LOC122350872 (soat1,LOC107657858,LOC107758003,LOC107700347)


Basic Information

Item Value
gene id LOC122350872
gene name soat1,LOC107657858,LOC107758003,LOC107700347
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 7363235 ~ 7370455 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247636.1
TCTGTTTGCACTGTAACGGATGCAGTTATTCTGTTTGCTATGCTAGATTAGTTAAAGATTAGTGGTGTGGTTACCAGGATACGTGTCCAGTATGACCTGCTCCATCTGTGTATGGAACTGTACCGATGTCTCATTTCAGGAACTGTGGAAGTGGAGCGCATCATCAGCGCAAAACTACAGCTGAAGAAGAAAGCTGAGcactTGAAGGCGGACCTGATGAGGCAGTTCGACACTCAAGTCAATGAATTCATGGACAGCCTGATAGAGGAGTCTGCCAGTCTGGATTCATCCCGCGTGAGCACAGCCTTTCCTCTCCCGGATAAGGAGAAAAGCAAACTCAGGCATACACAACCTTCCCAAGGCCAAAGCAAGCAGTTTGTGATCCGCCGATCCCTTTTAGACGATCTGTTTGAGGTGAACCACATTCGCACCATCTATCACATGTTCATCgccctcctcatcctcttcatcttcagcaCGCTCGTCGTGGACTTCATCGATGAGGGCAGACTGGTGCTTGAGTTTGATCTGTTGGTGTACGCGTTTGGCCAGTTCCCCCTAGTGGTTGTCACGTGGATGTGTATGTTCCTGTCCACGCTTGTAGTTCCATATGTATTGCTCAGTGTCTGGGCTAGCGTTTACCCCGCGTCAAACCATCGGGCCTTATGGACGGTGCTGGCCGGTTCTCTCTTGCTGCTGTACCAGGGACTGTGTTTGGGTTTCTTGCCCACATACGTGGTGCTGAAGAACAGCCTTCCCCCTGCTTCATGCTTCATACTTATTCTAGAACAGgTGCGGCTGATAATGAAGGCTCACTCTTTCATCAGGGAAAATGTGCCAAGAGTGCGATCCTTAGAACGAAACAAAGCAAATTCTTTAGCTGTACCTCAGTTCACCCAGTACATTTACTTTCTATTTGCACCCACCCTGATATACAGAGATAATTATCCACGAAATCCATGTATTCGGTGGGGTTACGTGGCTACAAAGTTTTCGCAGGTTCTGGGCTCTTTGTTTTATGCGCACTACATATTTGTGCGTGGCTGTGTATCCCTCAGTTCCGTGAGCATCAGCATGCAGCTCTTTGATCTGAGGGCCATGGTGTTGTGTGTCTTCAACTCTATACTGCCAGGAGTGCTGGtgcttttttgcatttttgccTTTCTTCATTGCTGGCTTAATGCATTTGCTGAAATGCTAAGGTTTGGAGACAGAATGTTTTATAAGGACTGGTGGAACTCTACTTCATTTGCCAACTATTACCGCACATGGAATGTTGTAGTACATGATTGGCTTTATTACTATGTCTACAGGGACTTTCTGTGGATGACACAGAAGCGATTCCGTGCAGCGGCCATGTTGATCGTTTTTACTGTGTCTGCTGTGGTGCACGAGTACGTTCTGGCCATCTGCTTTGGCTTCTTCTATCCCGTCTTGTTCTGCATCTTCATGTGCTTTGGAATGGTGTTTAACTTCGTTCTTAATGACCGGAGGAAAGGGCCGATCTGGAACGTGATCATGTGGACTGCGCTGTTCTTGGGTCAGGGCGTTCTCATCTGTCTCTACTCTCAGGAGTGGTATGCGCAGCGCTTCTGCCCCATTCAAGAGccTTCTTTCCTAGACTTGCTGAAGCCTCGATCTTGGACTTGTACGCCACAGACTAACACTGCCGTACGTGCTCACTGAAGACCACAATACCAGCCTCCAGACGAATCAGATTTGTCCTTAATGTATTCtggaacttttttttagcattctaTAGGTATTGCACTCTGaccaaacaaactgaaaagtgACAATCGTACTTTATAATCACGAGGACAATGTTTTACGAAGAGGCcttagatatttaatatttattatgacatCCACATTAGAATGCAGAACGGTTATAATGTGCATTAGgattatttctttgtttcttttcaaaagtttttggCAGTCTATTTTAGGTTATGTCTGATCTGGCTAAAGAGATTCTATTTTTAGAAGCCTCTGTGATGTTGAGGAGTTGACTTGAGATCGgattatacagtaaatgtgttttgtttactgCCTCTTCTTAGATAGTGTTTGATATTGTGGTGTAAATCCAGCACTGGAGAGGCCATGGAAGATTATACATGTGGTGCATTTTAACCAGTATGGCCGGACTACTCAAAACTTGAATATTTACAAGCTGGGTTGTGAATTCTAAAACCCCAGTGGATTTTAAATGATGTGCCATACtgctgtgaaaaacaaaaatagtttaaaatagtttacttCTTACAATTTATTCCtagagttttaattaaaatgactttgatTTGGGGGAAATTGTTCTTTCTGCcagttttatttgctttagttaCTGTTCGAAGAGTTGGACTGATAGGTCTGGACTTTGGAAATTtggatttcatgtttttttccttt

