ralgps1 (ralgps1,LOC107727327,LOC107669254,LOC108412534,LOC107723240)


Basic Information

Item Value
gene id ralgps1
gene name ralgps1,LOC107727327,LOC107669254,LOC108412534,LOC107723240
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 15307737 ~ 15390751 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247697.1
TACAACACTTCCTGATGTCGATGCCCAGCTGTTGGCAAATGACCCGCATCTCCAGCATCCGATAACGTCGTCTCTACCCACAGCACTGCCCTCACTGTTTCTCAACATACCTGCGCAAAACACGCCGCTAGCGAGGACGACGGCCATGTGCGCAGCGGAATAGGCTCAAACAGGCTTAGATCGCCCGGTGGATGAGAGCGAATCCTTTCAAATTGGATTTTTTGTGTCCTTAAGGTCGTGCTGCAGTACAGCAACATAAGCTTTGCGCTGACCGGCGCGTGCATCTCAACAGCGGGGCCGAGGACGGTGGCATATTTTCACTGACAGtatTACTAAAGAAGCGTCTCTTGGGATGGCCTTCGCCAAGCCTGCCATGCAGATATTGGCCATGTGAGAGATCTGGACAAACAAAATGGGGATGGCTGAGAGGTCGTGTGTGGCGGTGAGCAGCTGAGATCGGCTGTGATCTGGGTCTTCTCTTCTGACTGAGAGCATGTACAGGAGGAATGGACTCCCTGCCAGCGTCAGCATCACCTCCCGCCACACACAGGACAGCAGTAGTTCAGAGTCCCTGGATGGACGGAGTTTGGACTCTGCCAAGAGCTTTGATGCGGTGGTGTTTGACATGCTCAAAGTGACACCCGAGGAGTTTGCTAGTCAGATCACTTTGATGGATGCTCCTGTATTCAAAGCGATACAGCCTGAGGAGCTGGCGAGCTGTGGATGGAACAAGAAGGAGAAGCATAGCCTTTCACCCAACGTTGTGGCCTTCACAAGGAGATTTAACCAGgtcAGTTTCTGGGCAGTGAGGGAGATATTGACGGCTCAAACATTGAAAATCCGAGCAGAAATATTGGGTCACTTCATCAAAATTGCCAAGAAACTCCTGGAGCTGAATAACCTGCACTCTCTGGTGTCAGTGGTCTCTGCTCTTCAAAGCGCACCTATCTTCAGACTGAGCAAGACCTGGGCGTTGATCAGTCGAAAGGACAAGGCCACCTTCGAGAAGCTTGACTTCCTGACGTCAAAAGAAGAGAATTACAACCGCATGAGAGAATACATCAGGTCCCTCAAAATGGCCCCCTGCATCCCCTACCTAGGGATTTACCTGTTTGATATGACCTACATTGACTCCGCCTACCCTGCTTCTGATAGCATCATCGAGACTGAGCAAAGAACCAATCAAATGAACAACCTACTGCGCATCATCTCCGATCTACAGGTGTCCTGTAACTACGATCATTTAATCATGTTGCCACATGTGCAGAAGTATCTGATGTCAGTGCGCTACATCGAGGAGCTCCAGAAGTTTGTGGAGGATGACAATTACACACTATCATTGAAGATTGAGCCTGGGAACAGTTCACCTCGTCTGGTATCCTCCAAAGAAGACCTTGGAGgaCCCTCGGAAGAGTCAGTCTCAGTGCGGTACAACCGACGACCAACCTGTCCCGATACATCAGTGGTTGCCCACCTTCCAACCCCCCCTCCTGCCCGACACAGGAAGAGCCACAGTCTGGGGAATAATATGATGTGTCAGTTTGGTGTGGTGGAGAGTAAAAGTGCGACATTCCCTGCAAAAGAAAAGGCTCGACACCTTCTAGACGACAGCTTCCTAGAGTCTCACAGTCCTGTCAGAAACCACACACACGATTCAGTATTTACCAACGGCATCTCACTTGGCAGTAGAGAGAGCTCTTTTAGTGATGAATTATCAAGTACAGTCGAGAGAGGACGTATGTACGCAACACTTGGTCCTAACTGGCGAGTCCCAATCTGTAACTCTCCCAGAAGCAGAAGTTATATTTATAGCACCCCAGGGGCAGTTTCCAGTTATGAATGCAGTTCTCTGAGCAGCATAACCATTGAGGGGCCCCTGCGAAGAAAGACTCTGATGAAGGAGGGTAAAAAACCCACTCTCTCATCCTGGAAGCGCTACTGGATTGTCCTTTCTGGCTCCATTCTGATCTATTTCGGTTCTAAAGCTCTAAGAGCAAATGAACGAAGACATTATAAATCCAGGCCGTGTAAAAAGATCACGCTCACAGGTTGGATGGTGGTTCTGCCAGACAACCCTGAACATCCAAACATTTTCCAGCTCACAGATCCTGACAGagGCAATGTTTACAAGTTCCAGACTGGATCACGTTTCTCTGCGATTATCTGGCACAGACATTTAGCCGAGGCGTGCAGGAGTACAAGACCACAGATACCAGCAAACCTCATGTCTTTTGAATAGCTGCTTTTTGGGAACGGAATACAAATGAAGGGAATAATTCTAATGGAGAAAGACATTTGAGGAAAGGTGGCGGCATGTTGGACCTAACTTACAGCAGTTGGAAATGTGGCAGCTGTATCTGTTGAAAAAGTCCAAAATTCATTCAGACATTATAGACAAAGCTGTACTGGGAGAAAATGGTCTTGTGCCTTTAGTTtagtggtaacactttacaataaagttctATTTGTTAACatgacttaaagggatagttcactcaaaaatgaaatgacaccCACCCTCTGGCCATCTAAGATGCACAgtagatgattttgtttcttcattagaacagatttggaaaagAATAACATCACTTACTCAGCAATGCATTCtctagtgaatgggtgccgcttctggccaaaataccagttcataatccataatatcGCTTCctccgttaaaaaaaaaatccttcccGTGTTTAGAACTGTAAATAGTGCTTGATCCAAGCAAAGTTCTCTTCTGGTTCCGGATTTTTTGCTTGAAAAAGCAATATTGTGGATACATGACTCGTGTTTTAGCTGGAAGCAAATGTGAAGTTGGTTGGAAGATAATGATAATGGCTTTGTAAATGCATTGCAGTCATTTTACATAGCATTTATCCAAATTAGTTTgttataaatgtgaaaaactgTTAATCTTATCCatgtgttatttataataaattcatgttaatttattcaatgataactaaatgttaacaaattgtTAACCTTATTGTTAGTTTTACCTTACAAACCTAAAGGTACATGTGAAATATGTTGTAAATGACatgtataaaataacattgtcCAATAGATGTCTTCATGTGATTAAGTGCCAAAATTAAGACCTTTGTAATGTTAAACCTGTTCAAATCATGTTAGATGTTAGAGGGCAGAAGTGAACACGCTAAATTATGAGCATGCATGAAGCATTTATGACAGCACTTCACAAGAGGagccaaaaaaagtgcactgtATAAAAGGGAAATCTGTAACAAAGGGAATTAGTTGCACATCGAcacaataatattgtttaattggATTATTAAACGTGTCATTTCACATGGGTATCGGGAACAAGTGCCAATGTTCATGTGGTGGTGTTCAGCTCAAAGTTATGTAGTGTATTTACTTACGGACAAAATATGAGTGATGTCTGATTGTATGTCTTGACATCATAAAGTGGGCAGGACCCAAAAAGTATATAGTTATGGATGCCGATTAGGTTTTATAGAgataatgttgtaaaatgtacatgtaaatgaAGGAAAGCAACTGTGTTTTGGTCAGAGCCATGTATAATGCATCATTGACGAAACAACGTTTTAGTGGGTGTTCAGTATTCACATTTAATACTTgtgtagtattatttttgttatttatttaaaaaggaatacaTCAAAAGgtctgtaaaaactgtaaagtACATCGCAAAGTCTAGTATTTTGCACAATCACAAACTTTTATAAGGTGTAAGAACGAGACTTCTTCCTCAAAGGTGATATTAAGGCACTAAAATGTGAAGCGTAGAATGCTTTGTATATTGCAAATTGCAAATGGAGATTATACCTTGTCTGACCTTCTGTAAATCTGGCGGAACATGCATGGATGTTTTGGactaacagttttttttgtgtcactTCAGTATCGTTGCACATGTCTACACACTGTCGAGGCATGTACAGGAACTACTCTAAGCTGTGAATCggtcatcattaaaaaaaaaacgtgtctTTGAATCTTTAAACCGTACAATTGGCTGATCACAAGAATCACTTACGACAAGATTCAAATACTTGACAAAGATGAAAGCGAAAAGCGTGTCCtccaacaataaaataaaggttgttTGTACAAGTGCTTTATTACGACCTATACGTTTTAAAAGTTAAGCGCCCAGGTGGTAAAAAGAATGACTGTGTGAATCAAattaccaatcaaaatgcgTTTTTTGCTTAAATGCAGTGTGTGGACTTTTTTTACACCGATCTCACAGTTATTGAGACATATTTTACTAGGTGTAATTCGTACACCACTAAGCCTAGCCGATacaaaaatcatgcaaaatgcTCTGATGGGTCGCATTTCAGAGATTTGCGCAGACGACCTACACGGGcgtattggttggaggacaggttggaagcaaaaaataaataaataaaataaatgctgctctcacagattttgttttgtttagaaatCACGTAAGCAACCATTTCAGCTGTGATTAGATAGCCCATCTCAGCAAGTGTTACTAAGTGGTAGCtacctcttttttctttcttttttgggttACCATACCATCTGAAAGTTCacatatttctgtgtatttctgtCCTCTGCTAATGACTGAGTTTGGATGTTCTGTTCGGTTCTCACAACGTGATGTCACTGAATCTTTATATGGTCTATAATGAGCCTAGACCTTTTACTAACTCGGTACTTTTGTGTTTGGTGTTTTGTCTTTATGGAAATATATGCCTAATGAAACAAA

Function

symbol description
ralgps1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be located in cytoplasm and plasma membrane. Orthologous to human RALGPS1 (Ral GEF with PH domain and SH3 binding motif 1).

