gle1 (gle1,LOC107671035,LOC107699671,LOC107754403)


Basic Information

Item Value
gene id gle1
gene name gle1,LOC107671035,LOC107699671,LOC107754403
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2061541 ~ 2069288 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247582.1
ttttattttgtagtcaGGCGGAAGTGGCGGTGAGCGCCGGCGGCTCGTTTAGGCTGCTGCGGTGTCTGTCCTGTTAGTTGGAATTAAAGTGCGGggtaaaaacactttaatgtcGCCAAAATGCCTTCTGAAAGCCTACGGTGGGAAACCTTAGAAGCCCTGAAAAACTCTCCGAAGGGGAAACTCAATTACAGCCCAGACTGGCTGGAAAAAGGGGAGGATGTTCTGGCGCGCTGTATCGAGGTGTCCAGTCTGTCTCCTCTCTCGGGACAGATTCTGAAGAGACTGAGCCCCCGTCCGCTGCTCAAGACCCGCTCTCTGTCTTCATGTGTTCGCGATACGAGTCCCGAGATTTCAGAAGATCTTGCCGCTGGTGCTTCGTTTTCCCAGACGAGTCCCAGACAGATTTCATCGCCCGCCTCTCCGCCTCCGGTCTCCATCCACGCCGAGGAGCATGAGCAGAAAGCGGAAGAAATAAAGCCGGATTGTGTCGGGAGTCCCGCGGCGAGCTCACCTCCAGCGATCTCCATCCTTTCGCCCCGAGCCACGCAGCTGGCCGGCTGCATCCGCATGTGTGAGCAGAAACACAAGGCCAAAGCGAAGGTGGAGCTGAGTCTCAGACAGGAGCAGCAGGAGCGGCTGGTGGCCACCGCCGCCATCTGTGAGTCTGAGCAGCTCAAACGCTACGAGGAGTTGATGGAGCTCAAACAGAGACAGGAGATCCAGAGTATGAGGGACATGATGGAGAAAGAGACGCAGGAGAGTCTCGGCCGTCAGGAGAAGCTGCGAGAGGAACACCGGCACAGAATGAAAATCCTGAACCTGCGCCTGCGGGAGGCGGAGCAGCAGCGTCTGCGGGAGGCGGAGCTTGAGCGCCAGCGGCAGGTGGATGGCAGAGAGCGGCACAGAGCGATCAACGCCATTCAGGAGGAAGTGCTACAGCTCAACCAGCTCCTACAGCCCCGCCCCTCCGCACACGCCGACCCCGCCCTAGACCACACCCCCTACATCACCCGCGGCAACCAGCTCTGCTCGCAGGTGTCAGATGTGGTGCCGGCCGCTGCAGACGGTCAGTTTCCCAGCGTGGAGGATTTGACCGTGGCGGAGCGAGCGCTACAGGAAATGAGGTCGCTGGTCAGAAACCTGCAGGACGAGGTGGCCCGGGCTGccgagaggaagaggaaggagcaggaggaagaggaggagaagaagaagaggcaCGAGGAGCTAAAAGCCCAGCAAGAGGAGCAAAAGAAATCCGCGGCGCGGTCCGTGAAAGAGAAAGCCAAGAAAGAGGGTCTTCAGACAGGAGCGGACGACAGCACTTTAAAGTGGTACAACACGCTGCAGGATGCGGCCGATCGGTGCGCCCAGGCTTTCGACGAGCTCGGCAAAGCTAAAGACACACAGacgaaaaaattaaaaatggagcTGCAAAAGGCCGCCACCACACCTGTGAGCCAGATCGCAAACATCTCAGGCGCGCCGCTGAAGGAGGCCTTTGAGAAGATCGATAAGCTTCTGTCCAGCCGTCCGGTGACGTCCGCTGGAAAGACGGTCTCTACGTCCCAGCATCCTCAGGGGCTGGAGTTTGTCAGTTATAAGCTAGCTGAAAAGTTTGTGAAACAAGGAGAAGAGGAGGTGGCGTCCAATCATTCGGCGGCGTTCCCCATCGCCGCTGTGGCGTCAGGCATTTGGGAACTGCATCCTAAAATTGGAGAGCTTATACTCGCCCACCTCCACAAGAAGTGCCCTTATGCCGTCCCTCACTACCCTCCCATGGAGAGTGGCACGTCTGTGGAGGATTACCAGAAGATTCTGGGATACCGTGTGGAAGACTCTAAAGTGGAAGGACAGGACAGCTTTCTGAAGAGAATGTCGGGAATGATCCGTCTCTATGCAGCAATAATCCAGATGAGATGGCCTTATACCGGCAAACAAGGGCCTCATCCTCACGGCTTGAACCACGGCTGGCGCTGGCTGGCACAGATCCTCAACATGGAGCCGCTCGCTGACATCACAGCGACCATTCTCTTCGACTTCCTGGAGgTCTGCGGAAATGCCTTAATGAAACAATATCGAGGGCAGTTTTGGAAACTCGTACTGCTTATTTATGAAGAATACTTCCCAAGGATCGAAGCGGTCACCAGCACCGGTCAGATGGGCTCTGTAACCAGACTCAAACAGTTTCTGGAGACGTCTCTGCGAACGAAGCAGATTCCCGTTCCCAGGAGCGAGCTTGGCTCCGCCTTCTTCAGATCCTGATTGGTTGGAATGCCGCCGACGAGCGTTTTAATGCTCTCTACAAAAACGAAGCATAAGCCGACGCCGTTTTATGGAcgcatgatgttttttttctcatctgtaGGATTCAATCGAGCATCATGACGTCTTTTTGTTCATCTGAGCAtgtgagaaatgttttatttggttttttttaatacacgcTGCTGTCTTAATCTATCCATCCGATctcaaatatatgaaaatgaccAAAGTTTATTATCCGTTTTAGGCAAATGAGTGTTAACAGGAATTAGGTTACCCCGAATTTATCATTGAGGATGAAATGTAATCTCAAGTGCGTACGCTAAGAggaaatgtactgtatgttgaTGCGGATATTTATGACTTTATATGACGTAAGGATTAAAGCAAGTACACGGTG

