rnf34a (rnf34a,rnf34,LOC107687978,LOC107712480,LOC107703169)


Basic Information

Item Value
gene id rnf34a
gene name rnf34a,rnf34,LOC107687978,LOC107712480,LOC107703169
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 18326458 ~ 18333713 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247606.1
TACAGTTGCACAGCGATCCTCCCGGTGCGGCTGTGGACCGAGACTGAAAATGAAGAGGTAGCCGTTTACGAGCAATGGCCAGGCTGCCTTCACGTACAGCTGGGTGACTCCCCGCGGTGTCCTGGAGTTGCTATGAAGGCGGGGGCCTCGTCCATGTGGGCATCATGCTGTGGTCTGCTGAATGAGGTGATGGGTACCGGGGCCGTGAGAGGGCAGCAGCCAGGTTTTGGGGCAGGTGCGGGGCCGTTTCGTTTCGCTCCCACTGCAGGATACTCCACATACCCAACCGCCAACGCCAGCAACACCAGTCTGGTGTGTCAAGCCTGTCGGCAAGCCTTCTCTGTCTTTAGGAGGAGGCACATCTGTTCTGACTGTAAGAAGAGCTTTTGTTCGCTGTGCTCGGTACTTCAGGAAAACCTGCGCAGATGCACGACCTGTCACCTGCTGAAGGGCACTGCATTCCAGCGTCCCCAGCTCATGCGTCTGCGTGTTAAAGACTTGCGGCAGTACCTCACGTTACGCAACATTAACACTGATACCTGCAGGGAGAAGGAGGATCTTGTGGACTTGGTGCTTTGCCATCAAGGGGCAGAGAGCGAGGACGATCCAGACACACCCTCTCTGCAGTCCCGCCCCCTCTATAGCCCACCGCCTTCAATTGAAGAGCCCACTTCCCCTCTCTCAGCGCTCTCTCCAACTCAAGGAGAGCCAATCAGTAGGAGCAACAGCTCAGAGTCCACCAATCAGGACATCGAGGACTCCACTTCAGTGTCACTCCTTAACCTCGACCAGACAGAACACACGCCTGAGGTCAGTCCTCAGACGCGGCGGCGGGCTAGAGCTTCTCTGTCAGACCTGTCGTCTCTTGATGATGTGGAGCAGCTGACCGTACGGCAGCTGAAGGAGATCCTGGCGAGGAACTTCGTGAGCTTCTCGGGCTGCTGTGAGAAGTGGGAGCTGGTGGAGCGCGTCAGGAGGCTTTACCGGGAGAGCGAGGACAATCGCAAATCTATGGAAAATGTGAGCAACCCCATTACTGCAGTGGTAGCTTATCCCCCTCCAATCTGCAATGGTGGAATCGGAGatgGTTGCAAAACCCAGTTAGCAAATGACGACAACCTGTGTCGCATCTGTATGGACGCAATAATAGACTGCGTGCTGCTGGAGTGCGGTCACATGGTCACCTGCACTAAGTGCGGGAAGCGCATGAGTGAATGTCCTATCTGCAGACAGTACGTTATCAGGGCTGTGCATGTTTTCAAGTCTTAATGCTGCTGGGAGAACATCCCGCTCCACCCGTGGACCATTTGGAGACTGGATGAGGACGTGTGCCCTGTCTTTACATCGGAACAGTGAGAAAGATACAATTCTCTGCTtaatttttcatgaagtttcggGAAGCCTTCAGACAGCGGTCCGCAGCGGCTTTGTCAATAAATGCTTCAATAAAAACATTCCACAAGCTCTTTCAAAGAGGCTCTGTAATAATATGCAATTGTTCAGCAGCAGCACCTCACAGCCTTGACTCGATGTCCTACAGCTTTGAAAGCATCCTGCTCACCTGTCACACGCGAGCACTGTGAGAGACTCACCAAATGAGAATCACTCAAGTGTGTTCATCATCATGCGCCATAACTCAGGATGAAGGATCCGAATGTCCccgttcttcttcttctatgTTCGTTGCAACATCTGTGAATGGGCTTTTGTTTTGCGTAGCCGAACAAAGTTTTAGAGTTCCTAAAAGTTACGTTGTACCTCCTTGTAACTTGACACTGGTATGATATTGTCAGTGATTTAATGAGTGGCATAATGAAGGTTTTGTGGTATGCAACAGGTCATTATtcagttctgtttttattttttatcacgCAACTTTTTCGTTCTTTTTCAAATGTCTTGTTTGCTAAGTTTCTCAGTCACCGCTGTACTTTTGGGTCACGCGaccttgagtgtgtgtgaagtcGGTGAGAAACGGGAAGGGATAGAACTGTTTTGTAAAGTGAGACCGTAAACGGGCACAGTGTAACTGTTAATGAACAGAATTcggaaatgtgcattttatgtaTGTGCAAAGTAACAGTAACTTAATCAAAATGCACAGTGTAAAACAAAGACTTATTTTAGGTGCCAAACAATCTTCAGTGCAGTTACTGTTGCTTTTCTGTTATTGATAGTACGTCTAAAAACCTTAAgaaaaattaagtgaaaataAGGACACCATGAGAGAGGTGCCCTATACAAATCATATACCCATATTTTGTAGCCATTGCTCACTTGTGTGATAAAACCTTATTAAACATTGCATTATGGCACATTGCATAGCGCTGACGAGCATCAGCTGCACAAATGAATGCTTCACTCAGACACCATAGCAATACCAGCCTCTTTTCGTGTGGCATTTTAGATTATAAGGCATTCATGTAATGTTACGGTGTGTATTCAGATTCGTTACGTTTAcgacatatctttttttttttcccccccgagTATACGCCTATtcagatgtttatttttcttaacccAAAGTAATTTTTCATTTGGTCAGTTGCTCTGTTAATTTAATATAGAATTAACAAACAAGATGTACGTTCTTAGTTACCCTTGTGATACTTAAATAAAAGTGCTAAGAAATATTTGTA
>XM_043247607.1
TACAGTTGCACAGCGATCCTCCCGGTGCGGCTGTGGACCGAGACTGAAAATGAAGAGGTAGCCGTTTACGAGCAATGGCCAGGCTGCCTTCACGTACAGCTGGGTGACTCCCCGCGGTGTCCTGGAGTTGCTATGAAGGCGGGGGCCTCGTCCATGTGGGCATCATGCTGTGGTCTGCTGAATGAGGTGATGGGTACCGGGGCCGTGAGAGGGCAGCAGCCAGGTTTTGGGGCAGGTGCGGGGCCGTTTCGTTTCGCTCCCACTGCAGGATACTCCACATACCCAACCGCCAACGCCAGCAACACCAGTCTGGTGTGTCAAGCCTGTCGGCAAGCCTTCTCTGTCTTTAGGAGGAGGCACATCTGTTCTGACTGTAAGAAGAGCTTTTGTTCGCTGTGCTCGGTACTTCAGGAAAACCTGCGCAGATGCACGACCTGTCACCTGCTGAAGGGCACTGCATTCCAGCGTCCCCAGCTCATGCGTCTGCGTGTTAAAGACTTGCGGCAGTACCTCACGTTACGCAACATTAACACTGATACCTGCAGGGAGAAGGAGGATCTTGTGGACTTGGTGCTTTGCCATCAAGGGGCAGAGAGCGAGGACGATCCAGACACACCCTCTCTGCAGTCCCGCCCCCTCTATAGCCCACCGCCTTCAATTGAAGAGCCCACTTCCCCTCTCTCAGCGCTCTCTCCAACTCAAGGAGAGCCAATCAGTAGGAGCAACAGCTCAGAGTCCACCAATCAGGACATCGAGGACTCCACTTCAGTGTCACTCCTTAACCTCGACCAGACAGAACACACGCCTGAGGTCAGTCCTCAGACGCGGCGGCGGGCTAGAGCTTCTCTGTCAGACCTGTCGTCTCTTGATGATGTGGAGCAGCTGACCGTACGGCAGCTGAAGGAGATCCTGGCGAGGAACTTCGTGAGCTTCTCGGGCTGCTGTGAGAAGTGGGAGCTGGTGGAGCGCGTCAGGAGGCTTTACCGGGAGAGCGAGGACAATCGCAAATCTATGGAAAATGTGAGCAACCCCATTACTGCAGatgGTTGCAAAACCCAGTTAGCAAATGACGACAACCTGTGTCGCATCTGTATGGACGCAATAATAGACTGCGTGCTGCTGGAGTGCGGTCACATGGTCACCTGCACTAAGTGCGGGAAGCGCATGAGTGAATGTCCTATCTGCAGACAGTACGTTATCAGGGCTGTGCATGTTTTCAAGTCTTAATGCTGCTGGGAGAACATCCCGCTCCACCCGTGGACCATTTGGAGACTGGATGAGGACGTGTGCCCTGTCTTTACATCGGAACAGTGAGAAAGATACAATTCTCTGCTtaatttttcatgaagtttcggGAAGCCTTCAGACAGCGGTCCGCAGCGGCTTTGTCAATAAATGCTTCAATAAAAACATTCCACAAGCTCTTTCAAAGAGGCTCTGTAATAATATGCAATTGTTCAGCAGCAGCACCTCACAGCCTTGACTCGATGTCCTACAGCTTTGAAAGCATCCTGCTCACCTGTCACACGCGAGCACTGTGAGAGACTCACCAAATGAGAATCACTCAAGTGTGTTCATCATCATGCGCCATAACTCAGGATGAAGGATCCGAATGTCCccgttcttcttcttctatgTTCGTTGCAACATCTGTGAATGGGCTTTTGTTTTGCGTAGCCGAACAAAGTTTTAGAGTTCCTAAAAGTTACGTTGTACCTCCTTGTAACTTGACACTGGTATGATATTGTCAGTGATTTAATGAGTGGCATAATGAAGGTTTTGTGGTATGCAACAGGTCATTATtcagttctgtttttattttttatcacgCAACTTTTTCGTTCTTTTTCAAATGTCTTGTTTGCTAAGTTTCTCAGTCACCGCTGTACTTTTGGGTCACGCGaccttgagtgtgtgtgaagtcGGTGAGAAACGGGAAGGGATAGAACTGTTTTGTAAAGTGAGACCGTAAACGGGCACAGTGTAACTGTTAATGAACAGAATTcggaaatgtgcattttatgtaTGTGCAAAGTAACAGTAACTTAATCAAAATGCACAGTGTAAAACAAAGACTTATTTTAGGTGCCAAACAATCTTCAGTGCAGTTACTGTTGCTTTTCTGTTATTGATAGTACGTCTAAAAACCTTAAgaaaaattaagtgaaaataAGGACACCATGAGAGAGGTGCCCTATACAAATCATATACCCATATTTTGTAGCCATTGCTCACTTGTGTGATAAAACCTTATTAAACATTGCATTATGGCACATTGCATAGCGCTGACGAGCATCAGCTGCACAAATGAATGCTTCACTCAGACACCATAGCAATACCAGCCTCTTTTCGTGTGGCATTTTAGATTATAAGGCATTCATGTAATGTTACGGTGTGTATTCAGATTCGTTACGTTTAcgacatatctttttttttttcccccccgagTATACGCCTATtcagatgtttatttttcttaacccAAAGTAATTTTTCATTTGGTCAGTTGCTCTGTTAATTTAATATAGAATTAACAAACAAGATGTACGTTCTTAGTTACCCTTGTGATACTTAAATAAAAGTGCTAAGAAATATTTGTA
>XM_043247608.1
TACAGTTGCACAGCGATCCTCCCGGTGCGGCTGTGGACCGAGACTGAAAATGAAGAGGTAGCCGTTTACGAGCAATGGCCAGGCTGCCTTCACGTACAGCTGGGTGACTCCCCGCGGTGTCCTGGAGTTGCTATGAAGGCGGGGGCCTCGTCCATGTGGGCATCATGCTGTGGTCTGCTGAATGAGGTGATGGGTACCGGGGCCGTGAGAGGGCAGCAGCCAGGTTTTGGGGCAGGTGCGGGGCCGTTTCGTTTCGCTCCCACTGCAGGATACTCCACATACCCAACCGCCAACGCCAGCAACACCAGTCTGGTGTGTCAAGCCTGTCGGCAAGCCTTCTCTGTCTTTAGGAGGAGGCACATCTGTTCTGACTGTAAGAAGAGCTTTTGTTCGCTGTGCTCGGTACTTCAGGAAAACCTGCGCAGATGCACGACCTGTCACCTGCTGAAGGGCACTGCATTCCAGCGTCCCCAGCTCATGCGTCTGCGTGTTAAAGACTTGCGGCAGTACCTCACGTTACGCAACATTAACACTGATACCTGCAGGGAGAAGGAGGATCTTGTGGACTTGGTGCTTTGCCATCAAGGGGCAGAGAGCGAGGACGATCCAGACACACCCTCTCTGCAGTCCCGCCCCCTCTATAGCCCACCGCCTTCAATTGAAGAGCCCACTTCCCCTCTCTCAGCGCTCTCTCCAACTCAAGGAGAGCCAATCAGTAGGAGCAACAGCTCAGAGTCCACCAATCAGGACATCGAGGACTCCACTTCAGTGTCACTCCTTAACCTCGACCAGACAGAACACACGCCTGAGGTCAGTCCTCAGACGCGGCGGCGGGCTAGAGCTTCTCTGTCAGACCTGTCGTCTCTTGATGATGTGGAGCAGCTGACCGTACGGCAGCTGAAGGAGATCCTGGCGAGGAACTTCGTGAGCTTCTCGGGCTGCTGTGAGAAGTGGGAGCTGGTGGAGCGCGTCAGGAGGCTTTACCGGGAGAGCGAGGACAATCGCAAATCTAatgGTTGCAAAACCCAGTTAGCAAATGACGACAACCTGTGTCGCATCTGTATGGACGCAATAATAGACTGCGTGCTGCTGGAGTGCGGTCACATGGTCACCTGCACTAAGTGCGGGAAGCGCATGAGTGAATGTCCTATCTGCAGACAGTACGTTATCAGGGCTGTGCATGTTTTCAAGTCTTAATGCTGCTGGGAGAACATCCCGCTCCACCCGTGGACCATTTGGAGACTGGATGAGGACGTGTGCCCTGTCTTTACATCGGAACAGTGAGAAAGATACAATTCTCTGCTtaatttttcatgaagtttcggGAAGCCTTCAGACAGCGGTCCGCAGCGGCTTTGTCAATAAATGCTTCAATAAAAACATTCCACAAGCTCTTTCAAAGAGGCTCTGTAATAATATGCAATTGTTCAGCAGCAGCACCTCACAGCCTTGACTCGATGTCCTACAGCTTTGAAAGCATCCTGCTCACCTGTCACACGCGAGCACTGTGAGAGACTCACCAAATGAGAATCACTCAAGTGTGTTCATCATCATGCGCCATAACTCAGGATGAAGGATCCGAATGTCCccgttcttcttcttctatgTTCGTTGCAACATCTGTGAATGGGCTTTTGTTTTGCGTAGCCGAACAAAGTTTTAGAGTTCCTAAAAGTTACGTTGTACCTCCTTGTAACTTGACACTGGTATGATATTGTCAGTGATTTAATGAGTGGCATAATGAAGGTTTTGTGGTATGCAACAGGTCATTATtcagttctgtttttattttttatcacgCAACTTTTTCGTTCTTTTTCAAATGTCTTGTTTGCTAAGTTTCTCAGTCACCGCTGTACTTTTGGGTCACGCGaccttgagtgtgtgtgaagtcGGTGAGAAACGGGAAGGGATAGAACTGTTTTGTAAAGTGAGACCGTAAACGGGCACAGTGTAACTGTTAATGAACAGAATTcggaaatgtgcattttatgtaTGTGCAAAGTAACAGTAACTTAATCAAAATGCACAGTGTAAAACAAAGACTTATTTTAGGTGCCAAACAATCTTCAGTGCAGTTACTGTTGCTTTTCTGTTATTGATAGTACGTCTAAAAACCTTAAgaaaaattaagtgaaaataAGGACACCATGAGAGAGGTGCCCTATACAAATCATATACCCATATTTTGTAGCCATTGCTCACTTGTGTGATAAAACCTTATTAAACATTGCATTATGGCACATTGCATAGCGCTGACGAGCATCAGCTGCACAAATGAATGCTTCACTCAGACACCATAGCAATACCAGCCTCTTTTCGTGTGGCATTTTAGATTATAAGGCATTCATGTAATGTTACGGTGTGTATTCAGATTCGTTACGTTTAcgacatatctttttttttttcccccccgagTATACGCCTATtcagatgtttatttttcttaacccAAAGTAATTTTTCATTTGGTCAGTTGCTCTGTTAATTTAATATAGAATTAACAAACAAGATGTACGTTCTTAGTTACCCTTGTGATACTTAAATAAAAGTGCTAAGAAATATTTGTA

