LOC122350746 (pqbp1,LOC107702814,LOC107683912,LOC107747222)


Basic Information

Item Value
gene id LOC122350746
gene name pqbp1,LOC107702814,LOC107683912,LOC107747222
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 19105053 ~ 19106870 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247438.1
TTGTCTACGTCATATTTCTGCGCCCGGGTCGCTTGTTTGTGTCTTTCAATGAAACGTTTACCACATAACTAAACTTTTGCACATTATAAAGaTGCCTCTGCCTCCAGCTTTACTTGCACGCCTCGCTAAAAGAGGGATCGTCAAACAGTCCGACCACGATGCTGAAGAGGAGATCATCGCTGAAGACTATGATGATAATAACGTTGATTATGAAGCTACCAGGATTGAAAACTTACCAACGAATTGGTACAAGGTTTTTGACCCCGCTTGtGGACTTCCTTACTACTGGAATGTAGAGACAGATTTAGTGTCCTGGTTGTCCCCTAATGATCCTGCCTCTGTCATCACCAAAGCTGCTAAGAAGCAGAAAGGTGAGTCTGGACATGACAAAGGGGACGGTCACTACGAGAAGGCAGAGAGAGACCGGGATCGAGACCGAGAGAGGGACAGGGAGCGCGACCGGGAGCGGGACCGAGACAGGGAGGATGGACGGGACAGAGATCGAGACCGGGAGAGGGATAGGGATCGAGACCGGGACAGAGACAGGGACCGCGACAGACGCATGCGGAGAGAGGACAGCGCACCGTATAGCAAATCAAAGAGAGGAGGACCAGGAGGAGGTCGAAAACAGCAGCAGGAGGAAATGGATCCCATGGATCCCAGCGCATACTCAGATGCTCCACGGGGCTCATGGTCCACTGGTCTCCCCAAACGCAACGAGGCCAAGACCGGGGCGGACACCACAGCAGCGGGACCCCTGTTCCAGCAGAGGCCGTACCCCAGTCCCGGAGCCGTCCTGAGAGCAAACGCTGAGAACACGAGACGCTTGGAAGAGgatgatgacgacgacgatGACGACTGAGCAgggagagtgtgtctgtgaagcCTTTATGATTTATAAAAGGCTCTTGTAATATCGTCTCTTACGTTTGGGACATAgattcatttgtaaatatacCATGTGTTGCgtgttatacattttataaacaattgCAATTTTGCTTACGGCGGTGACGTTCcctgcaaaataaacattttgtttaaatttc

Function

symbol description
pqbp1 Predicted to enable ribonucleoprotein complex binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within RNA splicing; innate immune response; and mRNA processing. Predicted to be located in nuclear speck. Predicted to be active in cytoplasm and nuclear body. Human ortholog(s) of this gene implicated in Renpenning syndrome. Orthologous to human PQBP1 (polyglutamine binding protein 1).

NR:

description
PREDICTED: polyglutamine-binding protein 1-like

GO: NA

KEGG:

id description
K12865 PQBP1, NPW38; polyglutamine-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247438.1 True 1049 mRNA 0.50 7 19105053 19106870

Neighbor

gene id symbol gene type direction distance location
LOC122350065 pold2,LOC107747204 coding upstream 1206 19100306 ~ 19103847 (+)
LOC122351071 slc7a4 coding upstream 14793 19081597 ~ 19090260 (+)
glt1d1 glt1d1,LOC107676618,LOC107659266 coding upstream 81761 18996469 ~ 19023292 (+)
si:dkeyp-14d3.1 si:dkeyp-14d3.1,LOC107676622,LOC107728438,LOC107659267,LOC107550917,LOC107753136 coding upstream 163376 18761647 ~ 18941677 (+)
si:ch211-158d24.4 NA coding upstream 375917 18725783 ~ 18729136 (+)
LOC122349950 adra2b,LOC107712484,LOC107657329,LOC107554404,LOC107550971,LOC107753091,LOC107703147 coding downstream 89580 19196450 ~ 19200081 (+)
slc7a4 slc7a4,LOC106579925 coding downstream 142851 19249721 ~ 19256112 (+)
sf3a1 sf3a1,LOC107550953,LOC107564451 coding downstream 155071 19261941 ~ 19267105 (+)
pold2 pold2,LOC107747204 coding downstream 160482 19267352 ~ 19270870 (+)
LOC122349946 LOC107747205,LOC107683889,LOC556872 coding downstream 177847 19284717 ~ 19346575 (+)
G64910 NA non-coding upstream 430709 18673967 ~ 18674344 (+)
G64889 NA non-coding upstream 486869 18616978 ~ 18618184 (+)
G64878 NA non-coding upstream 653689 18451042 ~ 18451364 (+)
G64862 NA non-coding upstream 713842 18390674 ~ 18391211 (+)
G64858 NA non-coding upstream 737943 18366570 ~ 18367110 (+)
G65108 NA non-coding downstream 76820 19183690 ~ 19347044 (+)
G65074 NA non-coding downstream 117699 19224569 ~ 19233384 (+)
G65119 NA non-coding downstream 298786 19405656 ~ 19482043 (+)
G65111 NA non-coding downstream 317149 19424019 ~ 19425722 (+)
G65267 NA non-coding downstream 450674 19557544 ~ 19558486 (+)
G65100 sf3a1,LOC107564451,LOC107550953 other upstream 8982 19094947 ~ 19096071 (+)
si:ch211-158d24.2 si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137 other upstream 382807 18695454 ~ 18722246 (+)
gpat2 gpat2,LOC107712449,LOC107550920,LOC107657318 other upstream 504569 18565699 ~ 18600484 (+)
adra2b adra2b,LOC107712484,LOC107657329,LOC107554404,LOC107753091,LOC107550971,LOC107703147 other upstream 640506 18460051 ~ 18464547 (+)
sb:cb288 NA other upstream 681248 18418948 ~ 18423805 (+)
G65105 LOC107747205,LOC107550912,LOC107683889,LOC108412149 other downstream 13074 19119944 ~ 19152305 (+)
LOC122350733 LOC107702875,LOC107722994,LOC107591954,LOC107573969,LOC107722996,LOC107691581 other downstream 93118 19199988 ~ 19201687 (+)
pqbp1 pqbp1,LOC107702814,LOC107683912,LOC107747222 other downstream 165222 19272092 ~ 19273770 (+)
rfk rfk,LOC107740987,LOC107723557 other downstream 923164 20030034 ~ 20033607 (+)
timm17b timm17b,LOC107722912 other downstream 1028249 20135119 ~ 20139364 (+)

Expression


Co-expression Network