LOC122350834 (LOC107756820,LOC107691590,LOC107591940)


Basic Information

Item Value
gene id LOC122350834
gene name LOC107756820,LOC107691590,LOC107591940
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20352522 ~ 20356527 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247571.1
tttttaatttgatgatttttttttttttggacttgcATACATAGGCAGGGAGTATAGCTCTACACAGAAAAATAAGGGGCCAgaattgtacctttttttttgagGTACGGCAGCTTGTCCCTAGAGCATTACCCTTACAAGGACATATTTGTACCTTTTTACCTGCAATATATGTGCATTTTAGTACCTTAAAGGTATACATTACTACTctaaggtactaatatgtacctgttggggtaaaaaaaaaaggtactgcTCCAGTAACAAGCTGTTGTACcccaaaacaacatttacaatatttaaacacaGCACTTTACCACAGTCATCTATGTGCTGTTAGGAAAGAGTGAAGGGTTTGTTTGAAatccatttttataaatgtagttttttagTGTTtcgtttttattgtttgttttttttttcttttcaaaacagccAAACTACAGTTTGATATTAATTGgaatgattataaaaaaatatatatatatatatataaaaagttatttgtttttgctaatGAACTCTTCAAGTCTTGCGACATGGGTGCATGtttgatgataatgataaattCTGATATGATATTTAATGAGTTTGACAAACCTTTATATCTTAAGTCCATCTTCGTTGGGTATTGCAGCATCTAAGTATTtcagtttatgtatttttttcacttttcacattATACTACATAGCGTGGATGTATAGTTATACCTCTGAGAAAAGAGCTCTACCTCCATGTCAGCCAGTTTGGTTTTATCAACTCAGTTATACAAGTTACATCAATACATACAATTCTAAAATCAATCAGTTATTTGCATGAAAAGGATATTACAGAGTTTGTTCGCCTGCTGCTTGGAAAGTGTTTGAACTTGAATTTGAATCTGAATCACACGTTTCTTTTGGGAGAAATAACTGTTAAGGTCTTTGCTCTTTACTTTACATGACCAATGCTGTTGcgtattttgcaataaatattattggAGTAACGTTGATGGGAGTTTTAATTCTATTAAAGGCAGTTTTATAGTGTTTAAGTGAAATCGTTTTCACAGCCCGCAAACGTGTTTAGATGATCCAAAAAGGTTTGATAAGAAATCATAGTGGCTTTGGTTTGTTAAAGATCCGGAAACGGGAATCAGGTGAAGTCGAAAGAGAAAGTCTCGTCCTGGTGTGAGGATGTCGAAAGATGAGCGCGACAGCTGTATATTATTTGTCATAATTTGAAACGTCGAACATCAGGTAAGTGTTCTATAAACATTGTGTTCGTTTATGGAATGGAACgttctaaaaataaagaataaacgTTTGTTTACGTTCTGAAGGAACTTGTTTGCTTCTCGCGGTTAACATGCTCCCGCGCTTGTTTATTTACCTTAATGAAATAATTCCATCAAAGGCGGATTAAACAATCTATTTCTGGTTATCAAACAAAATTTAATCGGTTTTGACTTtcattcagatattttttttaagacgtGTGCCAGGAGAATCAAATGAACAGGTCTGACGAGACGTTTGACATGTTTGTACAGACGCTATCCCTTAAAAGCGCACAATTGCAAATGTACAGTAGTGCACTACACACGTTATTTACCGACATTTTTTCTACGTATGTGCAGAGTGTTACAGGGTGGTTTCGCAATGCCCCTGTCGCTGGAGGACAAGGTGGAGAGGCTTTTGAAGGGAGAGGGGCTGGAGGTGACCGAGCTTCACTTCGCTCCCGAACCGAGGCAGCCGGTCACACGCAAAAACACAAGCTTTGCTGTGTGCGCGGTCATCTTCAACTCTAGGaacGAGGTGTTGATGATCCAAGAGGCAAAGACGGTGTGTTTTGGTTCATGGTACCTCCCTGCAGGTCGTATGGAAGATGGTGAAAGTATCGAGGAGACCCTaaagagagaggtgagagaggaGGCGGGAATAGACTGTCAGCCAATCACGCTGCTGCAGATTCAAGAAAAAGGGCCAAGCTGGATCCGCTTTGCTTTTCTAGCAGAGAAAACAGGTGGCTCTCTGAAGACGCCAGAAGAAGCAGACGCCGAATCGCTGCAAGCTCAGTGGTACGATCGCGAATCTCTGCCTAAGAATATCCGTAAACGTGACATTCTCACCCTCATTGATGCTGGGTTAAGGTATCGCCAAAGCCCCTGGTTCCCGTGCTTACAGCCTGTTGGCTTCCCCTGTGACGTCGTCTGCCAAAGGCTTCTTCTCGCTTTCGCCTCCAGCGACGCCAACCTCGAAAACGGCGATGAAGAGCGCATATGGCTGCTGCTGACCGACGACTCCCAACTTCCCGTCGCGGCCTCAGTCAAAGCACAAACTCTCACGCTCACCGCAAAAGCGCTGGTGAAGAGCTGCATGCCCTCCATTCACGAGCAGCTGAGCGTGAACACCTGTGGGATTCTGGGAGTGCAGCACAACGGGACAGCTCCCGGACAAACCGATGGGGTCTGTTTAAACACCCTGGTGCTGCTGGAGTAtaatgaggaagaggaggagattGGTCTCAGCCTTCCACCCAAACCAGAGAGCGCTGCTTTCAGATGGCACGAAGTGACCAATCAGAGCCTGAGGACTGAGATACTGCGGAAGATTCAGGAAGGCTCTGTCCTGCCTGTTCAGAGCACATGAATGGGAACCGAAGAGATGTCCCTGTCATCATTATTGCTGGTTTACACCAAGTACGATAACTGTAACGTTAACAATATCGTTTCAAAAACGAGTTAAAGTCTAAATCTAAAAGAATATAcctttttgtcaataaaagatTATGAATTTAAACTTCTGATTGGATGCTCTTCTGCTCCGCTCTTCATAGGAAACCATTCAAATAGTGTTTTTGATACAGCTAACGTCATCAGTTTCGTGTTTTCTACGCACTTCAAGTTTGAGGAGTGACAAATGACGGTCACgaaagaaatgttaaatgatgtgcttttttgaaaaacattttaatgggtTTAACACTAGATTATCGGCACAGAATATACACTGGTTTGACTAGATTCGCTGGAAACTGGAGATTCTAAGCATCGTTTAGGAAAATTACGTAAATGTAATCACTTTTCCAGCtcatgaatgataaaaacattggcagccaatcagaatccatcctggtGAACAGACTTTTGCTTGTTGCTGTAAGGCACATGGTTTGCATCACGTTGGCCTCTATTTTTGGTGTTATTAACTGCGGTgtccatttttaatgttttaacagaGTCAAGAAAtgtttacatgaataaataaaccacTCATATTTGCA
>XM_043247572.1
tttaatttgatgatttttttttttttggacttgcATACATAGGCAGGGAGTATAGCTCTACACAGAAAAATAAGGGGCCAgaattgtacctttttttttgagGTACGGCAGCTTGTCCCTAGAGCATTACCCTTACAAGGACATATTTGTACCTTTTTACCTGCAATATATGTGCATTTTAGTACCTTAAAGGTATACATTACTACTctaaggtactaatatgtacctgttggggtaaaaaaaaaaggtactgcTCCAGTAACAAGCTGTTGTACcccaaaacaacatttacaatatttaaacacaGCACTTTACCACAGTCATCTATGTGCTGTTAGGAAAGAGTGAAGGGTTTGTTTGAAatccatttttataaatgtagttttttagTGTTtcgtttttattgtttgttttttttttcttttcaaaacagccAAACTACAGTTTGATATTAATTGgaatgattataaaaaaatatatatatatatatataaaaagttatttgtttttgctaatGAACTCTTCAAGTCTTGCGACATGGGTGCATGtttgatgataatgataaattCTGATATGATATTTAATGAGTTTGACAAACCTTTATATCTTAAGTCCATCTTCGTTGGGTATTGCAGCATCTAAGTATTtcagtttatgtatttttttcacttttcacattATACTACATAGCGTGGATGTATAGTTATACCTCTGAGAAAAGAGCTCTACCTCCATGTCAGCCAGTTTGGTTTTATCAACTCAGTTATACAAGTTACATCAATACATACAATTCTAAAATCAATCAGTTATTTGCATGAAAAGGATATTACAGAGTTTGTTCGCCTGCTGCTTGGAAAGTGTTTGAACTTGAATTTGAATCTGAATCACACGTTTCTTTTGGGAGAAATAACTGTTAAGGTCTTTGCTCTTTACTTTACATGACCAATGCTGTTGcgtattttgcaataaatattattggAGTAACGTTGATGGGAGTTTTAATTCTATTAAAGGCAGTTTTATAGTGTTTAAGTGAAATCGTTTTCACAGCCCGCAAACGTGTTTAGATGATCCAAAAAGGTTTGATAAGAAATCATAGTGGCTTTGGTTTGTTAAAGATCCGGAAACGGGAATCAGGTGAAGTCGAAAGAGAAAGTCTCGTCCTGGTGTGAGGATGTCGAAAGATGAGCGCGACAGCTGTATATTATTTGTCATAATTTGAAACGTCGAACATCAGAGTGTTACAGGGTGGTTTCGCAATGCCCCTGTCGCTGGAGGACAAGGTGGAGAGGCTTTTGAAGGGAGAGGGGCTGGAGGTGACCGAGCTTCACTTCGCTCCCGAACCGAGGCAGCCGGTCACACGCAAAAACACAAGCTTTGCTGTGTGCGCGGTCATCTTCAACTCTAGGaacGAGGTGTTGATGATCCAAGAGGCAAAGACGGTGTGTTTTGGTTCATGGTACCTCCCTGCAGGTCGTATGGAAGATGGTGAAAGTATCGAGGAGACCCTaaagagagaggtgagagaggaGGCGGGAATAGACTGTCAGCCAATCACGCTGCTGCAGATTCAAGAAAAAGGGCCAAGCTGGATCCGCTTTGCTTTTCTAGCAGAGAAAACAGGTGGCTCTCTGAAGACGCCAGAAGAAGCAGACGCCGAATCGCTGCAAGCTCAGTGGTACGATCGCGAATCTCTGCCTAAGAATATCCGTAAACGTGACATTCTCACCCTCATTGATGCTGGGTTAAGGTATCGCCAAAGCCCCTGGTTCCCGTGCTTACAGCCTGTTGGCTTCCCCTGTGACGTCGTCTGCCAAAGGCTTCTTCTCGCTTTCGCCTCCAGCGACGCCAACCTCGAAAACGGCGATGAAGAGCGCATATGGCTGCTGCTGACCGACGACTCCCAACTTCCCGTCGCGGCCTCAGTCAAAGCACAAACTCTCACGCTCACCGCAAAAGCGCTGGTGAAGAGCTGCATGCCCTCCATTCACGAGCAGCTGAGCGTGAACACCTGTGGGATTCTGGGAGTGCAGCACAACGGGACAGCTCCCGGACAAACCGATGGGGTCTGTTTAAACACCCTGGTGCTGCTGGAGTAtaatgaggaagaggaggagattGGTCTCAGCCTTCCACCCAAACCAGAGAGCGCTGCTTTCAGATGGCACGAAGTGACCAATCAGAGCCTGAGGACTGAGATACTGCGGAAGATTCAGGAAGGCTCTGTCCTGCCTGTTCAGAGCACATGAATGGGAACCGAAGAGATGTCCCTGTCATCATTATTGCTGGTTTACACCAAGTACGATAACTGTAACGTTAACAATATCGTTTCAAAAACGAGTTAAAGTCTAAATCTAAAAGAATATAcctttttgtcaataaaagatTATGAATTTAAACTTCTGATTGGATGCTCTTCTGCTCCGCTCTTCATAGGAAACCATTCAAATAGTGTTTTTGATACAGCTAACGTCATCAGTTTCGTGTTTTCTACGCACTTCAAGTTTGAGGAGTGACAAATGACGGTCACgaaagaaatgttaaatgatgtgcttttttgaaaaacattttaatgggtTTAACACTAGATTATCGGCACAGAATATACACTGGTTTGACTAGATTCGCTGGAAACTGGAGATTCTAAGCATCGTTTAGGAAAATTACGTAAATGTAATCACTTTTCCAGCtcatgaatgataaaaacattggcagccaatcagaatccatcctggtGAACAGACTTTTGCTTGTTGCTGTAAGGCACATGGTTTGCATCACGTTGGCCTCTATTTTTGGTGTTATTAACTGCGGTgtccatttttaatgttttaacagaGTCAAGAAAtgtttacatgaataaataaaccacTCATATTTGCA