Function

symbol description
soat1 Predicted to enable cholesterol O-acyltransferase activity; cholesterol binding activity; and fatty-acyl-CoA binding activity. Predicted to be involved in cholesterol efflux; cholesterol esterification; and cholesterol metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including eye; hatching gland; pericardial region; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Chagas disease; coronary artery disease; and hepatocellular carcinoma. Orthologous to several human genes including SOAT1 (sterol O-acyltransferase 1).

NR:

description
PREDICTED: sterol O-acyltransferase 1

GO:

id name namespace
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008374 O-acyltransferase activity molecular_function

KEGG:

id description
K00637 SOAT; sterol O-acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247636.1 True 2418 mRNA 0.44 15 7363235 7370455

Neighbor

gene id symbol gene type direction distance location
cep350 cep350 coding downstream 194443 7137062 ~ 7168792 (-)
qsox1 qsox1,LOC107665072,LOC107755296,LOC107758006,LOC107699344,LOC107603198 coding downstream 227739 7112136 ~ 7135496 (-)
sin3b sin3b,LOC107755301,LOC107758010,LOC107699271 coding downstream 488270 6860907 ~ 6874965 (-)
def6a def6a,LOC107550223,LOC107755289,LOC107599059,LOC107757990,LOC107700524 coding downstream 503529 6850516 ~ 6859706 (-)
ndufb11 LOC107550213,LOC107665059,LOC107700515,LOC107599058,LOC107755291,LOC107757991 coding downstream 513520 6848473 ~ 6849715 (-)
LOC122350680 LOC107599044,LOC107700337,LOC107757981 coding upstream 4580 7375035 ~ 7377757 (-)
LOC122350884 NA coding upstream 10091 7380546 ~ 7382812 (-)
LOC122350867 bcar3,LOC107707585,LOC107599011,LOC107657879,LOC107699431,LOC107603218,LOC107757998 coding upstream 224528 7594983 ~ 7652306 (-)
LOC122350881 agbl4,LOC107657883,LOC107603279 coding upstream 318406 7688861 ~ 7740456 (-)
bend5 bend5,LOC107707580,LOC107757978,LOC107700377,LOC106584333 coding upstream 379960 7750415 ~ 7763209 (-)
G61865 NA non-coding downstream 54895 7306112 ~ 7308340 (-)
G61860 cacna1e,LOC107707593,LOC107657843,LOC107599003 non-coding downstream 82070 7274590 ~ 7281165 (-)
G61782 NA non-coding downstream 500281 6862028 ~ 6862954 (-)
G61663 NA non-coding downstream 704951 6657498 ~ 6658284 (-)
G61640 NA non-coding downstream 801317 6561450 ~ 6561918 (-)
LOC122350886 NA non-coding upstream 7300 7377755 ~ 7378459 (-)
LOC122350888 NA non-coding upstream 19833 7390288 ~ 7394209 (-)
G61868 abl2,LOC107599009,LOC107699422,LOC107657876,LOC107707589,LOC107603207 non-coding upstream 175355 7545810 ~ 7548323 (-)
G61959 NA non-coding upstream 291762 7662217 ~ 7663259 (-)
G61965 NA non-coding upstream 379248 7749703 ~ 7778564 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other downstream 260242 7091450 ~ 7102993 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other downstream 306806 6875349 ~ 7056429 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other downstream 546488 6814471 ~ 6816747 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other downstream 920253 6423742 ~ 6442982 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other downstream 1402129 5919961 ~ 5961106 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other upstream 307041 7677496 ~ 7687562 (-)
LOC122350139 elavl4 other upstream 746553 8117008 ~ 8232774 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other upstream 1021890 8392345 ~ 8416553 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other upstream 1276815 8647270 ~ 8649983 (-)
pola2 pola2,LOC107599808,LOC107657899 other upstream 1281849 8652304 ~ 8657286 (-)

Expression


Co-expression Network