LOC122350835 (LOC107691561,LOC107756843,LOC107566957)


Basic Information

Item Value
gene id LOC122350835
gene name LOC107691561,LOC107756843,LOC107566957
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20356650 ~ 20360170 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247573.1
ttagtttttctaaagAGTGGACgtgaatttgattttaataattatctCGGATGAACTGGATGCAATTGAATAATGTTTCACGGCATGTGTATTTTTCCTCGCTAACTTTTACATGTAAACACCGGGTTAGGTTTAGTTCTTCATAGGTAATTATGATAGCGTGGTCAAGACAGATTGCTGTGATGGACGTGTTTTGTAAGATTATAATTCCAAATATGTTTATAATCCCAACAGCAGAGGTtctgcatttgtttgtgaattctTTACGCGGATTAATacagaaatagaaaacaatattgttttgtgAAACTTTATAAGGTGCTTAAGTGGCTCCAGGCTTTGGTTCTTAAGTGTGATGATGCCTAAAGCTGCCGACTCTGTATCTGAAACGGACGCTATTTAATAATCCTATTCATTATGTTGTATACCCGAAGCCAGGCAGCTCCGGCGTGGATACAATGGCAGAAATGTTGGAGGAAAACCTGGAGAAGATTTTGAAGGGTGAGGGACTGGAGGTGAGAGAGTTTGATTCAGTTCCTGAACAAGTGAAGCCTGTCACACTGAGGAAAAGCGTGTGTTACATTGTCGGAGCGGTCATCTTCAACTCAAAGGACGAGGTGTTAATGGTTCAGGAGGCAAAGAGAGAGTGTTATGGCAGATGGTATCTCCCTGCGGGTCGCATGGAGGAGCGTGAAAGCATTCTAGAGGCGCTGCAGAGGGAGGTCAAAGAGGAGGCGGGAATAGACTGCCAGCCAATCACACTGCTGCTGGTTCAAGAGCAAGGTCCAAAGTGGCTTCGATTCATCTTCCTTGCTGAGGAGACAGGAGGCTCTCTGAAGACGACGGCAGAAGCAGATTCTGAATCTCTTCAAGCTCAGTGGTGGGACTGCGAGTCCCCCCTTCCTCTTCGTGGACGTGACATCCTGCCTCTCATCGACGCTGGACTGAAATACCGCCGAAATCCCTGGTTCCCTATTTTACAACCCGTCGACTTCCCTTGTCAGGTCATCTGCCAAAGACTCTTCCTCGCGTTCATCTCCAGCAGCGCTAACACAGACCGCCTGTGGCTGCTGCTGAGCCACAACGATGCCGCTTCTCAGCCCGGTCCTCCCATAGCGGTGTCAGGCAACGCGTTCGACACGATCCCGCGAGCCGCGCACAGACTGGTGAAGGAATGCGTGCCTTCCTCATCCGTGCAAGTTCATACGTGTGGCATTCTGGGAGTGCAGCACAATGGGAGAATTCCAGGGAAAACGGACGGGATCTGCTTTAACACGCTCGTGTTGTTGGAAAATTCGGAGGACGGAGCTGAAATCAGCAGCCCGCCGTCATTGGAGGGTGCCGCTTACAGATGGCACGAGGTGACCAATCAGAGCCTGAAGGCAAAGATAATGCAGAGGATTAAAGAAGAGTCCGTTCTGCCTGTTCATAGTCTGGACTGATGCTCTGCCACGCTAGCAGAGGACCAGCAGCAGAAGTGAACCTGCATCCTTCACGTGAGCACCAAAGCTCTGTGTGTCTAAAGCATGAGATTTCAGATGTGTGCTTCACTCAACTTTCCCTCCTTTGACGTCTCTTCTCCATTCCAGTGAAATGTAACCAAGTATTAATTCTAATATGCATATCCACTGTAATTATAATAGGTTCCTTAACAATACAGGCACTTCAAGTCCTGAATAGGTGACCCTGTGTAAAAAGTAAGTGCACTTAATTACTGTTTGCACACTTGTATGTACTTCAAATATGATATTACTTAAAGATGTAATATTAGTGAAATAAGGACACTTAATTGTGCTTTGAGACACATTTTTGATGTGTTGACTAACATACTTTGAGTgtaggtttatttattattacatttaaattttaaaatatattttaaatgtactaaaatgaaACTTTATTACACATGTGCAATTACGAATGCATGgcattaaaaagtatattgtcaaatacactacaaaaaaatatataggctatCACTGGGACGGCATCTTATTTACTCCTGTTTTTTTTGACCCCTTATTTTTGCACCTTTTGAAAGGGCACcacccagtgacagcttttgtacctatttttttctgagagtgttgTAAATTTGGCGGTatactttatttgaaaaataatataat
