spata6 (LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047)


Basic Information

Item Value
gene id spata6
gene name LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 7677496 ~ 7687562 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247642.1
TGGTCGCTCGGGCTGTTGTCACAGCAGCCAAGTTTGAAAACATGGGCGGACTCACGCCGCCTAAGACGCCTTCAGGTTCTCAAATGCGACAAAAAGCGTTAAAATGCACCGTCGAGGTGGATATTCAGTCTATAACTTGTCCAGGGGTGGTGTTACCGTCCCAAGAAGACATTTATGTGAGTGTTAGGATAATGGGCCAGTATCAGAAGACCAGGTGTGTCCCTCCAGTTTTCCCTCTGCTGCTGCATGAAAAAATGGTCTTTGTGAAAACCTTTGCTGGAGCAGTTGACCCGGGTGCTGTAGCTGAGCATCTGGAAAATGATACAACATCTTTAGAGCTCATTCAGCTTGTTCCTCCAGAGGGTGAGATCCTGGCCACGTTTGAAGAAGACACCCGGGAGTTTCTATATCCAGGCCCTCGTTTGACTCCCAGAAGCCCCGgcccagagagagagattctgaTGAAGAGATCCATCTCCTTCCCCGGAATCTCTCCGAAAGTGGAGTTTTCAACGACGTCTATTATTGAGGAGTGTGATGTGAAACATGGTCAGCCTGCCATGTCTTCATGTGGCCGTTCCTCAACTATGCCTTGTTCTGTGAGAACGTCCCCTGCAAAGTCAAATAGGAAGAAAAAGCCAGGCATAGTGCCATCCTGTGGATACGAAAAGCCAACGGTGGCGTCCCAAAGCCGTGCTCCTTCACCCTACACCCACCGCAAGATGTGTCAGCTGTCTGAGGAGGCCAGACAACGACTCGGCCACCTCAAACTGGGGCcctacacatttaaaaaagagaCGGTCCCTCAGGCTCCGTTCGTGGTGCCCCGAAGCCCAAACACGTCACTGATGGAAACCTCCATGTGTTTTGCATCTCAGTCTTCTTCTAAAAGAGGTTCCCTACGTCTGCAATCACGGAGCTACTCCAAAGACCACACAGATCCATCTCTCCTGGGAAGTTTCAGATCAAAGCCTTCACATGCTTCCACGCTAGCAGCTTCTCCTAAAGATCACTCCACCCCTGTGTCCAGCACGTTCAGAGATCAGAGTCCAGTCCTGTCTCGCTCTTCCCTGAGAGAACGGTTCCAGAGTTCATCCAGTCCCTCCCAGTCGGATGAGATCCACAAACGAGTGCAGAGAATCCTAAACATCCACGGGCCCCGCTGCAAGCTTTCGTTTgATGAGGAGATGGAGAAGGAGGAGGGGGTCAGACAGAGTTCACATGTTTTCACCCACCATGACTCTGTGATTGACAGCCGGCTACAGCAGGACAGACTTATTCCTGGAGAACcatctgttcatttaaacaacGGAACATTCTGGACTAACCGAGCGGCTGCGTACACAGGAAAGCCCCACAGAGCTGTGTTTGAGGACAGTTTGAACAAAATCTACAAGAACCTTTACAGCCACGCATCACAGACAGGACACAGTGACCTAAGCACCTGGACACAGTGATCACATTGaatgaatgtatttgtttatgtatgGTAAATCAAATCAGGAAAACAGTATGGGTGGAGGGCGTTTGACCATATACTTTTAACTTCCATAATGGTGACAGCATTAACAAAGCACAAATCCACTTGCTCTGGGCCTGATTTATTGTGTCTTCACCGCTGTAATCAACTGCtatcc
>XR_006251629.1
TGGTCGCTCGGGCTGTTGTCACAGCAGCCAAGTTTGAAAACATGGGCGGACTCACGCCGCCTAAGACGCCTTCAGGTTCTCAAATGCGACAAAAAGCGTTAAAATGCACCGTCGAGGTGGATATTCAGTCTATAACTTGTCCAGGGGTGGTGTTACCGTCCCAAGAAGACATTTATGTGAGTGTTAGGATAATGGGCCAGTATCAGAAGACCAGGTGTGTCCCTCCAGTTTTCCCTCTGCTGCTGCATGAAAAAATGGTCTTTGTGAAAACCTTTGCTGGAGCAGTTGACCCGGGTGCTGTAGCTGAGCATCTGGAAAATGATACAACATCTTTAGAGCTCATTCAGCTTGTTCCTCCAGAGGGTGAGATCCTGGCCACGTTTGAAGAAGACACCCGGGAGTTTCTATATCCAGGCCCTCGTTTGACTCCCAGAAGCCCCGgcccagagagagagattctgaTGAAGAGATCCATCTCCTTCCCCGGAATCTCTCCGAAAGTGGAGTTTTCAACGACGTCTATTATTGAGGAGTGTGATGTGAAACATGGTCAGCCTGCCATGTCTTCATGTGGCCGTTCCTCAACTATGCCTTGTTCTGTGAGAACGTCCCCTGCAAAGTCAAATAGGAAGAAAAAGCCAGGCATAGTGCCATCCTGTGGATACGAAAAGCCAACGGTGGCGTCCCAAAGCCGTGCTCCTTCACCCTACACCCACCGCAAGATGTGTCAGCTGTCTGAGGAGGCCAGACAACGACTCGGCCACCTCAAACTGGGGCcctacacatttaaaaaagagaCGGTCCCTCAGGCTCCGTTCGTGGTGCCCCGAAGCCCAAACACGTCACTGATGGAAACCTCCATGTGTTTTGCATCTCAGTCTTCTTCTAAAAGAGGTTCCCTACGTCTGCAATCACGGAGCTACTCCAAAGACCACACAGATCCATCTCTCCTGGGAAGTTTCAGATCAAAGCCTTCACATGCTTCCACGCTAGCAGCTTCTCCTAAAGATCACTCCACCCCTGTGTCCAGCACGTTCAGAGATCAGAGTCCAGTCCTGTCTCGCTCTTCCCTGAGAGAACGGTTCCAGAGTTCATCCAGTCCCTCCCAGTCGGATGAGATCCACAAACGAGTGCAGAGAATCCTAAACATCCACGGGCCCCGCTGCAAGCTTTCGTTTGTACGTCTCGTCTGAGATGGCAACTGCATGTAATGCTGTCATTCAGTGCACACGTTAACCCATGCAAAAGCAATCTCCAAAACACTCATTACGGCACATGTCAGTGTTTCAAACGTCCTCCATTGATTCTGTCAAGCTCTCTGTGTTCTTCACATCCATTGTGTCAGAATGTGCCACCACTGTCTTCCAGGAAGTAAACGAGgATGAGGAGATGGAGAAGGAGGAGGGGGTCAGACAGAGTTCACATGTTTTCACCCACCATGACTCTGTGATTGACAGCCGGCTACAGCAGGACAG

