rpl6 (LOC107699672,LOC107671003,LOC107559598)


Basic Information

Item Value
gene id rpl6
gene name LOC107699672,LOC107671003,LOC107559598
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2041554 ~ 2044605 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247449.1
TCACTCCTGTCTTTTCTCAGATGGCTGAGGGCGATAAGAAGAAAGAGGCCGATAAGAAGGAGGGCGATAAGAAGAAGAAGGCCCATAAGCATGGCAGCCGTAACCCCGTCCTGGTCCGGGGCATCGGCCGCTATTCCCGCTCGGCCATGTACGCTCGCCGGGCCATGTACAAGAGGAAGACTAAAGCCCCCGTGACGAAGgttgaaaagaaaataaaggagAAGGTTCCCACCACAGTCACCAAAACGGTTGGCGGAGACAAAAACGGAGGCACCCGTGTGGTCAAGCTGCGCAAGCTGCCCCGTTACTACCCCACAGAGGACGTGCCCCGTAAGCTGCGGAGCCACGGCATCAAGCCCTTCTCCCAGCACCGCAGGAAACTGCGCAAGTCCATCACCCCCGGGACCGTCCTGATCCTGCTGACCGGACGCCACCGCGGGAAGCGCGTGGTCTTCCTCAAGCAGCTGGGCACCGGTCTCCTCCTCGTCACCGGTCCCGTGGTTCTGAACCGGGTGCCTCTGCGCAGAGCTCACCAGAAGTTCTGCATCGCCACGAACACCAAAGTGGACATCTCTAGCATGAAGATCCCCAAAACGCTGACCGACGCCTACTtcaagaagaagaagctgaggaGACCCAAGCACCAGGAGGGAGAGATCTTCGACACGGAGAAGGAGAAGTACCAGCTGACGGAGCAGCGCAAGGCCGACCAGAAAGCGGTGGATGCTCAGCTGCTTCCTCTGATCAAGAAGGTTCCTCAGCTCACGGGATACCTGCGCACCTCCTTCTGCCTGTCTAACGGAGTCTATCCACACAAACTGGTTTTCTAAAACGCAAATAAAATCTGTCTCAAACCAGA

Function

NR:

description
PREDICTED: 60S ribosomal protein L6

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02934 RP-L6e, RPL6; large subunit ribosomal protein L6e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247449.1 True 859 mRNA 0.57 6 2041554 2044605

Neighbor

gene id symbol gene type direction distance location
vdac3 vdac3,LOC107754399,LOC107671013,LOC107560056 coding downstream 33454 1996550 ~ 2008100 (-)
plat plat,LOC107754398,LOC107657211,LOC107671043 coding downstream 76501 1947141 ~ 1965053 (-)
si:dkeyp-117b11.1 LOC107670989,LOC107657213,LOC107754414,LOC107722857,LOC107560032,LOC107559594,LOC107559561 coding downstream 104682 1927729 ~ 1936872 (-)
cltcl1 LOC107559593,LOC107670971,LOC108412499 coding downstream 114832 1880738 ~ 1926722 (-)
si:dkey-178e17.1 slc25a1,LOC107754397,LOC107670994,LOC107657208,LOC107722854,LOC108412497 coding downstream 162655 1857920 ~ 1878899 (-)
acaa2 acaa2,LOC107671002 coding upstream 1511 2046116 ~ 2055183 (-)
seta seta,LOC107699670,LOC107752982,LOC107754404,LOC107560061,LOC107671021 coding upstream 27284 2071889 ~ 2075596 (-)
zdhhc12a LOC107699641,LOC107560045 coding upstream 31542 2076147 ~ 2081503 (-)
slc25a25a slc25a25a,LOC107671014,LOC107754405,LOC107699669,LOC107560063,LOC108430373,LOC107559565 coding upstream 37436 2082041 ~ 2089293 (-)
LOC122350843 LOC107560046,LOC107699639 coding upstream 90603 2135208 ~ 2138080 (-)
G60487 dynll1,dyl1,LOC107559583,LOC100698873 non-coding downstream 1729 2037700 ~ 2039825 (-)
G60473 NA non-coding downstream 46809 1991335 ~ 1994745 (-)
G60471 NA non-coding downstream 53001 1987773 ~ 1988553 (-)
G60237 NA non-coding downstream 191621 1849488 ~ 1849933 (-)
G60204 NA non-coding downstream 261201 1726225 ~ 1780353 (-)
G60510 NA non-coding upstream 79453 2124058 ~ 2124341 (-)
G60519 NA non-coding upstream 122327 2166932 ~ 2168247 (-)
G60530 NA non-coding upstream 204737 2249342 ~ 2253090 (-)
G60532 NA non-coding upstream 237933 2282538 ~ 2282891 (-)
G60542 NA non-coding upstream 293954 2338559 ~ 2338844 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other downstream 219904 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other downstream 279005 1749062 ~ 1762549 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other downstream 434945 1561546 ~ 1606609 (-)
G60220 NA other downstream 460938 1576805 ~ 1580616 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other downstream 684601 1349171 ~ 1356953 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other upstream 14789 2059394 ~ 2061481 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other upstream 86764 2131369 ~ 2162003 (-)
G60564 pxnb other upstream 416326 2460931 ~ 2464371 (-)
bicdl1 bicdl1,LOC107553048 other upstream 476609 2521214 ~ 2552187 (-)
rad9b LOC105891618,LOC107713043,LOC107671006,LOC107552191,LOC107714555 other upstream 738015 2782620 ~ 2823826 (-)

Expression


Co-expression Network