Function

symbol description
gle1 Predicted to enable inositol hexakisphosphate binding activity; phospholipid binding activity; and translation initiation factor binding activity. Involved in Schwann cell development and regulation of cilium beat frequency involved in ciliary motility. Acts upstream of or within epithelial cilium movement involved in determination of left/right asymmetry; neurogenesis; and poly(A)+ mRNA export from nucleus. Predicted to be located in nucleus. Predicted to be part of nuclear pore cytoplasmic filaments. Predicted to be active in cytoplasm. Is expressed in several structures, including head; intestine; pectoral fin; pectoral fin bud; and trunk musculature. Used to study lethal congenital contracture syndrome 1. Human ortholog(s) of this gene implicated in lethal congenital contracture syndrome 1. Orthologous to human GLE1 (GLE1 RNA export mediator).

NR:

description
nucleoporin GLE1 isoform X3

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016973 poly(A)+ mRNA export from nucleus biological_process
GO:0005643 nuclear pore cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18723 GLE1; nucleoporin GLE1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247582.1 True 2668 mRNA 0.54 16 2061541 2069288

Neighbor

gene id symbol gene type direction distance location
mrpl40 LOC107753002,LOC107559600,LOC107699643,LOC107560058,LOC107754402,LOC107671004 coding upstream 2816 2055331 ~ 2058725 (+)
enkd1 si:ch211-220d9.3,enkd1,LOC107754420,LOC107699630,LOC107657207,LOC107670972 coding upstream 46857 2006084 ~ 2014684 (+)
ikbkb ikbkb,LOC107671012,LOC107722850,LOC107754415 coding upstream 65682 1966583 ~ 1995859 (+)
LOC122350512 NA coding upstream 114592 1936761 ~ 1946949 (+)
snap29 snap29,LOC107722859,LOC107560055,LOC107726963 coding upstream 234130 1822636 ~ 1827411 (+)
si:ch211-51h9.7 NA coding downstream 530 2069818 ~ 2071669 (+)
naif1 naif1,LOC107559603,LOC107753004 coding downstream 26871 2096159 ~ 2103906 (+)
fam102aa fam102aa,LOC107671017,LOC107699668,LOC107752986,LOC107754406,LOC105891604,LOC108430372 coding downstream 37102 2106390 ~ 2133931 (+)
sh3glb2a sh3glb2a,LOC107671032,LOC107754407 coding downstream 69942 2139230 ~ 2152391 (+)
crb2b LOC107754408,LOC107699666,LOC107560064,LOC107568009 coding downstream 101223 2170511 ~ 2203097 (+)
LOC122350140 NA non-coding upstream 34213 2024562 ~ 2027328 (+)
G60288 NA non-coding upstream 58538 2000761 ~ 2003003 (+)
G60281 vdac3,LOC107671013,LOC107559564 non-coding upstream 62073 1967120 ~ 1999468 (+)
G60269 NA non-coding upstream 108415 1952793 ~ 1953126 (+)
G60265 NA non-coding upstream 111245 1947148 ~ 1950296 (+)
G60296 NA non-coding downstream 84183 2153471 ~ 2156394 (+)
G60297 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048 non-coding downstream 90026 2159314 ~ 2162044 (+)
G60323 NA non-coding downstream 94019 2163307 ~ 2165242 (+)
G60328 NA non-coding downstream 123669 2192957 ~ 2204310 (+)
G60335 NA non-coding downstream 274648 2343936 ~ 2344169 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 21705 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 25561 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 41507 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 143170 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 842737 1210815 ~ 1218804 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 1779326 3848614 ~ 3850557 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 1855573 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 1960015 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 3035282 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 3157664 5226952 ~ 5229608 (+)

Expression


Co-expression Network