Function

NR:

description
spermatogenesis-associated protein 6

GO: NA

KEGG:

id description
K23224 SPATA6; spermatogenesis-associated protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247642.1 True 1637 mRNA 0.50 13 7677496 7687562
XR_006251629.1 False 1475 transcript 0.51 12 7678416 7687562

Neighbor

gene id symbol gene type direction distance location
LOC122350867 bcar3,LOC107707585,LOC107599011,LOC107657879,LOC107699431,LOC107603218,LOC107757998 coding downstream 25190 7594983 ~ 7652306 (-)
LOC122350884 NA coding downstream 294684 7380546 ~ 7382812 (-)
LOC122350680 LOC107599044,LOC107700337,LOC107757981 coding downstream 299739 7375035 ~ 7377757 (-)
LOC122350872 soat1,LOC107657858,LOC107758003,LOC107700347 coding downstream 307041 7363235 ~ 7370455 (-)
cep350 cep350 coding downstream 508704 7137062 ~ 7168792 (-)
LOC122350881 agbl4,LOC107657883,LOC107603279 coding upstream 1299 7688861 ~ 7740456 (-)
bend5 bend5,LOC107707580,LOC107757978,LOC107700377,LOC106584333 coding upstream 62853 7750415 ~ 7763209 (-)
agbl4 agbl4,LOC107603279,LOC106613892 coding upstream 349060 8036622 ~ 8137275 (-)
dmrta2 dmrta2,LOC107657863,LOC107707574,LOC107699532,LOC107743899,LOC106613895 coding upstream 584922 8272484 ~ 8275399 (-)
faf1 faf1,LOC107743872,LOC107707577 coding upstream 597669 8285231 ~ 8346021 (-)
G61959 NA non-coding downstream 14237 7662217 ~ 7663259 (-)
G61868 abl2,LOC107599009,LOC107699422,LOC107657876,LOC107707589,LOC107603207 non-coding downstream 129173 7545810 ~ 7548323 (-)
LOC122350888 NA non-coding downstream 283287 7390288 ~ 7394209 (-)
LOC122350886 NA non-coding downstream 299037 7377755 ~ 7378459 (-)
G61865 NA non-coding downstream 369156 7306112 ~ 7308340 (-)
G61965 NA non-coding upstream 62141 7749703 ~ 7778564 (-)
G61967 NA non-coding upstream 191855 7879417 ~ 7974020 (-)
LOC122350891 NA non-coding upstream 263999 7951561 ~ 7954642 (-)
LOC122351107 NA non-coding upstream 565976 8253538 ~ 8269217 (-)
G62076 NA non-coding upstream 739723 8427285 ~ 8430135 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other downstream 574503 7091450 ~ 7102993 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other downstream 621067 6875349 ~ 7056429 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other downstream 860749 6814471 ~ 6816747 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other downstream 1234514 6423742 ~ 6442982 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other downstream 1716390 5919961 ~ 5961106 (-)
LOC122350139 elavl4 other upstream 429446 8117008 ~ 8232774 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other upstream 704783 8392345 ~ 8416553 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other upstream 959708 8647270 ~ 8649983 (-)
pola2 pola2,LOC107599808,LOC107657899 other upstream 964742 8652304 ~ 8657286 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 1569681 9257243 ~ 9262826 (-)

Expression


Co-expression Network