si:dkey-8e10.3 (si:dkey-8e10.3,LOC107743123,LOC107601742,LOC107674312,LOC107734510,LOC107653415,LOC107584926)


Basic Information

Item Value
gene id si:dkey-8e10.3
gene name si:dkey-8e10.3,LOC107743123,LOC107601742,LOC107674312,LOC107734510,LOC107653415,LOC107584926
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4853786 ~ 4860301 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247543.1
ACGCGTATGTGTTTCAGGTGTCTGATCACGAACTGCTCTATATCTAAAAAGCCAGTTTTAAAATTTCGAATTCTGTGTTTTCGCCCTAACTAGGCCGACTCAGTTTGCGTCTGAAcgtacataaacatatttggGGATATGTGATATGACGTCTCAGCTTTATGAAATATGTGAGTGAACATGTGTTTACGTGTGCTGCCCATGCGGGTGGAGTCAACACCACAGAAGTGTAACTCTTCCCAGAGTGGGTGCTTCATCCATATAAAGCCTTCCAGCAGCTCGAAAGCAGAGGAGTCCTCAATCGCCGGGCTCTGCATCGCCTTTGGCTGAGCGTCTGGGTGCCCCGATCCTTTGCACAGCTGCAGAGAGgacaAGCAGTGCAATGATTGAACTGGGCTCGGTGGAGGAAGGCAGCAGTCTGATAGACGAGCTGATGGAGCTGACATCTCAGAGCTTATGTCAGCTCGAGATTAAAGAGCACTTCAACATCATTAAAGAGATTGGCCGTGGCAAGTATGGTGTGCTGCTGGTCACTCACCGCTGCAAGGGGACTCCAATGGCTCTCAAAGTGCTGCCCAAGACTTCGACCAAGCTTCAGGGCTTCCTGAGAGAATACTGCATTTCCTTGCATCTGTCTTGTCACCCGTGCATCGTGGGATTGTTTGGGATCGCCTTCCAGTCCAACGAGCACTACGGATTCGCCCAGGAGCTTGTGACGGGACGGGACCTGTTCGCCATCATCCAGCCACGGGTGGGCATACCTGAATGCGCAGTGAAGCGCTGTGCCGTTCAGATCTCCTGTGCTCTAGAGTTCATCCACCAGCGTGGTCTGGTCCACCGCGACATCAAGCCCGAGAACGTGCTGCTGCTGGACACCCAGTGCCGCCGGGTCAAACTGGCCGACTTCGGCCTCACCCAGAGACGAGGAACCTTCATCCGCTTCATCTCGGGCACTCTGCCGTATATGGCTCCAGAGCTGTGCGCCATGGTTTTGGAGGAAGGTCAGAAGGAGGTGATAGCCCCTCCGCTCCGCGTGGAGTCCACTCTAGACACCTTCGCCTTTGCCGTGCTTCTTTTCTGCATCCTCACGGGCTTCTTCCCCTGGGAGCGCTGCAACGACAGCGACGATTTCTACGAGGAGTTTGCAGACTGGCGCAGATGCCCGAAGAAAAACCCCGTGCCGTCTCAGTGGAAAAGATTCACGCCCGTGTGCATGCAGATGTTCAGGAGGATGTTAGCGCTGGACCCTGGTGAGAGGTGCTCCGTGGGAGAGGTCAAAGGTTACGTGGGTAAGGACTGGGTGCGAGCGAAGGACGCCAACGGGTGGGTGGGAGAAAACGGGGAGGTCAGCACATCCACACCGAGTCCCTGCAGAAGCAGCCACAGTGATGAACAGTGATGGTGTTATATGACAAATGAGCAGAATATGGTGCCAAATGCAATGCAGAGAGCTGCTCGCTGGAAAGAATTTAGATCATTAGAGGTGttgatttcttaaaaagttATGAGGAAGGCACTCATTCGCGGGTCGGTATTATCggttaaatacaatttatactTCATTAACATCGATTGTGGCATGCtgtaattaacagaaaaatacatttgtaaatagttAAGTCAAGTAGTTAGTTAAGTCGCACTTACActtttaaaagatatatttagtTGTCTCTTTAAGAGTCATTTTTGATGGAGAAAAAGCATTGTGTATTGtacccagaaatgaaaaaaaaaacactcaatctgatcaaatgtataatttaaaatatttttttaatatatgaattacTAAAGAGCAGGTAAAGGAAAAAGTTTGAAGAAAATttgta

Function

symbol description
si:dkey-8e10.3 Predicted to enable MAP kinase kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human SBK2 (SH3 domain binding kinase family member 2).