>XM_043247576.1
AGGAACTAAACGAAACTAAACGTAACGCAGTTTGACTCGGCCCCTCAGATAAGCGTCACGTGTTATCGCGAGAGTTCCAGCAACCGAcgctttaaatatatttctcttttctttcgtGACGGGAGGCGTTAGCCAGGCAGCTCCGGCGTGGATACAATGGCAGAAATGTTGGAGGAAAACCTGGAGAAGATTTTGAAGGGTGAGGGACTGGAGGTGAGAGAGTTTGATTCAGTTCCTGAACAAGTGAAGCCTGTCACACTGAGGAAAAGCGTGTGTTACATTGTCGGAGCGGTCATCTTCAACTCAAAGGACGAGGTGTTAATGGTTCAGGAGGCAAAGAGAGAGTGTTATGGCAGATGGTATCTCCCTGCGGGTCGCATGGAGGAGCGTGAAAGCATTCTAGAGGCGCTGCAGAGGGAGGTCAAAGAGGAGGCGGGAATAGACTGCCAGCCAATCACACTGCTGCTGGTTCAAGAGCAAGGTCCAAAGTGGCTTCGATTCATCTTCCTTGCTGAGGAGACAGGAGGCTCTCTGAAGACGACGGCAGAAGCAGATTCTGAATCTCTTCAAGCTCAGTGGTGGGACTGCGAGTCCCCCCTTCCTCTTCGTGGACGTGACATCCTGCCTCTCATCGACGCTGGACTGAAATACCGCCGAAATCCCTGGTTCCCTATTTTACAACCCGTCGACTTCCCTTGTCAGGTCATCTGCCAAAGACTCTTCCTCGCGTTCATCTCCAGCAGCGCTAACACAGACCGCCTGTGGCTGCTGCTGAGCCACAACGATGCCGCTTCTCAGCCCGGTCCTCCCATAGCGGTGTCAGGCAACGCGTTCGACACGATCCCGCGAGCCGCGCACAGACTGGTGAAGGAATGCGTGCCTTCCTCATCCGTGCAAGTTCATACGTGTGGCATTCTGGGAGTGCAGCACAATGGGAGAATTCCAGGGAAAACGGACGGGATCTGCTTTAACACGCTCGTGTTGTTGGAAAATTCGGAGGACGGAGCTGAAATCAGCAGCCCGCCGTCATTGGAGGGTGCCGCTTACAGATGGCACGAGGTGACCAATCAGAGCCTGAAGGCAAAGATAATGCAGAGGATTAAAGAAGAGTCCGTTCTGCCTGTTCATAGTCTGGACTGATGCTCTGCCACGCTAGCAGAGGACCAGCAGCAGAAGTGAACCTGCATCCTTCACGTGAGCACCAAAGCTCTGTGTGTCTAAAGCATGAGATTTCAGATGTGTGCTTCACTCAACTTTCCCTCCTTTGACGTCTCTTCTCCATTCCAGTGAAATGTAACCAAGTATTAATTCTAATATGCATATCCACTGTAATTATAATAGGTTCCTTAACAATACAGGCACTTCAAGTCCTGAATAGGTGACCCTGTGTAAAAAGTAAGTGCACTTAATTACTGTTTGCACACTTGTATGTACTTCAAATATGATATTACTTAAAGATGTAATATTAGTGAAATAAGGACACTTAATTGTGCTTTGAGACACATTTTTGATGTGTTGACTAACATACTTTGAGTgtaggtttatttattattacatttaaattttaaaatatattttaaatgtactaaaatgaaACTTTATTACACATGTGCAATTACGAATGCATGgcattaaaaagtatattgtcaaatacactacaaaaaaatatataggctatCACTGGGACGGCATCTTATTTACTCCTGTTTTTTTTGACCCCTTATTTTTGCACCTTTTGAAAGGGCACcacccagtgacagcttttgtacctatttttttctgagagtgttgTAAATTTGGCGGTatactttatttgaaaaataatataat

