ciao1 (ciao1,LOC107714582,LOC107671031,LOC107713036)


Basic Information

Item Value
gene id ciao1
gene name ciao1,LOC107714582,LOC107671031,LOC107713036
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2934045 ~ 2938344 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247469.1
AAAACCACTGAAGCACGAAACAGGAAGCGGGAAGCTGCTGATAAACAGAAGTCTTGAAAGCGGTGTGACATTCGAGCGAGGATAGCGTTGGATGTCATACACTCGCATGTCATATAATTAGAAGAATCGTACAGTTATAAGAGATGAAGGGCGCGCTGGAGCTGCTGCAGAGGGTGAGCGCGCACCCGGACGCGCGCTGCTGGTACGTCGCGTGGAACCCCGCGGGAACGCTGCTCGCGTCGTGCGGCGGGGACCGCGCCGTTAGAGTTTGGGGGAAAGAagGGGACAGTTGGGAATGTAAGTGTGTCCTGGCTGATGGACACCAGCGTACGGTCAGGAAGGTGGCCTGGTCTCCCTGCGGGAAATATCTGGCATCCGCCAGCTTTGATGCCACAACGTGCATCTGGAAGAAGACGAATGATGACTTTGAGTCCCTGACAGTGCTAGAAGGTCATGAGAACGAGGTCAAGTGTGTGGCCTGGGCTCCGTCTGGAAACTTGCTGGCCACCTGCAGCAGAGACAAAAGTGTTTGGATCTGGGAAGTGGACGAGGAGGATGAATATGAGTGTGTAAGTGTTGTGAATTCACACACGCAGGACGTGAAGCATGTGGTCTGGCACCCGACACAGGAGCTTCTCGCATCAGCCAGTTACGACAACaaagtgtgcatttataaaGAGGAGGATGATGACTGGGAGTGTAGAGCCACGCTGGAGGGTCACGAGTCCACCGTTTGGAGTCTGGCCTTTGACCCTGAAGGACGGAGATTGGCGTCGTGTAGCGATGACCGCACCGTGAAGATCTGGAAGGAGTCGACGCCTGGAGACGGTTCGTCAGATGAGTcctggaagtgtgtgtgtaccttGTCTGGATTCCATGGAAGAACGGTATATGATGTCGCATGGTGTCGTCTGACCGGTGCCCTGGCCACAGCGTGTGGCGACGATGGAGTTCGCGTCTTCAGAGAAGACCCCACTGCTGACCCAGAGCAGCCCATCTTCAACATGTCAGCTCACGTGCCCAAAGCCCACAGTCAGGACGTCAACTGTGTGTCCTGGAACCCGAAGGAGGCGGGCCTGCTGGCCACCTGCAGCGATAACGGAGAGTTTGCCGTCTGGAAGTACAACTCTGATTCCTGAGCTGGTGAATGGCACTCGAACACACAGAAGCACTGAATGAGTTTCAGCCGCTTAAGCGACATCGTGGGTCATAATGAGGAACGATGGCTGTTTTTATTCCGGCTGTGAGTGAGGAAACTGTGTGTTGGATTGAAAGACAGTACGCTCTTTAACTCGTGTCACTctcttttagtgtttttgatgGGTCAGTTGTAACTTATCAGAATCGTTTTAGGCGGTATGGATATATTTTAGCTTAAAATGTGGCTTAAAATACCTACAGTGCTTTAATGAAATAAAGCTTCTTGATGCTGAagataaaacaaacagttttttcGGGTTTATCACGTCCCAGAACCATCCGTTTAGATTGATGTTAAACGCATTAAAAGGATGTTTAGTGAACTCATCTATAATAGTTGTTTTAAAGTAACTTTCCATTTTTAATAGACCTTTGTCAGggtaaatttttactttttgacaGCAAAGCAAGCAAGATTGGGACAGAAGTACATTGCGTTCAGTGAATTGAACTGTTTTTTAACAACATGCTGATTCTGGGAGAGACGAGTAAACAAAAACTCTAGGACCTTTATGCGGTGCGTGCCACCATAAAGACTAAATCTGTCTTTCACAGCCTCATTTTCAactattaaatgaaatttgGCCATGATACAATCATGATAGATCttgaaaatgacataaaaaagactgtaaagttgttttaaatgcCCATTTCAGTGTAATTTCTACTTTTCTAAACTTCTTGTTATAAGTTACTGATGAAATATTGGATATTTCATatccagttttattttatattttataggcTCTACTTTATTAAATGTGGAATCTTGTGGA

Function

symbol description
ciao1 Predicted to be involved in iron-sulfur cluster assembly and protein maturation by iron-sulfur cluster transfer. Predicted to be part of CIA complex. Orthologous to human CIAO1 (cytosolic iron-sulfur assembly component 1).

