si:dkey-178e17.1 (slc25a1,LOC107754397,LOC107670994,LOC107657208,LOC107722854,LOC108412497)


Basic Information

Item Value
gene id si:dkey-178e17.1
gene name slc25a1,LOC107754397,LOC107670994,LOC107657208,LOC107722854,LOC108412497
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1857920 ~ 1878899 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247525.1
CGCCCCGTCTTCCGATCTGATCGCTGATTGGCTGAGCGCAGTCTCATGTCATCAGTCTATATTCGGCGGAGCGCGCTCCTCTCAGAAGAAACAGCGGCGCGCTCGCGAGGATCTGCCCGAAGATGAAGAGCAAAGCCAAACTCACTCATCCCGGGAAAGCCATCCTGGCAGGAGGCATCGCTGGAGGCATCGAAATCTGCATCACCTTTCCTACAGAGTATGTGAAGACTCAACTACAGTTAGATGAGAAAGCCAACCCGCCCAGATACAGAGGAATcaCGGACTGCGTGTCCCAGACGGTCCGTCATCACGGAGCGAAGGGTTTATATCGAGGCCTCAGCTCGCTGCTGTACGGATCCATCCCCAAATCTGCAGTCAGGTTCGGTGTGTTTGAGATCCTCAGTAATCAGATGAAGGACGAGGCTGGGAAGCTGGACAGCACTCGGGGGTTAGTGTGTGGTTTAGGGGCCGGTGTGATGGAGGCCGTCCTGGTCGTCTGTCCCATGGAGACCGTGAAgGTGAAATTCATCCACGATCAAACCTCGGCTAACCCCAAGTACAGAGGCTTCTTCCACGGCGTGCGGGAGATCGTCAGAACTCAAGGGATCCGAGGGACGTATCAAGGCCTGACGGCGACCGTCCTCAAGCAGGGCTCCAATCAGGCCATCCGCTTCTTCGTCATGACCTCTCTCAGGAACTGGTACAAGGGCGACGATCCCGACAAGTCCATCAACCCCGTGATCACAGGAGCGTTCGGAGCCGTCGCAGGAGCTGCCAGTGTGTTTGGAAACACGCCGCTGGACGTCATCAAGACCAGGATGCAGggttTGGAAGCTCATAAGTATAAAAACACTATGGATTGTGCCATGAAGATCATGAGACATGAAGGACCAgcggtGTTTTATAAAGGCACGGTCCCGAGGCTGGGTCGAGTGTGTTTGGACGTGGCCATCGTCTTCATCATCTACGAGGAGGTTGTGAAGCTCCTAAACAAAGTCTGGAAGACCGAGTGAAGAGAGACTCTGAGACGTCTCAAGGTTTATCCCCGCCATATTTGAAAATCACTTTAGTTCAcagatttagtttattaataaacgGATTGCTTAACCGATGGATTTAATAAAAGAGCCAACGAAAGccgtttctgccactgaataaaaaataagagTAAATGAATTTAACGTTTTAACCAGAGAAAGAGGGAATATTTATAGCTATATTTAGTTAACTACAGATCATTCCATTACACTGTGAGaaagatattttacatttctggcatttctaatttgtttgtttttttatctaatgtttttacatttgtaacaCCTTTTTTATGAAttgatttgaatatatttattttgccgttGCACGCGTGCCTTTGACCATCGAGCTCTGGAGTTAATTTTTCAGCACAGACAGGCGTTTCCGGAGCgtcttttctgtttctgtgcaATATCATCTGTATCACACACCACTGGAAGACAGAAatatatgtactgtaaacaCCTCTGAGCAGCATGCatctccctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagtatcTGTTGTGTGATGTGAAACAGTGTCATCTATATATTATTGGTCCAAATTTAAAGTGGCCACTAGAGGGCAGCATGAACTGAAGTATGGTTTTCTGCTTCAGTGTtgatctgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

symbol description
slc25a1 Enables citrate secondary active transmembrane transporter activity. Predicted to be involved in mitochondrial citrate transmembrane transport. Located in extracellular exosome and nucleus. Implicated in 2-hydroxyglutaric aciduria; combined D-2- and L-2-hydroxyglutaric aciduria; and congenital myasthenic syndrome.

NR:

description
PREDICTED: tricarboxylate transport protein, mitochondrial

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15100 SLC25A1, CTP; solute carrier family 25 (mitochondrial citrate transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247525.1 True 1780 mRNA 0.48 9 1857920 1878899

Neighbor

gene id symbol gene type direction distance location
si:dkey-178e17.3 LOC107754395,LOC107671045,LOC107657210,LOC107722861 coding downstream 5381 1837123 ~ 1852539 (-)
LOC122350661 NA coding downstream 80446 1771982 ~ 1777474 (-)
LOC122349997 NA coding downstream 143699 1710358 ~ 1714221 (-)
LOC122350659 NA coding downstream 211558 1627653 ~ 1646362 (-)
dtx1 dtx1,LOC107692206,LOC107671029 coding downstream 334456 1494505 ~ 1523464 (-)
cltcl1 LOC107559593,LOC107670971,LOC108412499 coding upstream 1839 1880738 ~ 1926722 (-)
si:dkeyp-117b11.1 LOC107670989,LOC107657213,LOC107754414,LOC107722857,LOC107560032,LOC107559594,LOC107559561 coding upstream 48830 1927729 ~ 1936872 (-)
plat plat,LOC107754398,LOC107657211,LOC107671043 coding upstream 68242 1947141 ~ 1965053 (-)
vdac3 vdac3,LOC107754399,LOC107671013,LOC107560056 coding upstream 117651 1996550 ~ 2008100 (-)
rpl6 LOC107699672,LOC107671003,LOC107559598 coding upstream 162655 2041554 ~ 2044605 (-)
G60237 NA non-coding downstream 7987 1849488 ~ 1849933 (-)
G60204 NA non-coding downstream 77567 1726225 ~ 1780353 (-)
LOC122349999 NA non-coding downstream 92377 1717401 ~ 1765543 (-)
G60207 NA non-coding downstream 163100 1674474 ~ 1694820 (-)
G60214 NA non-coding downstream 173880 1673516 ~ 1684040 (-)
G60471 NA non-coding upstream 108874 1987773 ~ 1988553 (-)
G60473 NA non-coding upstream 112436 1991335 ~ 1994745 (-)
G60487 dynll1,dyl1,LOC107559583,LOC100698873 non-coding upstream 158801 2037700 ~ 2039825 (-)
G60510 NA non-coding upstream 245159 2124058 ~ 2124341 (-)
G60519 NA non-coding upstream 288033 2166932 ~ 2168247 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other downstream 36270 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other downstream 95371 1749062 ~ 1762549 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other downstream 251311 1561546 ~ 1606609 (-)
G60220 NA other downstream 277304 1576805 ~ 1580616 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other downstream 500967 1349171 ~ 1356953 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other upstream 180495 2059394 ~ 2061481 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other upstream 252470 2131369 ~ 2162003 (-)
G60564 pxnb other upstream 582032 2460931 ~ 2464371 (-)
bicdl1 bicdl1,LOC107553048 other upstream 642315 2521214 ~ 2552187 (-)
rad9b LOC105891618,LOC107713043,LOC107671006,LOC107552191,LOC107714555 other upstream 903721 2782620 ~ 2823826 (-)

Expression


Co-expression Network