LOC122350819 (LOC107552180,LOC107552179,LOC107670991,LOC107752989,LOC107754429,LOC107682543,LOC107682550)


Basic Information

Item Value
gene id LOC122350819
gene name LOC107552180,LOC107552179,LOC107670991,LOC107752989,LOC107754429,LOC107682543,LOC107682550
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2404210 ~ 2419714 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247553.1
TGGCTAGCATCGGACATTAAAGCATTAGCGTAATGTTCTCGTTCCGCTTTGTATCATGTTAGGTTTTGATCTTAAGTTTTGAAATGGCGAGTGGGAAAATACATTTGTACAAGTGAGCTGGGGTATGACGAAATCatgctttaaagaaacagtCTTCCGTGTTTCTGCCTATTAATCATCAAACATCGGCTATATATGGAACAccaaattacagatttttttaatcagGTCAAAAATGTCAAACGCAAATGGCACATCACTGTTGCGTCTGGGTGTCATACTGCTGATGGCAGGTGTCATCTCTCTGAGCGTTGTGTTTTTCTGGTTCTCGCTTTCAAACAACTGTCCATCTCCGGTTTTTAGACCTGACCGATATTCACAAATCATTGCTGACAAGAGCAGCAGGCCTCTTGCTAATAAGGCAGAAGGGAAACCTTTAGTTCTGTTATGGGTTTGGCCACAAGATTACAGGTTTGAATTCAGTGACTGCAAAAGgtttttcaatattgataattgCCAGCTGACGGATGATAGATCTCTGTACAACGATGCAGATGATGTCATCGTTTATCACAGAAACATCAGTAAAGATCTGTCCAACCTTCCTCCATCTCCTCGTCCTCCGTTCCAGAGGTGGATTTGGTTGCATTTGGAATCACCAACCAACACCAAAATCATACCGGGTCTGGAAAACCTGTTCAATCTCACTCTCAGCTACAGACAGGATGCTGATATTCCCGTACGGATGAGGTTGATCACCAGTAAGGAACCTAACAAGGATTTTGTGATTCCCAAAAAGGACAAACTGGTGTGCTGGATTGTAAGTAACAACAATTCCACAACTGGTGTTGACAGGAGGAACGATTTTTTCAAAGAATTCAGTAAATATATCCAAGTGACTTTGTTCGGAAAAGCTTATGCAAGGTTTCTGAATTATACTGACTACTATCCAACCCTGGCTAGCTGCAAATTTTACCTTGCTCTTGAGAACTCCGTCCACAAGGACTACTTTATGGAGAAGATAAACGGACCGCTTGCAGCAGGGACCGTCCCAGTGGTGTTGGGTCCTCCGAGAAGAAACTATGAAAACTATTATCCCGCCGAGTCCTTCATTCATGTCGATGATTTCCCAGATGAAAGGTCGCTAGCTATGTATCTGCTTCAGCTGGACAGGGATGAAAATGCATATCACCAGTACTTTAACTGGAGGAAACATCTCACTCCAAGTCCTCATTTAATATTACAGACACAAGAGTTTATTCTGGCTATCTGCACTGCCTGTGATCATGTAGCACGACACAGAGAATATAAAGAAGTTCATGATCTCTATGATTGGTACTTCAGATAAAGTCATCTCAGGTTTTCGTACATCATCAGTCACTGACTATaatgtttatgaaataaattgtaatttatattatacgTTACTTTTGAGATTAGACTTTGTAACTATTTTGGTGAAAGTGTTCAttaaatgaagtgaaaatgCTCATA
>XM_043247554.1
ccAACAGCAACTCGGGATTGGCTAGCATCGGACATTAAAGCATTAGCAAATCatgctttaaagaaacagtCTTCCGTGTTTCTGCCTATTAATCATCAAACATCGGCTATATATGGAACAccaaattacagatttttttaatcagGTCAAAAATGTCAAACGCAAATGGCACATCACTGTTGCGTCTGGGTGTCATACTGCTGATGGCAGGTGTCATCTCTCTGAGCGTTGTGTTTTTCTGGTTCTCGCTTTCAAACAACTGTCCATCTCCGGTTTTTAGACCTGACCGATATTCACAAATCATTGCTGACAAGAGCAGCAGGCCTCTTGCTAATAAGGCAGAAGGGAAACCTTTAGTTCTGTTATGGGTTTGGCCACAAGATTACAGGTTTGAATTCAGTGACTGCAAAAGgtttttcaatattgataattgCCAGCTGACGGATGATAGATCTCTGTACAACGATGCAGATGATGTCATCGTTTATCACAGAAACATCAGTAAAGATCTGTCCAACCTTCCTCCATCTCCTCGTCCTCCGTTCCAGAGGTGGATTTGGTTGCATTTGGAATCACCAACCAACACCAAAATCATACCGGGTCTGGAAAACCTGTTCAATCTCACTCTCAGCTACAGACAGGATGCTGATATTCCCGTACGGATGAGGTTGATCACCAGTAAGGAACCTAACAAGGATTTTGTGATTCCCAAAAAGGACAAACTGGTGTGCTGGATTGTAAGTAACAACAATTCCACAACTGGTGTTGACAGGAGGAACGATTTTTTCAAAGAATTCAGTAAATATATCCAAGTGACTTTGTTCGGAAAAGCTTATGCAAGGTTTCTGAATTATACTGACTACTATCCAACCCTGGCTAGCTGCAAATTTTACCTTGCTCTTGAGAACTCCGTCCACAAGGACTACTTTATGGAGAAGATAAACGGACCGCTTGCAGCAGGGACCGTCCCAGTGGTGTTGGGTCCTCCGAGAAGAAACTATGAAAACTATTATCCCGCCGAGTCCTTCATTCATGTCGATGATTTCCCAGATGAAAGGTCGCTAGCTATGTATCTGCTTCAGCTGGACAGGGATGAAAATGCATATCACCAGTACTTTAACTGGAGGAAACATCTCACTCCAAGTCCTCATTTAATATTACAGACACAAGAGTTTATTCTGGCTATCTGCACTGCCTGTGATCATGTAGCACGACACAGAGAATATAAAGAAGTTCATGATCTCTATGATTGGTACTTCAGATAAAGTCATCTCAGGTTTTCGTACATCATCAGTCACTGACTATaatgtttatgaaataaattgtaatttatattatacgTTACTTTTGAGATTAGACTTTGTAACTATTTTGGTGAAAGTGTTCAttaaatgaagtgaaaatgCTCATA
>XM_043247555.1
CTGACTTCGGAGTAGAAATGTAAACCACACAACAGATTTTTGGCGGCAgttgtaagaaaaaaagtgaccaggAAATCatgctttaaagaaacagtCTTCCGTGTTTCTGCCTATTAATCATCAAACATCGGCTATATATGGAACAccaaattacagatttttttaatcagGTCAAAAATGTCAAACGCAAATGGCACATCACTGTTGCGTCTGGGTGTCATACTGCTGATGGCAGGTGTCATCTCTCTGAGCGTTGTGTTTTTCTGGTTCTCGCTTTCAAACAACTGTCCATCTCCGGTTTTTAGACCTGACCGATATTCACAAATCATTGCTGACAAGAGCAGCAGGCCTCTTGCTAATAAGGCAGAAGGGAAACCTTTAGTTCTGTTATGGGTTTGGCCACAAGATTACAGGTTTGAATTCAGTGACTGCAAAAGgtttttcaatattgataattgCCAGCTGACGGATGATAGATCTCTGTACAACGATGCAGATGATGTCATCGTTTATCACAGAAACATCAGTAAAGATCTGTCCAACCTTCCTCCATCTCCTCGTCCTCCGTTCCAGAGGTGGATTTGGTTGCATTTGGAATCACCAACCAACACCAAAATCATACCGGGTCTGGAAAACCTGTTCAATCTCACTCTCAGCTACAGACAGGATGCTGATATTCCCGTACGGATGAGGTTGATCACCAGTAAGGAACCTAACAAGGATTTTGTGATTCCCAAAAAGGACAAACTGGTGTGCTGGATTGTAAGTAACAACAATTCCACAACTGGTGTTGACAGGAGGAACGATTTTTTCAAAGAATTCAGTAAATATATCCAAGTGACTTTGTTCGGAAAAGCTTATGCAAGGTTTCTGAATTATACTGACTACTATCCAACCCTGGCTAGCTGCAAATTTTACCTTGCTCTTGAGAACTCCGTCCACAAGGACTACTTTATGGAGAAGATAAACGGACCGCTTGCAGCAGGGACCGTCCCAGTGGTGTTGGGTCCTCCGAGAAGAAACTATGAAAACTATTATCCCGCCGAGTCCTTCATTCATGTCGATGATTTCCCAGATGAAAGGTCGCTAGCTATGTATCTGCTTCAGCTGGACAGGGATGAAAATGCATATCACCAGTACTTTAACTGGAGGAAACATCTCACTCCAAGTCCTCATTTAATATTACAGACACAAGAGTTTATTCTGGCTATCTGCACTGCCTGTGATCATGTAGCACGACACAGAGAATATAAAGAAGTTCATGATCTCTATGATTGGTACTTCAGATAAAGTCATCTCAGGTTTTCGTACATCATCAGTCACTGACTATaatgtttatgaaataaattgtaatttatattatacgTTACTTTTGAGATTAGACTTTGTAACTATTTTGGTGAAAGTGTTCAttaaatgaagtgaaaatgCTCATA

