531 NA non-coding upstream 52559 16459957 ~ 16460330 (-)
G64556 NA non-coding upstream 150670 16558068 ~ 16661411 (-)
G64582 NA non-coding upstream 244160 16651558 ~ 16690514 (-)
G64599 NA non-coding upstream 275839 16683237 ~ 16683803 (-)
G64634 NA non-coding upstream 637056 17044454 ~ 17044971 (-)
mvb12bb mvb12b,LOC107550570,LOC107753158,LOC107723228 other downstream 697680 15649226 ~ 15700896 (-)
G64353 hmcn2,LOC107723245,LOC107659581,LOC107570300 other downstream 1114446 15283861 ~ 15284130 (-)
G64228 NA other downstream 1616866 14779531 ~ 14781710 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other downstream 1667185 14723712 ~ 14731391 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other downstream 1943333 14385600 ~ 14455243 (-)
LOC122350093 NA other upstream 436 16407834 ~ 16409696 (-)
LOC122350945 drd2b,LOC107745132,LOC107705176,LOC107691748,LOC107664308,LOC107600777,LOC107556418,LOC108428674 other upstream 639069 17046467 ~ 17096795 (-)
LOC122350953 NA other upstream 912978 17320376 ~ 17401228 (-)
zgc:194007 NA other upstream 951987 17359385 ~ 17361850 (-)
kcnip3a kcnip3a,LOC108440810,LOC107684506,LOC107553838,LOC107566017,LOC102307840,LOC108264878,LOC101482209,LOC103397788,LOC107753121,LOC107687962,LOC102210345,LOC108233759,LOC102228939,LOC102799407,LOC104951840,LOC102798027 other upstream 1193860 17601258 ~ 17645511 (-)

Expression


Co-expression Network