rflna (LOC107687957,LOC107553832,LOC107684501,LOC107576363)


Basic Information

Item Value
gene id rflna
gene name LOC107687957,LOC107553832,LOC107684501,LOC107576363
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 17456142 ~ 17464579 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247412.1
ATGGTGGggcatttacattttcaaGCTATGGATGAGAGTTTGAAAGGAAAGAACAGGAGGACTGCAGTAGTCGGTTCAGGACTCCCTCCAGCCCCAAGTCCGCCTTCTTCTCTCTGTCACGGGAGTTCTCGAGAGTCGCGCTCCGGCAGCTGCTCAGCCCCAAACGAGCTGCAAAGATACTGCAGAAAAGGCCGGGAAGGCAAACTGCTGCCATACTTGCTCCTAAACTCTCAAGGTCCAGATGCGAAGTCACGCATGTACCCTGTGGTCCACGGAGAGAGCATCGAGGTTAACCCCAAACCAGAAAAAGAGATCAAGTTCAACTCTGCGGTGAAGTACGCTTCAGAAAGACACTTCCGTGACCAGGTGTTCTGCGCCCAGGTCCCGACCGCCACATCCTTCAGCGAGACGGTGGTGGCCGTTCACAACTGCACGCGTGGGCGCAGCTACAAGTCAGAGGTTCACACCGAGCCACGGCACAGGGCGCTACACTAAAGCACCACCATCGTGTTCCCCAAACACACCCGGAATACATACCGCACCACGCTCAACTACAACGGCAACAGAAACACAGCCGGCGCGGGTTTTGTGTTCACAGTCAGGCTGGAGTACGAGGACGCCAGCCCATGCATCATTACACAGAAGACCTCTGAGAGACGCGTGATCCTTCCCAGAATTCAAAAACTCCCTTTGGTTAGAGAGCTACGAGAACGTGGAGAGTTTCAGGAGCCGCCCGACGTGCTGATAATTCAGTGGCCAAAATAA

Function

NR:

description
refilin-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247412.1 True 765 mRNA 0.54 11 17456142 17464579

Neighbor

gene id symbol gene type direction distance location
LOC122350717 rimbp2,LOC107684511,LOC107753130,LOC108247306,LOC107081823 coding downstream 620582 16763297 ~ 16835560 (-)
LOC122350716 LOC107550565,LOC107659586,LOC107723226,LOC107723224,LOC107550564 coding downstream 1048744 16398576 ~ 16407398 (-)
setd1bb LOC107659604,LOC107550568,LOC107753154,LOC107669245,LOC107555095 coding downstream 1092198 16353908 ~ 16363944 (-)
LOC122350700 LOC107550582,LOC107723237 coding downstream 1111648 16313504 ~ 16344494 (-)
LOC122350711 LOC107550583,LOC107555108,LOC107669256 coding downstream 1263798 16191087 ~ 16192344 (-)
prnpa LOC107736233 coding upstream 76247 17540826 ~ 17543078 (-)
rassf2a rassf2a,LOC107687959,LOC107553834,LOC107742747 coding upstream 87941 17552520 ~ 17567609 (-)
slc23a2 slc23a2,LOC107753122,LOC107687958,LOC107684505 coding upstream 104841 17569420 ~ 17597847 (-)
crybb2 crybb2,LOC107565327,LOC107753119,LOC107684510,LOC107553840,LOC107687964,LOC107748132 coding upstream 232596 17697175 ~ 17699415 (-)
LOC122350049 LOC107748126,LOC107553823,LOC107687983,LOC107549670,LOC107697074,LOC107697075 coding upstream 236933 17701512 ~ 17706491 (-)
G64724 NA non-coding downstream 43270 17411009 ~ 17412872 (-)
LOC122350118 NA non-coding downstream 90632 17362169 ~ 17365510 (-)
G64634 NA non-coding downstream 411171 17044454 ~ 17044971 (-)
G64582 NA non-coding downstream 765628 16651558 ~ 16690514 (-)
G64599 NA non-coding downstream 772339 16683237 ~ 16683803 (-)
LOC122350842 NA non-coding upstream 193230 17657809 ~ 17660978 (-)
G64757 NA non-coding upstream 196770 17661349 ~ 17665132 (-)
G64777 NA non-coding upstream 281106 17745685 ~ 17745924 (-)
G64942 lzts1,LOC107712471,LOC107687967,LOC107550927,LOC107554439,LOC107753115,LOC107703152 non-coding upstream 564956 18029535 ~ 18032726 (-)
LOC122350292 hnf1a,LOC107687971,LOC107550982,LOC107712475 non-coding upstream 631516 18096095 ~ 18103013 (-)
LOC122350953 NA other downstream 54914 17320376 ~ 17401228 (-)
zgc:194007 NA other downstream 94292 17359385 ~ 17361850 (-)
LOC122350945 drd2b,LOC107745132,LOC107705176,LOC107691748,LOC107664308,LOC107600777,LOC107556418,LOC108428674 other downstream 359347 17046467 ~ 17096795 (-)
LOC122350093 NA other downstream 1046446 16407834 ~ 16409696 (-)
mvb12bb mvb12b,LOC107550570,LOC107753158,LOC107723228 other downstream 1755246 15649226 ~ 15700896 (-)
kcnip3a kcnip3a,LOC108440810,LOC107684506,LOC107553838,LOC107566017,LOC102307840,LOC108264878,LOC101482209,LOC103397788,LOC107753121,LOC107687962,LOC102210345,LOC108233759,LOC102228939,LOC102799407,LOC104951840,LOC102798027 other upstream 136679 17601258 ~ 17645511 (-)
LOC122350290 LOC107569538,LOC107747839,LOC107554410,LOC107703160,LOC107694233 other upstream 642874 18107453 ~ 18112701 (-)
G64967 NA other upstream 690556 18155135 ~ 18157543 (-)
tbc1d10aa tbc1d10aa,LOC107657331,LOC107712481,LOC107550973,LOC107753095,LOC107703173,LOC107554420 other upstream 926084 18390663 ~ 18401938 (-)
G65033 NA other upstream 1095088 18559667 ~ 18560334 (-)

Expression


Co-expression Network