Item | Value |
---|---|
gene id | tcf7l1b |
gene name | tcf7l1,tcf7l1b,LOC107721095,LOC107556226,LOC107747791,LOC107563849,LOC107698102,LOC108265410,LOC106585616 |
gene type | coding |
species | tiger barb (Puntius tetrazona) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_056706.1 |
NCBI id | CM032075.1 |
chromosome length | 24299999 |
location | 20771693 ~ 20822052 (-) |
genome version | ASM1883169v1_2021_tiger_barb_Genome |
symbol | description |
---|---|
tcf7l1b | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including cell proliferation in dorsal spinal cord; endothelial cell fate specification; and nervous system development. Predicted to be located in nucleus. Predicted to be part of beta-catenin-TCF complex. Is expressed in nervous system; optic vesicle; and posterior neural tube. Orthologous to human TCF7L1 (transcription factor 7 like 1). |
tcf7l1 | Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in canonical Wnt signaling pathway and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including axial mesoderm morphogenesis; regulation of transcription, DNA-templated; and somatic stem cell population maintenance. Located in cytosol and nucleoplasm. |
description |
---|
PREDICTED: transcription factor 7-like 1 isoform X1 |
id | name | namespace |
---|---|---|
GO:0060070 | canonical Wnt signaling pathway | biological_process |
GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
GO:0035284 | brain segmentation | biological_process |
GO:0009880 | embryonic pattern specification | biological_process |
GO:0021903 | rostrocaudal neural tube patterning | biological_process |
GO:0010456 | cell proliferation in dorsal spinal cord | biological_process |
GO:0008284 | positive regulation of cell population proliferation | biological_process |
GO:0030901 | midbrain development | biological_process |
GO:0030902 | hindbrain development | biological_process |
GO:0048699 | generation of neurons | biological_process |
GO:0021513 | spinal cord dorsal/ventral patterning | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0005667 | transcription regulator complex | cellular_component |
GO:0043565 | sequence-specific DNA binding | molecular_function |
GO:0003682 | chromatin binding | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
GO:0008013 | beta-catenin binding | molecular_function |
id | description |
---|---|
K04490 | TCF7L1; transcription factor 7-like 1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_043247598.1 | True | 2744 | mRNA | 0.52 | 12 | 20771693 | 20822051 |
XM_043247599.1 | False | 1832 | mRNA | 0.51 | 11 | 20771693 | 20821267 |
XM_043247600.1 | False | 2028 | mRNA | 0.56 | 13 | 20772439 | 20822052 |
XM_043247601.1 | False | 2021 | mRNA | 0.56 | 13 | 20772442 | 20822052 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
tgoln2 | NA | coding | downstream | 9206 | 20757808 ~ 20762487 (-) |
stambpb | stambpb,LOC107714511,LOC107721092,LOC107678409,LOC107563848,LOC103470718 | coding | downstream | 14846 | 20748439 ~ 20756847 (-) |
ccn1l2 | LOC107698087,LOC107556215,LOC107563854,LOC107678465,LOC107714581,LOC107721104 | coding | downstream | 64497 | 20700023 ~ 20707196 (-) |
si:dkey-90l8.3 | si:dkey-90l8.3,LOC107714563,LOC107698086,LOC107556214,LOC107563853,LOC103024553,LOC108426648,LOC108264996 | coding | downstream | 75003 | 20690830 ~ 20696690 (-) |
bcl2l16 | bcl2l16,LOC107714610,LOC107556213,LOC107698085,LOC107721090,LOC107678407 | coding | downstream | 107164 | 20662169 ~ 20664529 (-) |
LOC122350675 | cox5b1,LOC107698109,LOC107556219,LOC107747804,LOC108426657,LOC107602047,LOC107718706 | coding | upstream | 94976 | 20917028 ~ 20919100 (-) |
LOC122350417 | phyhip,LOC107747796,LOC107721105,LOC107698112,LOC107556234,LOC107678475,LOC108426626 | coding | upstream | 109898 | 20931950 ~ 20943305 (-) |
klhl22 | klhl22,LOC107747800,LOC107563177,LOC107698116,LOC107678468,LOC107556236 | coding | upstream | 284808 | 21106860 ~ 21129774 (-) |
LOC122349897 | NA | coding | upstream | 360672 | 21182724 ~ 21183689 (-) |
LOC122349890 | NA | coding | upstream | 408702 | 21230754 ~ 21232347 (-) |
G65717 | NA | non-coding | downstream | 46239 | 20723266 ~ 20725454 (-) |
G65704 | NA | non-coding | downstream | 160770 | 20610562 ~ 20610923 (-) |
G65697 | NA | non-coding | downstream | 201400 | 20567158 ~ 20570293 (-) |
G65696 | nr6a1a,nr6a1,LOC107721088,LOC107698081 | non-coding | downstream | 211722 | 20559631 ~ 20559971 (-) |
LOC122349883 | NA | non-coding | downstream | 265720 | 20491849 ~ 20505973 (-) |
G65732 | NA | non-coding | upstream | 58970 | 20881022 ~ 20881433 (-) |
G65728 | dbnl | non-coding | upstream | 64172 | 20886224 ~ 20892629 (-) |
G65750 | NA | non-coding | upstream | 104559 | 20926611 ~ 20926980 (-) |
G65752 | NA | non-coding | upstream | 106210 | 20928262 ~ 20928477 (-) |
G65759 | NA | non-coding | upstream | 127146 | 20949198 ~ 20951698 (-) |
LOC122350336 | LOC107714596,LOC107556216,LOC107698089 | other | downstream | 48538 | 20718940 ~ 20723155 (-) |
LOC122350560 | ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 | other | downstream | 350397 | 20415065 ~ 20421296 (-) |
zgc:154046 | adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 | other | downstream | 637348 | 20118007 ~ 20134345 (-) |
si:ch211-218o21.4 | si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 | other | downstream | 1338402 | 19428738 ~ 19433291 (-) |
LOC122351133 | NA | other | downstream | 1569316 | 19202277 ~ 19202377 (-) |
gna14a | gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 | other | upstream | 192941 | 21014993 ~ 21025831 (-) |
G66086 | si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 | other | upstream | 949416 | 21771468 ~ 21776620 (-) |
G66090 | NA | other | upstream | 962652 | 21784704 ~ 22254189 (-) |
G66119 | gfpt1,LOC107710818,LOC107752562,LOC107678434,LOC102792631 | other | upstream | 1191921 | 22013973 ~ 22025791 (-) |
G66116 | gfpt1,LOC107710818,LOC107678434,LOC107562636,LOC107553119,LOC107752562,LOC108426669,LOC103362312,LOC101170101 | other | upstream | 1206680 | 22028732 ~ 22031993 (-) |