LOC122350717 (rimbp2,LOC107684511,LOC107753130,LOC108247306,LOC107081823)


Basic Information

Item Value
gene id LOC122350717
gene name rimbp2,LOC107684511,LOC107753130,LOC108247306,LOC107081823
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 16763297 ~ 16835560 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247402.1
ATGACACACAGTTGGACGCGGCTGTCTTTACGGGAATCATCTTTTAACGGAAGAGCGGCGGAAGAGaaacTGAGGAATGAGGTGTTTCCATTACATTTATCGCCTCAGCATGTGGAAGCATACCGGCTGCTAGAGGACAGGAAACACAAACTCTCACCCGAGACCGCCGCCCTCTACCTGCTTCGACAACAGCACAAACTATTGGAGACTGAGATCAGCAGGAAGAGGAAGGAGTGCGAAGTCCTTGAGGAGGAGGTGAAGAAAAAAAGCCAGTCATGTCAAACTCTGGAGAGTGAGCTTCAGCATGTTCTGCAGGAGAAAGCACGTCTGAATCTCCGCTTGTTCAACGATACCCAGAAGGCAGCAAAGTATGAGCAGgTGAAAAGTGAGTATGAACAGCTGCAGGAGGCTCTGTACACTGTGACAGTGGAGAGAGATTGCGCTCTGTTGGAGAGGACTGAGCTCCAAGGCAAACTGGAGAACCTAGAGCAGGTGCTGAAGCATATGCGAGAGGCTGCAGAGAGGAGGCAGCAGCTAGAATTAGAGCATGAACAAGCCTTGGCCGTCCTCAGTGCCAAGCAGCAGGAGATTGACCTTCTGCAGAAGGCTCAGGTTGAGGCTAAGAAGGAACATGAAGGTGCCGTCCATCTGTTAGAGaatcACTTGGACAGCATGCAGgCTAAAGTGAGAGAACTGGAGGAAAAATGCCGGACCATAGGTGAGCAGTTTAACCTGCTGTCGAAGAGTTGGAGAAGTTCAGGTTGCAGGCTGGGAAGTTAG

Function

symbol description
rimbp2 Predicted to be involved in neuromuscular synaptic transmission. Predicted to be located in plasma membrane and synapse. Predicted to be active in presynaptic active zone cytoplasmic component.

NR:

description
PREDICTED: peripheral-type benzodiazepine receptor-associated protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247402.1 True 780 mRNA 0.51 9 16763297 16835560

Neighbor

gene id symbol gene type direction distance location
LOC122350716 LOC107550565,LOC107659586,LOC107723226,LOC107723224,LOC107550564 coding downstream 355899 16398576 ~ 16407398 (-)
setd1bb LOC107659604,LOC107550568,LOC107753154,LOC107669245,LOC107555095 coding downstream 399353 16353908 ~ 16363944 (-)
LOC122350700 LOC107550582,LOC107723237 coding downstream 418803 16313504 ~ 16344494 (-)
LOC122350711 LOC107550583,LOC107555108,LOC107669256 coding downstream 570953 16191087 ~ 16192344 (-)
LOC122351126 pbx3b,pbx3,LOC107550583,LOC107669256,LOC108434408,LOC107555108 coding downstream 771039 15967500 ~ 15992258 (-)
rflna LOC107687957,LOC107553832,LOC107684501,LOC107576363 coding upstream 620582 17456142 ~ 17464579 (-)
prnpa LOC107736233 coding upstream 705266 17540826 ~ 17543078 (-)
rassf2a rassf2a,LOC107687959,LOC107553834,LOC107742747 coding upstream 716960 17552520 ~ 17567609 (-)
slc23a2 slc23a2,LOC107753122,LOC107687958,LOC107684505 coding upstream 733860 17569420 ~ 17597847 (-)
crybb2 crybb2,LOC107565327,LOC107753119,LOC107684510,LOC107553840,LOC107687964,LOC107748132 coding upstream 861615 17697175 ~ 17699415 (-)
G64582 NA non-coding downstream 72783 16651558 ~ 16690514 (-)
G64599 NA non-coding downstream 79494 16683237 ~ 16683803 (-)
G64556 NA non-coding downstream 101886 16558068 ~ 16661411 (-)
G64531 NA non-coding downstream 302967 16459957 ~ 16460330 (-)
G64508 NA non-coding downstream 378392 16379861 ~ 16384905 (-)
G64634 NA non-coding upstream 208894 17044454 ~ 17044971 (-)
LOC122350118 NA non-coding upstream 526609 17362169 ~ 17365510 (-)
G64724 NA non-coding upstream 575449 17411009 ~ 17412872 (-)
LOC122350842 NA non-coding upstream 822249 17657809 ~ 17660978 (-)
G64757 NA non-coding upstream 825789 17661349 ~ 17665132 (-)
LOC122350093 NA other downstream 353601 16407834 ~ 16409696 (-)
mvb12bb mvb12b,LOC107550570,LOC107753158,LOC107723228 other downstream 1062401 15649226 ~ 15700896 (-)
G64353 hmcn2,LOC107723245,LOC107659581,LOC107570300 other downstream 1479167 15283861 ~ 15284130 (-)
G64228 NA other downstream 1981587 14779531 ~ 14781710 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other downstream 2031906 14723712 ~ 14731391 (-)
LOC122350945 drd2b,LOC107745132,LOC107705176,LOC107691748,LOC107664308,LOC107600777,LOC107556418,LOC108428674 other upstream 210907 17046467 ~ 17096795 (-)
LOC122350953 NA other upstream 484816 17320376 ~ 17401228 (-)
zgc:194007 NA other upstream 523825 17359385 ~ 17361850 (-)
kcnip3a kcnip3a,LOC108440810,LOC107684506,LOC107553838,LOC107566017,LOC102307840,LOC108264878,LOC101482209,LOC103397788,LOC107753121,LOC107687962,LOC102210345,LOC108233759,LOC102228939,LOC102799407,LOC104951840,LOC102798027 other upstream 765698 17601258 ~ 17645511 (-)
LOC122350290 LOC107569538,LOC107747839,LOC107554410,LOC107703160,LOC107694233 other upstream 1271893 18107453 ~ 18112701 (-)

Expression


Co-expression Network