NR:

description
serine/threonine-protein kinase SBK1-like

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247543.1 True 1832 mRNA 0.49 5 4853786 4860301

Neighbor

gene id symbol gene type direction distance location
ptpn18 LOC107743092,LOC107653414,LOC107601761,LOC107734536,LOC107674370,LOC107584895 coding downstream 164306 4674326 ~ 4689480 (-)
plxna3 plxna3,LOC107734520,LOC107653403,LOC107743094,LOC107674285,LOC106572068 coding downstream 198317 4510069 ~ 4655469 (-)
slc6a8 slc6a8,LOC107734513,LOC103036862,LOC107653404,LOC108441094 coding downstream 387729 4432982 ~ 4466057 (-)
zgc:86609 zgc:86609,LOC107653429,LOC107743102,LOC107601757,LOC107734524,LOC107674347,LOC108265646 coding downstream 538050 4311724 ~ 4315736 (-)
abt1 LOC107743137,LOC107601758,LOC107653431,LOC107727410 coding downstream 624246 4226724 ~ 4229540 (-)
slc66a1 pqlc2,LOC107734535,LOC107674372,LOC107725314,LOC107664981 coding upstream 493318 5353619 ~ 5361985 (-)
trim33 trim33,LOC107725313,LOC107734526,LOC107664979,LOC107570974 coding upstream 502425 5362726 ~ 5384419 (-)
bcas2 bcas2,LOC107664982,LOC107725297,LOC107734517,LOC107674303 coding upstream 525406 5385707 ~ 5390120 (-)
dennd2c dennd2c,LOC107665005,LOC107598967,LOC107734514,LOC107674357,LOC107725285,LOC107566809 coding upstream 530524 5390825 ~ 5410171 (-)
ampd1 ampd1,LOC107664993 coding upstream 550650 5410951 ~ 5423401 (-)
G61183 NA non-coding downstream 330 4852279 ~ 4853456 (-)
G61170 kcnd1,LOC106532789,LOC103362488 non-coding downstream 26847 4824014 ~ 4826939 (-)
G61135 NA non-coding downstream 113585 4738154 ~ 4740201 (-)
G61114 NA non-coding downstream 180786 4672173 ~ 4673000 (-)
G61083 NA non-coding downstream 379103 4474442 ~ 4474683 (-)
G61186 NA non-coding upstream 6680 4866981 ~ 4867186 (-)
G61188 NA non-coding upstream 16659 4876960 ~ 4885431 (-)
G61196 NA non-coding upstream 48539 4908840 ~ 4909470 (-)
G61209 NA non-coding upstream 73268 4933569 ~ 4933797 (-)
LOC122349981 NA non-coding upstream 89332 4949633 ~ 4955156 (-)
G61071 LOC107601747,LOC107653424,LOC107734537,LOC107674377,LOC107578221 other downstream 456712 4393213 ~ 4397074 (-)
G61023 NA other downstream 546287 4300992 ~ 4307499 (-)
G60967 LOC107674359,LOC107701814,LOC107727428,LOC107743108,LOC107552221 other downstream 761629 4088724 ~ 4092157 (-)
zgc:113363 LOC107743117,LOC107701819,LOC107727412,LOC107584929 other downstream 846980 4000331 ~ 4006806 (-)
lhfpl4b lhfpl4b,LOC107584928,LOC107674308,LOC107727430,LOC107743140,LOC107701811,LOC107552174,LOC103032126,LOC108440531 other downstream 1003196 3845453 ~ 3850590 (-)
LOC122350811 NA other upstream 326953 5187254 ~ 5187921 (-)
LOC122349940 fnbp1,fnbp1a,LOC107720911,LOC107675683,LOC107661630,LOC107757295,LOC107674371 other upstream 335451 5195752 ~ 5207522 (-)
nr1h5 nr1h5,LOC107653410,LOC107598964,LOC107725330,LOC107674374,LOC107734534,LOC107570978 other upstream 481093 5341394 ~ 5351279 (-)
pip5k1bb pip5k1bb,LOC107664977,LOC105901155,LOC107566804,LOC108412809,LOC108265367,LOC108234418 other upstream 615912 5476213 ~ 5510943 (-)
c8h9orf116 LOC107757294 other upstream 744871 5605172 ~ 5609572 (-)

Expression


Co-expression Network