Function

NR:

description
PREDICTED: 8-oxo-dGDP phosphatase NUDT18-like

GO:

id name namespace
GO:0046057 dADP catabolic process biological_process
GO:0046067 dGDP catabolic process biological_process
GO:0046712 GDP catabolic process biological_process
GO:0044715 8-oxo-dGDP phosphatase activity molecular_function
GO:0044716 8-oxo-GDP phosphatase activity molecular_function
GO:0044717 8-hydroxy-dADP phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K17817 NUDT18, MTH3; 8-oxo-dGDP phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247571.1 True 3265 mRNA 0.41 3 20352522 20356527
XM_043247572.1 False 2883 mRNA 0.41 4 20352522 20356525

Neighbor

gene id symbol gene type direction distance location
lsm1 lsm1,LOC107571959,LOC107548281 coding downstream 83106 20266843 ~ 20269416 (-)
grk5l grk5l,LOC107756834,LOC107691567,LOC107548280,LOC107702864 coding downstream 86599 20222516 ~ 20265923 (-)
star star,LOC107691570,LOC107571960,LOC107548259,LOC107702817 coding downstream 131643 20216745 ~ 20220879 (-)
elmod3 LOC107756833,LOC107702863,LOC107722433,LOC107571955,LOC107691569 coding downstream 136044 20199656 ~ 20216478 (-)
aebp1b LOC107571966,LOC107756828,LOC107691571,LOC107722622,LOC107702862,LOC107548278 coding downstream 162314 20173175 ~ 20190208 (-)
LOC122350835 LOC107691561,LOC107756843,LOC107566957 coding upstream 123 20356650 ~ 20360170 (-)
mak16 mak16,LOC107591933,LOC107756848,LOC107566970,LOC107702820,LOC107722986,LOC107691589 coding upstream 82735 20439262 ~ 20441908 (-)
LOC122351134 NA coding upstream 96504 20453031 ~ 20453131 (-)
ywhabb ywhabb,LOC107702878,LOC107573968,LOC107756849,LOC107691552,LOC103023259 coding upstream 98103 20454630 ~ 20459028 (-)
LOC122350494 eif2s2,if2b,LOC107566961,LOC107756850,LOC107739644,LOC107691551,LOC107573966 coding upstream 103602 20460129 ~ 20464209 (-)
LOC122350542 rsph14,LOC107756838,LOC107691565,LOC107702819,LOC107723028 non-coding downstream 67682 20281582 ~ 20284840 (-)
G65613 LOC107756819,LOC107723069,LOC107578151,LOC107571958 non-coding downstream 186150 20166056 ~ 20166372 (-)
LOC122350956 NA non-coding downstream 212322 20136603 ~ 20140200 (-)
G65596 adamts13,LOC107725310,LOC107548275,LOC107702807 non-coding downstream 248522 20103337 ~ 20104000 (-)
LOC122349935 NA non-coding downstream 607872 19708097 ~ 19744650 (-)
G65682 NA non-coding upstream 108024 20464551 ~ 20464756 (-)
LOC122349883 NA non-coding upstream 135322 20491849 ~ 20505973 (-)
G65696 nr6a1a,nr6a1,LOC107721088,LOC107698081 non-coding upstream 203104 20559631 ~ 20559971 (-)
G65697 NA non-coding upstream 210631 20567158 ~ 20570293 (-)
G65704 NA non-coding upstream 254035 20610562 ~ 20610923 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other downstream 218177 20118007 ~ 20134345 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other downstream 919231 19428738 ~ 19433291 (-)
LOC122351133 NA other downstream 1150145 19202277 ~ 19202377 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other downstream 1304553 19023713 ~ 19047969 (-)
G65033 NA other downstream 1792188 18559667 ~ 18560334 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other upstream 58538 20415065 ~ 20421296 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other upstream 362413 20718940 ~ 20723155 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other upstream 658466 21014993 ~ 21025831 (-)
G66086 si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 other upstream 1414941 21771468 ~ 21776620 (-)
G66090 NA other upstream 1428177 21784704 ~ 22254189 (-)

Expression


Co-expression Network