Function

NR:

description
PREDICTED: alpha-(1,3)-fucosyltransferase 9-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008417 fucosyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247553.1 True 1494 mRNA 0.40 3 2404210 2406439
XM_043247554.1 False 1411 mRNA 0.41 3 2404210 2406457
XM_043247555.1 False 1436 mRNA 0.41 3 2404210 2419714

Neighbor

gene id symbol gene type direction distance location
LOC122350843 LOC107560046,LOC107699639 coding downstream 266130 2135208 ~ 2138080 (-)
slc25a25a slc25a25a,LOC107671014,LOC107754405,LOC107699669,LOC107560063,LOC108430373,LOC107559565 coding downstream 314917 2082041 ~ 2089293 (-)
zdhhc12a LOC107699641,LOC107560045 coding downstream 322707 2076147 ~ 2081503 (-)
seta seta,LOC107699670,LOC107752982,LOC107754404,LOC107560061,LOC107671021 coding downstream 328614 2071889 ~ 2075596 (-)
acaa2 acaa2,LOC107671002 coding downstream 349027 2046116 ~ 2055183 (-)
LOC122350818 LOC107552179,LOC107552180,LOC107670991,LOC107754429,LOC107752989,LOC107552177,LOC107699637,LOC107670988 coding upstream 617 2420331 ~ 2422173 (-)
mtmr3 mtmr3,LOC107754413,LOC107671008,LOC107699659 coding upstream 193131 2612845 ~ 2645929 (-)
cux2b cux2,cux2b,LOC107671009,LOC107553024,LOC107715151 coding upstream 231256 2650970 ~ 2816039 (-)
si:ch211-166a6.5 LOC107552189,LOC107713040,LOC107553042,LOC107699620,LOC107670979,LOC107714553,LOC107671022 coding upstream 406762 2826476 ~ 2844716 (-)
dhx37 dhx37 coding upstream 428224 2847938 ~ 2864928 (-)
G60542 NA non-coding downstream 65366 2338559 ~ 2338844 (-)
G60532 NA non-coding downstream 121319 2282538 ~ 2282891 (-)
G60530 NA non-coding downstream 151120 2249342 ~ 2253090 (-)
G60519 NA non-coding downstream 235963 2166932 ~ 2168247 (-)
G60510 NA non-coding downstream 279869 2124058 ~ 2124341 (-)
G60566 gcn1,LOC107552181,LOC107754417,LOC107553027,LOC107699625 non-coding upstream 86524 2506238 ~ 2574004 (-)
G60604 LOC107715152,LOC107553025,LOC107670977 non-coding upstream 181995 2601709 ~ 2612229 (-)
G60638 tmem127,LOC107552193,LOC107713035,LOC107699648,LOC107671030,LOC107553020,LOC107714579 non-coding upstream 519566 2939280 ~ 2940478 (-)
G60640 LOC107699617,LOC107714575,LOC107553039,LOC107670999,LOC107552195 non-coding upstream 524003 2943717 ~ 2944007 (-)
G60639 NA non-coding upstream 525696 2945410 ~ 2945931 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other downstream 242207 2131369 ~ 2162003 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other downstream 342729 2059394 ~ 2061481 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other downstream 582560 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other downstream 641661 1749062 ~ 1762549 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other downstream 797601 1561546 ~ 1606609 (-)
G60564 pxnb other upstream 41217 2460931 ~ 2464371 (-)
bicdl1 bicdl1,LOC107553048 other upstream 101500 2521214 ~ 2552187 (-)
rad9b LOC105891618,LOC107713043,LOC107671006,LOC107552191,LOC107714555 other upstream 362906 2782620 ~ 2823826 (-)
G60679 adra1aa,LOC107553034,LOC107699645,LOC107713032,LOC107671010,LOC107552152 other upstream 612753 3032467 ~ 3035092 (-)
lhfpl4b lhfpl4b,LOC107584928,LOC107674308,LOC107727430,LOC107743140,LOC107701811,LOC107552174,LOC103032126,LOC108440531 other upstream 1425739 3845453 ~ 3850590 (-)

Expression


Co-expression Network