Function

NR:

description
PREDICTED: 8-oxo-dGDP phosphatase NUDT18-like isoform X1

GO:

id name namespace
GO:0046057 dADP catabolic process biological_process
GO:0046067 dGDP catabolic process biological_process
GO:0046712 GDP catabolic process biological_process
GO:0044715 8-oxo-dGDP phosphatase activity molecular_function
GO:0044716 8-oxo-GDP phosphatase activity molecular_function
GO:0044717 8-hydroxy-dADP phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K17817 NUDT18, MTH3; 8-oxo-dGDP phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247573.1 True 2132 mRNA 0.44 3 20356650 20360026
XM_043247576.1 False 1830 mRNA 0.46 4 20356650 20360170

Neighbor

gene id symbol gene type direction distance location
LOC122350834 LOC107756820,LOC107691590,LOC107591940 coding downstream 123 20352522 ~ 20356527 (-)
lsm1 lsm1,LOC107571959,LOC107548281 coding downstream 87234 20266843 ~ 20269416 (-)
grk5l grk5l,LOC107756834,LOC107691567,LOC107548280,LOC107702864 coding downstream 90727 20222516 ~ 20265923 (-)
star star,LOC107691570,LOC107571960,LOC107548259,LOC107702817 coding downstream 135771 20216745 ~ 20220879 (-)
elmod3 LOC107756833,LOC107702863,LOC107722433,LOC107571955,LOC107691569 coding downstream 140172 20199656 ~ 20216478 (-)
mak16 mak16,LOC107591933,LOC107756848,LOC107566970,LOC107702820,LOC107722986,LOC107691589 coding upstream 79092 20439262 ~ 20441908 (-)
LOC122351134 NA coding upstream 92861 20453031 ~ 20453131 (-)
ywhabb ywhabb,LOC107702878,LOC107573968,LOC107756849,LOC107691552,LOC103023259 coding upstream 94460 20454630 ~ 20459028 (-)
LOC122350494 eif2s2,if2b,LOC107566961,LOC107756850,LOC107739644,LOC107691551,LOC107573966 coding upstream 99959 20460129 ~ 20464209 (-)
chmp4bb chmp4bb,LOC107756851,LOC107691553,LOC107702881,LOC107566963,LOC107573971 coding upstream 105728 20465898 ~ 20468905 (-)
LOC122350542 rsph14,LOC107756838,LOC107691565,LOC107702819,LOC107723028 non-coding downstream 71810 20281582 ~ 20284840 (-)
G65613 LOC107756819,LOC107723069,LOC107578151,LOC107571958 non-coding downstream 190278 20166056 ~ 20166372 (-)
LOC122350956 NA non-coding downstream 216450 20136603 ~ 20140200 (-)
G65596 adamts13,LOC107725310,LOC107548275,LOC107702807 non-coding downstream 252650 20103337 ~ 20104000 (-)
LOC122349935 NA non-coding downstream 612000 19708097 ~ 19744650 (-)
G65682 NA non-coding upstream 104381 20464551 ~ 20464756 (-)
LOC122349883 NA non-coding upstream 131679 20491849 ~ 20505973 (-)
G65696 nr6a1a,nr6a1,LOC107721088,LOC107698081 non-coding upstream 199461 20559631 ~ 20559971 (-)
G65697 NA non-coding upstream 206988 20567158 ~ 20570293 (-)
G65704 NA non-coding upstream 250392 20610562 ~ 20610923 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other downstream 222305 20118007 ~ 20134345 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other downstream 923359 19428738 ~ 19433291 (-)
LOC122351133 NA other downstream 1154273 19202277 ~ 19202377 (-)
LOC122350102 LOC107717958,LOC107676625,LOC107550916,LOC107682323,LOC107659265 other downstream 1308681 19023713 ~ 19047969 (-)
G65033 NA other downstream 1796316 18559667 ~ 18560334 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other upstream 54895 20415065 ~ 20421296 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other upstream 358770 20718940 ~ 20723155 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other upstream 654823 21014993 ~ 21025831 (-)
G66086 si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 other upstream 1411298 21771468 ~ 21776620 (-)
G66090 NA other upstream 1424534 21784704 ~ 22254189 (-)

Expression


Co-expression Network