creb3l3l (creb3l3l,LOC107711890,LOC107686399,LOC107724916,LOC107667558,LOC107599998)


Basic Information

Item Value
gene id creb3l3l
gene name creb3l3l,LOC107711890,LOC107686399,LOC107724916,LOC107667558,LOC107599998
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 14842494 ~ 14847964 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247621.1
CGATGACGCAAATTTTGCCTCGTTGGAGGGTGATTTCATCAGGAACAGGACAAAGACAGAAGGCACTTCCTATTTGTTGTATATGTCCACGTATCTTTTTTCGCTTCCAGATCATCACAGTGTCACATGTCAGTGAGCGAAGATATGGAGAATACAGACCTGCTCGGTCTGATCTTCCCCGATGAAGACCCAGGATCCGGCGATCTGTTCCTCACAGAGGGGAATAACTTGCTGGATGATTTGCTTTCAGAGCAAGATATGCTGAGTGGAATGGATACAGAGGACTTCCTCAGCAGTCTTCtgggagaggaggaggacggCGTGGCTATCAGCTGCTTGTCTCAGTCTCCTCATGGCAGTGACAGTGGCATCTCCGAGGACACCACCCCTCCGCACTGCCAGAGTCCCAACGACAGCAGCGAGACAGACACCGTGCCCAGCCCAGGCATCGAGCCTCTGCTGTACTCCGAGTGTCTGACGGAGAGCTACGAGGCCCAGGTGGTGCAGACGGACCACTGCTACACCCTCCCGCAGGGCACAGACGCCCTGCTGAGCGTCCGATCAGAGAACCCCGAGTCCGATGTCTTCATAGATGTCGATGATTTGGACATGGATATGGATATGGATATGGATGATGACTTCTCCCCAGAGCTGCCCTGCTCTCTCACGATTGAAGACGCCACGCAAAGCAGCAAAGCAGACACCCTGTTCcagtttaaagaaatagttttgaCTGATGAGGAGAGGAGACTTCTGGCGAAGGAAGGAGCAACCATTCCAACTCATATGCCTCTCACAAAGGCAGAGGAACGGACCCTGAAGAGGGTGAGGAGAAAGATTCGGAATAAGCAGTCTGCTCAGGAGAGTcgcaagaagaagaaggtttACGTTGATGGCCTGGAGAACAGGGTTGCAATCTGCACTGCTCACAATCAGGAATTACAGAAGAAAGTTGAGATGCTGCAGAAACAGAACATGTCTCTTGTTGAACAGCTGAGAAAACTTCAGGCTATGGTGAAAATGTCCACGATGAAAACCACCACGACCAGCACTTGTATCATGGTATTCctgctttctttctgtctgatcATTTTCCCTTCAGTCAATCCGTTTGACAGCAGCACTCAGAAAGATCTGTATGCGTCATCTACAGGAATGTCCCGAGCCCTGCGGTCTTATCCAGCTATCCATAAAGAAGACATCGTTTCCACGCCTGCTAAAGAAGTACCAGAGCAGGATGTCCTCCTCGTGGCCACTGTAGAGAATAACCAGGTGCTGCTGTCCGGCGCTCAGAACCACACACCTGACTACCAGCGGGTCGAGCAGCCCGACTCCGAGTCTGGTGTCAACAGCAACTCCTCCGCTGACTTCCCCAGTCCTGCCCAGTCAGACCTCAAAGCGGACGCATCTCTCTCAGAGTCCCACAGGAACTCGGCAGCGCCTCCGGTGATCTACGACGGCCAGAGCAAAACCAAGGAGAGCTGGATGGAGCAGAAACCCACGTCAGTTATAATACAACAGCACCGATCTGATGAAATGTAGGAGAGCATTTGCTTAAGATGAAAGATTCAGTATAGCCATTTTCTCTTCGTTATAGCATCACAGCCTGAACCTTTTTCCTTCGTTTTTGTTCTTTACATGGATCTGTCATGCTAtaatagcacttttttttaatacccaGCCATTTGTTAGGACATTATTGTTCTATCCACCTGCACAAATAGTGAAGCTTTTTCAATGGAGACGTGACTGagtcatgttgttttaaactcTGCATTGCATCCACATTGAGATTTAGTACATTCAGGAAATGTATTCATTCGTCTGTATTACTTGAGACATTTTAGGACTTTTGGgcatctaataaaatattattttcccttttttagtAAGGGAGCCATATGCTTAAAGAGATTTCACTACTGAAAAATGATCAGTCCTAGTGATTATAGGAGTGTATTTAGAAAAGggaaaagctatttttttctgcttgtgCATTATTTGTGGCTTAGTACCCCTTCCGTTAAACCGCTGTAAATTTTGCTTTATATGTACCTTTTAGAGGGGGTATATTACTGCACATATCCATGcaataataatgcattgtttatgtctatatatgtatatacatatatatgaaaaaaatgtcatgatCTGCTGTGTCAGAGaagcatttttatgttattttttgatgttgatattttgtctttaaaagacTTCTTTTATTGCAGtcttttttattgatttcttttaatCTTTGGTCATATGATGCACTGATGTATCTGAAAACATGGAATGTTGATAAACTGTACTGTCGTGATCatgttattgttaattaaaaatgatcggtttattataaaaaaa