NR:

description
PREDICTED: ras-specific guanine nucleotide-releasing factor RalGPS1 isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
K24023 RALGPS; Ras-specific guanine nucleotide-releasing factor RalGPS

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247697.1 True 4756 mRNA 0.42 21 15307737 15390751

Neighbor

gene id symbol gene type direction distance location
zgc:194839 LOC107659596,LOC107686408,LOC107723116,LOC107723115,LOC107575379,LOC107723246,LOC107723230,LOC107667514,LOC107570299 coding downstream 7014 15297625 ~ 15300723 (-)
LOC122350063 rfesd,LOC107711828,LOC559859,LOC107580528 coding downstream 114801 15190586 ~ 15192936 (-)
si:dkey-164f24.2 LOC107667555,LOC107723247,LOC107570302,LOC107711905 coding downstream 119093 15180268 ~ 15188644 (-)
lipg LOC107738997,LOC107565987,LOC107711901,LOC107686385,LOC107599989,LOC107667539 coding downstream 142676 15160154 ~ 15165061 (-)
ipo11 ipo11 coding downstream 161310 15026090 ~ 15146427 (-)
LOC122350755 zbtb34,LOC107723248,LOC107550586,LOC107727329,LOC107564041,LOC107727326 coding upstream 2598 15393349 ~ 15407170 (-)
lmx1bb lmx1bb,lmx1b,LOC107550585,LOC107723253,LOC107753135,LOC107564042 coding upstream 105742 15496493 ~ 15509195 (-)
LOC122350591 lmx1b,lmx1bb,LOC107550585,LOC107723253,LOC107564042,LOC107753135,LOC108434405 coding upstream 187357 15578108 ~ 15648322 (-)
pbx3b pbx3b,pbx3,LOC107550583,LOC107669256,LOC107555108,LOC108434408 coding upstream 443214 15833965 ~ 15948783 (-)
LOC122351126 pbx3b,pbx3,LOC107550583,LOC107669256,LOC108434408,LOC107555108 coding upstream 576749 15967500 ~ 15992258 (-)
G64359 hmcn2,LOC107570300,LOC107723245,LOC107659581 non-coding downstream 11516 15295350 ~ 15296221 (-)
G64357 hmcn2,LOC107659581,LOC107723245,LOC107580106 non-coding downstream 14752 15292345 ~ 15292985 (-)
G64356 hmcn2,LOC107570300,LOC107723245,LOC107659581 non-coding downstream 17246 15290269 ~ 15290491 (-)
G64355 NA non-coding downstream 18545 15288911 ~ 15289192 (-)
G64354 NA non-coding downstream 21928 15285600 ~ 15285809 (-)
G64409 NA non-coding upstream 260885 15651636 ~ 15651859 (-)
LOC122351100 NA non-coding upstream 376917 15767668 ~ 15781887 (-)
G64476 gapvd1,LOC107669250,LOC107753155,LOC107555093,LOC107723237,LOC107550582 non-coding upstream 672128 16062879 ~ 16063753 (-)
LOC122351008 NA non-coding upstream 688611 16079362 ~ 16094560 (-)
G64481 NA non-coding upstream 740860 16131611 ~ 16132812 (-)
G64353 hmcn2,LOC107723245,LOC107659581,LOC107570300 other downstream 23607 15283861 ~ 15284130 (-)
G64228 NA other downstream 526027 14779531 ~ 14781710 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other downstream 576346 14723712 ~ 14731391 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other downstream 852494 14385600 ~ 14455243 (-)
G63933 LOC107556304,LOC107751435,LOC107594508 other downstream 1444487 13809428 ~ 13863250 (-)
mvb12bb mvb12b,LOC107550570,LOC107753158,LOC107723228 other upstream 258475 15649226 ~ 15700896 (-)
LOC122350093 NA other upstream 1017083 16407834 ~ 16409696 (-)
LOC122350945 drd2b,LOC107745132,LOC107705176,LOC107691748,LOC107664308,LOC107600777,LOC107556418,LOC108428674 other upstream 1655716 17046467 ~ 17096795 (-)
LOC122350953 NA other upstream 1929625 17320376 ~ 17401228 (-)
zgc:194007 NA other upstream 1968634 17359385 ~ 17361850 (-)

Expression


Co-expression Network