Function

symbol description
rnf34a Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in cellular protein metabolic process and negative regulation of apoptotic process. Predicted to act upstream of or within apoptotic process. Predicted to be located in membrane. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human RNF34 (ring finger protein 34).
rnf34 Enables several functions, including p53 binding activity; ubiquitin protein ligase activity; and ubiquitin protein ligase binding activity. Involved in several processes, including cellular protein metabolic process; negative regulation of apoptotic process; and negative regulation of signal transduction by p53 class mediator. Located in cytoplasm; nuclear body; and plasma membrane.

NR:

description
E3 ubiquitin-protein ligase RNF34-like isoform X4

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20804 RNF34; E3 ubiquitin-protein ligase RNF34

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247606.1 True 2642 mRNA 0.47 9 18326458 18333713
XM_043247607.1 False 2600 mRNA 0.47 8 18326458 18333713
XM_043247608.1 False 2570 mRNA 0.47 7 18326458 18333713

Neighbor

gene id symbol gene type direction distance location
ggt5a ggt5a,LOC107703163,LOC107753105,LOC107712462,LOC107550924,LOC107580168 coding upstream 85228 18233930 ~ 18241230 (+)
hnf1a hnf1a,LOC107712475,LOC107687971,LOC107550982 coding upstream 219651 18098897 ~ 18106807 (+)
si:ch211-170d8.2 LOC107550939,LOC107753111,LOC107703157,LOC107554433,LOC107687993,LOC107712458 coding upstream 228155 18095035 ~ 18098303 (+)
hps4 LOC107712456,LOC107753110,LOC107687970,LOC107703156,LOC107554431,LOC107550983 coding upstream 231818 18086790 ~ 18094640 (+)
LOC122350291 cox6a1,LOC107687992,LOC107712455,LOC107550940,LOC107753112,LOC107703158,LOC107554435 coding upstream 239815 18084432 ~ 18086643 (+)
orai1a orai1a,orai1,LOC107550979,LOC107687980,LOC107703171,LOC107753099,LOC106585507 coding downstream 15380 18349093 ~ 18354266 (+)
gck gck,LOC107657322,LOC107550933,LOC107712466,LOC107753094,LOC107703174 coding downstream 74373 18408086 ~ 18417020 (+)
LOC122350731 LOC107703135,LOC107753145,LOC107550932,LOC107712468,LOC107657321 coding downstream 109362 18443075 ~ 18447061 (+)
dusp2 dusp2,LOC107657330,LOC107712482,LOC107550972,LOC107554416,LOC107703175 coding downstream 119863 18453576 ~ 18456539 (+)
zgc:152830 zgc:152830,LOC107550967,LOC107657328,LOC107703177,LOC107554415,LOC107712486 coding downstream 275002 18608715 ~ 18614892 (+)
G64841 NA non-coding upstream 38917 18287296 ~ 18287541 (+)
G64835 NA non-coding upstream 101757 18224397 ~ 18224701 (+)
LOC122351024 NA non-coding upstream 167868 18153643 ~ 18158590 (+)
G64665 NA non-coding upstream 667140 17359434 ~ 17659318 (+)
LOC122350066 LOC107748143,LOC107687963,LOC107553839,LOC107684508,LOC107753120,LOC107565328 non-coding upstream 953132 17365621 ~ 17373326 (+)
G64855 NA non-coding downstream 13724 18347437 ~ 18348783 (+)
G64858 NA non-coding downstream 32857 18366570 ~ 18367110 (+)
G64862 NA non-coding downstream 56961 18390674 ~ 18391211 (+)
G64878 NA non-coding downstream 117329 18451042 ~ 18451364 (+)
G64889 NA non-coding downstream 283265 18616978 ~ 18618184 (+)
lrrc75ba lrrc75ba,LOC107712478,LOC107753104,LOC107703167,LOC107554425,LOC107687975,LOC105891565,LOC108414797 other upstream 41497 18258220 ~ 18284961 (+)
LOC122350298 pla2g1b,LOC107703141,LOC107753147,LOC107554411,LOC107554412,LOC107550943 other upstream 245889 18071485 ~ 18080569 (+)
LOC122350299 LOC107550944,LOC107687988,LOC107753148,LOC107703140 other upstream 255530 18068716 ~ 18070928 (+)
LOC122350300 LOC107687986,LOC107554413,LOC107703155,LOC101885033,LOC108412050 other upstream 264110 18056972 ~ 18062348 (+)
LOC122350649 si:ch73-138n13.1,LOC107687963,LOC107748143,LOC107553839,LOC107565328,LOC107684508,LOC107753120 other upstream 630052 17683305 ~ 17696406 (+)
sb:cb288 NA other downstream 85235 18418948 ~ 18423805 (+)
adra2b adra2b,LOC107712484,LOC107657329,LOC107554404,LOC107753091,LOC107550971,LOC107703147 other downstream 126338 18460051 ~ 18464547 (+)
gpat2 gpat2,LOC107712449,LOC107550920,LOC107657318 other downstream 231986 18565699 ~ 18600484 (+)
si:ch211-158d24.2 si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137 other downstream 361741 18695454 ~ 18722246 (+)
G65100 sf3a1,LOC107564451,LOC107550953 other downstream 761234 19094947 ~ 19096071 (+)

Expression


Co-expression Network