Function

symbol description
creb3l3l Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in central nervous system; liver; notochord; sensory system; and yolk syncytial layer. Orthologous to human CREB3 (cAMP responsive element binding protein 3).

NR:

description
cyclic AMP-responsive element-binding protein 3-like protein 4

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247621.1 True 2364 mRNA 0.45 10 14842494 14847964

Neighbor

gene id symbol gene type direction distance location
gadd45ga gadd45ga,LOC107724875,LOC107667521,LOC107686412,LOC107602833,LOC107600042,LOC108412735 coding downstream 2149 14838764 ~ 14840345 (-)
vgll4l vgll4l,LOC107724882,LOC107667543,LOC107711841,LOC107600043,LOC107602859,LOC107686413,LOC107686414 coding downstream 83843 14741309 ~ 14758651 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001 coding downstream 119549 14707862 ~ 14722945 (-)
ralgds si:ch211-251j10.3,LOC107667531,LOC107724899,LOC107602853,LOC107600003,LOC107667907,LOC107711877 coding downstream 148894 14671725 ~ 14693600 (-)
smarcb1a smarcb1a,smarcb1,LOC107602851,LOC107600005,LOC107667904 coding downstream 172088 14664819 ~ 14670406 (-)
nim1ka nim1k,LOC107602863,LOC107667564,LOC107686411,LOC107599996,LOC108412738 coding upstream 542 14848506 ~ 14858964 (-)
znf131 znf131,LOC107667557,LOC107602864,LOC107724914,LOC107686396,LOC107711893 coding upstream 11673 14859637 ~ 14863781 (-)
ghra LOC107602865,LOC107724907,LOC107711892 coding upstream 25222 14873186 ~ 14903503 (-)
fbxo4 LOC107667563,LOC107686410,LOC107724879,LOC107599997,LOC107602866,LOC107711844 coding upstream 61954 14909918 ~ 14914015 (-)
c8h5orf51 si:dkey-46a10.3,LOC107667559,LOC107686395,LOC107711895,LOC107602868,LOC106580621,LOC106585203 coding upstream 66692 14914656 ~ 14919170 (-)
G64238 NA non-coding downstream 1728 14840523 ~ 14840766 (-)
G64236 NA non-coding downstream 3878 14838381 ~ 14838616 (-)
G64227 NA non-coding downstream 63130 14778898 ~ 14779364 (-)
G64223 NA non-coding downstream 73223 14768973 ~ 14769271 (-)
G63997 NA non-coding downstream 543904 14298291 ~ 14298590 (-)
G64229 sepp1a,LOC107576224 non-coding upstream 17834 14865798 ~ 14869687 (-)
G64278 NA non-coding upstream 151767 14999731 ~ 15000001 (-)
G64337 NA non-coding upstream 320714 15168678 ~ 15170180 (-)
G64338 NA non-coding upstream 323980 15171944 ~ 15172605 (-)
G64336 NA non-coding upstream 328072 15176036 ~ 15178095 (-)
G64228 NA other downstream 60784 14779531 ~ 14781710 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other downstream 111103 14723712 ~ 14731391 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other downstream 387251 14385600 ~ 14455243 (-)
G63933 LOC107556304,LOC107751435,LOC107594508 other downstream 979244 13809428 ~ 13863250 (-)
mc3r mc3r,LOC107751459,LOC107669608,LOC107711834,LOC107680356 other downstream 1121980 13716628 ~ 13720514 (-)
G64353 hmcn2,LOC107723245,LOC107659581,LOC107570300 other upstream 435897 15283861 ~ 15284130 (-)
mvb12bb mvb12b,LOC107550570,LOC107753158,LOC107723228 other upstream 801262 15649226 ~ 15700896 (-)
LOC122350093 NA other upstream 1559870 16407834 ~ 16409696 (-)
LOC122350945 drd2b,LOC107745132,LOC107705176,LOC107691748,LOC107664308,LOC107600777,LOC107556418,LOC108428674 other upstream 2198503 17046467 ~ 17096795 (-)
LOC122350953 NA other upstream 2472412 17320376 ~ 17401228 (-)

Expression


Co-expression Network