LOC122350794 (LOC107661539,LOC107704586,LOC107726870,LOC107568101,LOC107581163)


Basic Information

Item Value
gene id LOC122350794
gene name LOC107661539,LOC107704586,LOC107726870,LOC107568101,LOC107581163
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 572583 ~ 576178 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247522.1
gtgtgtgtgtgtcgagatGTCCGACTCTCTGCTGTCCGTGTGTGTGCTCTGTCTGCTGGCGCTGTCTGCGCTCTCGTCCGCCTGCTACATCCAGAACTGTCCTCGAGGAGGCAAGAGATCCCAGCCAGAGCCCCTCCGACAGtgtccGGCGTGCGGTCCGGGGAACCAGGGCCGCTGTCTGGGCCCCAGTATCTGCTGCGGGGCCGGTCTGGGCTGTCTCCTCGGCTCTCCAGAGACTCTCAGCTGTATGGAGGAGAACCTGCAGCCGGGCCCCTGTGAGACGGGCGGGGCGTCCTGCGGGGCCCGGGGCCGGTGTGCGGCTCCAGGCGTCTGCTGTGACTCGGAGAGCTGTGTTCTGGATCCAGACTGCTCTGAAGACGCTGGTTCTCGTCCGGATGAAGCCGGAGCGGCTCTGAAGGCTGTTTCTGGGGAAATGCTGCTGCGTTTGCTGGGTCTGGCCACTCGGAGACCGAGACCCTTCTGAAGCCGAGTCTCCTCCTCTCCGTCGCTCAGCTCTGtctgtaaatactgtatgtaGTAAACGGACGTCAAAGTCAA

Function

NR:

description
PREDICTED: vasotocin-neurophysin VT 1-like

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0043203 axon hillock cellular_component
GO:0005185 neurohypophyseal hormone activity molecular_function

KEGG:

id description
K05242 AVP; arginine vasopressin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247522.1 True 558 mRNA 0.63 3 572583 576178

Neighbor

gene id symbol gene type direction distance location
slc35d2 slc35d2,LOC107570982,LOC107570985 coding downstream 9369 558256 ~ 563214 (-)
fbxl17 fbxl17,LOC107704582,LOC107712428,LOC107661528,LOC107737136,LOC107570989 coding downstream 40195 362578 ~ 532388 (-)
efna5b efna5,efna5b,LOC107721028,LOC107709298,LOC107692204,LOC108265807,LOC107661535,LOC100702629 coding downstream 277313 202147 ~ 295270 (-)
LOC122350625 LOC107694826,LOC107583205,LOC107757045,LOC107747425,LOC107569528,LOC107675400 coding downstream 489555 7 ~ 83028 (-)
ubox5 NA coding upstream 4851 581029 ~ 586701 (-)
lzts3b lzts3,LOC107569677,LOC107712591,LOC107661533 coding upstream 12620 588798 ~ 601844 (-)
sprb spr,LOC107661521,LOC107569671,LOC107726883,LOC107712600,LOC107568099 coding upstream 31272 607450 ~ 610914 (-)
fabp1b.1 fabp1b.1,LOC107573351,LOC107726869,LOC107704576,LOC107579792,LOC107712467,LOC107661522,LOC103043953 coding upstream 54176 630354 ~ 631145 (-)
rnf165b rnf165b,rnf165,LOC107726876,LOC107569673,LOC107712483,LOC107704592 coding upstream 137188 713366 ~ 724970 (-)
G59739 NA non-coding downstream 20701 514767 ~ 551882 (-)
G59750 NA non-coding downstream 24672 545919 ~ 547911 (-)
G59688 NA non-coding downstream 335926 236074 ~ 236657 (-)
G59654 NA non-coding downstream 488730 83574 ~ 83853 (-)
G60016 NA non-coding upstream 39103 615281 ~ 617472 (-)
G60036 NA non-coding upstream 84257 660435 ~ 661098 (-)
G60003 NA non-coding upstream 147012 723190 ~ 725000 (-)
G60061 NA non-coding upstream 179446 755624 ~ 756643 (-)
G60079 NA non-coding upstream 240283 816461 ~ 820768 (-)
ccl27a NA other downstream 1610 565886 ~ 570973 (-)
LOC122349987 LOC107661519,LOC107712504,LOC107726877,LOC107704593,LOC107573347,LOC794598 other upstream 146967 723145 ~ 731844 (-)
csgalnact1b LOC107712620 other upstream 156615 732793 ~ 739372 (-)
G60098 NA other upstream 559223 1135401 ~ 1138152 (-)
commd10 commd10,LOC107728250,LOC107663591 other upstream 564520 1140698 ~ 1159286 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other upstream 772993 1349171 ~ 1356953 (-)

Expression


Co-expression Network