mrpl40 (LOC107753002,LOC107559600,LOC107699643,LOC107560058,LOC107754402,LOC107671004)


Basic Information

Item Value
gene id mrpl40
gene name LOC107753002,LOC107559600,LOC107699643,LOC107560058,LOC107754402,LOC107671004
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2055331 ~ 2058725 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247566.1
TTTTACTCTGAAGTAaccgaagaagaagaagatccACATTGGTCCGCCGGAAGGAGTAAAACGCTTCTTAGTTGTTCAACGTCGATGCGGGTAAAGTCGACATTTCTGTAAATCATGGCGGGGATTCTGTGCCGTACTGCAAGCCGAATCATATCGAGTCAAGTATCGTGTAGTACCTCTGTGGTTGCTGTCAGACACAGTCACTGGTTCACATCAATGCTTTCCCTGAAAACCTCTATGCCACTGAGAGCAGAacccaagaagaagaagaaggtggaCCCTCGTCGTGAGATGCTGATGAAGGAGCGTCTGAAGAAAAAGCTCAAGAAGCTGGAGAAAGTTCCGGCAGAACTGATTCCTATTGAAGACTTTATTATCCCGGCTAAGTGCTTTGATGAGACCagGATCCGTGACGCTCCTAAGCTGTCTTTTGAGGAGAGCGAACGCAGAGCCCTTCTGCTGAAGGACTGGTCCAGATACAAGTACGCCCAGCACCAGACGGAGATGGACGCCATCAAAGAGGCGCTGGAGGCCCAGAGACAAGCTCTGGATGAGCTGAAGCTGGAGTCAGAAGAGCTTTATAAAGCGGCGCTCAGCCCAGATATGGATATGTTCCCTATCCGGCACGAAGGGCCCAGCTACACCCCGGCCATCACGAACTACGAGGCTCCAGAGGGCAAATACAATGACGTTACTCGGGTTTACACGCAGTGAGCTCGAGCGTGACGCCCGCGTTTTCTGCTCTGATGAGAACAAACCGAATGAACTGTATTACCATGGTGTAGATTATCGTTCTTCATGTGTTAGTCATcattaaatcatgtttaatattttaa
>XM_043247567.1
TTTTTACTCTGAAGTAaccgaagaagaagaagatccACATTGGTCCGCCGGAAGGAGTAAAACGCTTCTTAGTTGTTCAACGTCGATGCGGGTAAAGTCGACATTTCTGTAAATCATGGCGGGGATTCTGTGCCGTACTGCAAGCCGAATCATATCGAGTCAAGTATCGTGTACCTCTGTGGTTGCTGTCAGACACAGTCACTGGTTCACATCAATGCTTTCCCTGAAAACCTCTATGCCACTGAGAGCAGAacccaagaagaagaagaaggtggaCCCTCGTCGTGAGATGCTGATGAAGGAGCGTCTGAAGAAAAAGCTCAAGAAGCTGGAGAAAGTTCCGGCAGAACTGATTCCTATTGAAGACTTTATTATCCCGGCTAAGTGCTTTGATGAGACCagGATCCGTGACGCTCCTAAGCTGTCTTTTGAGGAGAGCGAACGCAGAGCCCTTCTGCTGAAGGACTGGTCCAGATACAAGTACGCCCAGCACCAGACGGAGATGGACGCCATCAAAGAGGCGCTGGAGGCCCAGAGACAAGCTCTGGATGAGCTGAAGCTGGAGTCAGAAGAGCTTTATAAAGCGGCGCTCAGCCCAGATATGGATATGTTCCCTATCCGGCACGAAGGGCCCAGCTACACCCCGGCCATCACGAACTACGAGGCTCCAGAGGGCAAATACAATGACGTTACTCGGGTTTACACGCAGTGAGCTCGAGCGTGACGCCCGCGTTTTCTGCTCTGATGAGAACAAACCGAATGAACTGTATTACCATGGTGTAGATTATCGTTCTTCATGTGTTAGTCATcattaaatcatgtttaatattttaa

Function

NR:

description
39S ribosomal protein L40, mitochondrial

GO: NA

KEGG:

id description
K17421 MRPL40; large subunit ribosomal protein L40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247566.1 True 836 mRNA 0.49 4 2055332 2058725
XM_043247567.1 False 834 mRNA 0.49 4 2055331 2058725

Neighbor

gene id symbol gene type direction distance location
enkd1 si:ch211-220d9.3,enkd1,LOC107754420,LOC107699630,LOC107657207,LOC107670972 coding upstream 40647 2006084 ~ 2014684 (+)
ikbkb ikbkb,LOC107671012,LOC107722850,LOC107754415 coding upstream 59472 1966583 ~ 1995859 (+)
LOC122350512 NA coding upstream 108382 1936761 ~ 1946949 (+)
snap29 snap29,LOC107722859,LOC107560055,LOC107726963 coding upstream 227920 1822636 ~ 1827411 (+)
serpind1 serpind1,LOC107671000,LOC107738496,LOC107559590,LOC107722856,LOC107698014,LOC107560052 coding upstream 247929 1802695 ~ 1807402 (+)
gle1 gle1,LOC107671035,LOC107699671,LOC107754403 coding downstream 2816 2061541 ~ 2069288 (+)
si:ch211-51h9.7 NA coding downstream 11093 2069818 ~ 2071669 (+)
naif1 naif1,LOC107559603,LOC107753004 coding downstream 37434 2096159 ~ 2103906 (+)
fam102aa fam102aa,LOC107671017,LOC107699668,LOC107752986,LOC107754406,LOC105891604,LOC108430372 coding downstream 47665 2106390 ~ 2133931 (+)
sh3glb2a sh3glb2a,LOC107671032,LOC107754407 coding downstream 80505 2139230 ~ 2152391 (+)
LOC122350140 NA non-coding upstream 28003 2024562 ~ 2027328 (+)
G60288 NA non-coding upstream 52328 2000761 ~ 2003003 (+)
G60281 vdac3,LOC107671013,LOC107559564 non-coding upstream 55863 1967120 ~ 1999468 (+)
G60269 NA non-coding upstream 102205 1952793 ~ 1953126 (+)
G60265 NA non-coding upstream 105035 1947148 ~ 1950296 (+)
G60296 NA non-coding downstream 94746 2153471 ~ 2156394 (+)
G60297 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048 non-coding downstream 100589 2159314 ~ 2162044 (+)
G60323 NA non-coding downstream 104582 2163307 ~ 2165242 (+)
G60328 NA non-coding downstream 134232 2192957 ~ 2204310 (+)
G60335 NA non-coding downstream 285211 2343936 ~ 2344169 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 15495 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 19351 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 35297 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 136960 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 836527 1210815 ~ 1218804 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 1789889 3848614 ~ 3850557 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 1866136 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 1970578 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 3045845 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 3168227 5226952 ~ 5229608 (+)

Expression


Co-expression Network