NR:

description
PREDICTED: probable cytosolic iron-sulfur protein assembly protein CIAO1

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0097361 CIA complex cellular_component

KEGG:

id description
K24730 CIAO1, CIA1; cytosolic iron-sulfur protein assembly protein CIAO1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247469.1 True 1979 mRNA 0.47 7 2934045 2938344

Neighbor

gene id symbol gene type direction distance location
cdc45 cdc45,LOC107699634,LOC107670985 coding downstream 4110 2921713 ~ 2929935 (-)
zgc:63587 zgc:63587,LOC100700755,LOC101064433,LOC103397778 coding downstream 22184 2884344 ~ 2911861 (-)
sept5a sept5,sept5a,LOC107713038,LOC107671025,LOC107553041,LOC107699650,LOC107714585 coding downstream 50706 2869613 ~ 2883339 (-)
gp1bb LOC107713039,LOC107671026 coding downstream 65289 2865388 ~ 2868756 (-)
dhx37 dhx37 coding downstream 69117 2847938 ~ 2864928 (-)
igsf9b igsf9b,LOC107552192,LOC107671028,LOC107713033,LOC107699646,LOC107714578,LOC107553037 coding upstream 14389 2952733 ~ 2993383 (-)
tmem230b tmem230b,ct030,tmem230,LOC107713020,LOC107553029,LOC107670990,LOC103023473,LOC101077900,LOC106579885 coding upstream 55591 2993935 ~ 2998395 (-)
dpysl2a dpysl2a,dpysl2,LOC107713031,LOC107671020,LOC108430340,LOC108266046,LOC108277094,LOC108427246 coding upstream 104837 3043181 ~ 3067341 (-)
bnip3la bnip3la,LOC107552154,LOC107560275,LOC107699644,LOC107671016,LOC107714550 coding upstream 131157 3069501 ~ 3080742 (-)
ppp2r2aa ppp2r2aa,LOC107671018,LOC107713030,LOC107699615,LOC108430337,LOC106585558 coding upstream 143542 3081886 ~ 3091387 (-)
G60604 LOC107715152,LOC107553025,LOC107670977 non-coding downstream 321816 2601709 ~ 2612229 (-)
G60566 gcn1,LOC107552181,LOC107754417,LOC107553027,LOC107699625 non-coding downstream 360041 2506238 ~ 2574004 (-)
G60548 NA non-coding downstream 518544 2410413 ~ 2415501 (-)
G60542 NA non-coding downstream 595201 2338559 ~ 2338844 (-)
G60532 NA non-coding downstream 651154 2282538 ~ 2282891 (-)
G60638 tmem127,LOC107552193,LOC107713035,LOC107699648,LOC107671030,LOC107553020,LOC107714579 non-coding upstream 936 2939280 ~ 2940478 (-)
G60640 LOC107699617,LOC107714575,LOC107553039,LOC107670999,LOC107552195 non-coding upstream 5373 2943717 ~ 2944007 (-)
G60639 NA non-coding upstream 7066 2945410 ~ 2945931 (-)
G60719 NA non-coding upstream 622665 3561009 ~ 3561418 (-)
G60720 NA non-coding upstream 624248 3562592 ~ 3563073 (-)
rad9b LOC105891618,LOC107713043,LOC107671006,LOC107552191,LOC107714555 other downstream 110219 2782620 ~ 2823826 (-)
bicdl1 bicdl1,LOC107553048 other downstream 381858 2521214 ~ 2552187 (-)
G60564 pxnb other downstream 469674 2460931 ~ 2464371 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other downstream 772042 2131369 ~ 2162003 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other downstream 872564 2059394 ~ 2061481 (-)
G60679 adra1aa,LOC107553034,LOC107699645,LOC107713032,LOC107671010,LOC107552152 other upstream 94123 3032467 ~ 3035092 (-)
lhfpl4b lhfpl4b,LOC107584928,LOC107674308,LOC107727430,LOC107743140,LOC107701811,LOC107552174,LOC103032126,LOC108440531 other upstream 907109 3845453 ~ 3850590 (-)
zgc:113363 LOC107743117,LOC107701819,LOC107727412,LOC107584929 other upstream 1061987 4000331 ~ 4006806 (-)
G60967 LOC107674359,LOC107701814,LOC107727428,LOC107743108,LOC107552221 other upstream 1150380 4088724 ~ 4092157 (-)
G61023 NA other upstream 1362648 4300992 ~ 4307499 (-)

Expression


Co-expression Network