fmodb (fmodb,LOC107683908,LOC107747218,LOC107726688,LOC107575999,LOC107702840)


Basic Information

Item Value
gene id fmodb
gene name fmodb,LOC107683908,LOC107747218,LOC107726688,LOC107575999,LOC107702840
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 19572311 ~ 19577890 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247731.1
GTAGACAAAGCTTCACTGTATACAGGCTTTACACCGAGGGCTCTGGGCTGTGCGACTGTATCCATCTACTGGAATgtgatttattgtattaatgCTGTAAAAGCAGCTGTACGGGGCACGTTATTATAAgCAAGTGAAGAACACAAAAAgggacaaaaagacaaaaaccaAAGCAGAGGCTGCAATCACAGGAACTGTCTCAGTAACAATGAAAGGCTGGATTTTACTTCTGTTGGTGGCAAAGCTTGTTAATTTGTCTATGACACATCCGACCAACTCGTTGACCTGGCTAAGTTATCTGCGCAACCGAGCCTACAGTCACGGTTATGGCCGCAGTCACAATAACATCCACGCCTCTCTAAGAGCAGAGGATGTGGATGAGCCTCCTGCACCGGACTGTCCTTTGGAGTGCGACTGCCCTCCTTCCTACCCCAGTGCGATGTACTGCAACAACCGCAAACTGCAGCACGTCCCGTTTGTCCCATCTCACATCAAGTATGTATACCTGCAAAACAACCAGATCACGACCATCAAAAATGGAGTCTTCGATAATGCTCCAGATTTAGCTTGGATCAGCCTACACACAAATAAACTGAACTCTGACAAGATTGGTGACAAAGTCTTCGCCAAACTACCAAACCTCGAGCGCCTCTTTTTACACAACAACAACCTGAGTCGGGTTCCACAGGATTTACCACGTTCCCTACGATATGTATACATGAATCATAACAATATCTCAAAGGTGCCGGTCCAATCTTTCCGTGGAATGAGAAACCTGACCGCCCTGCACCTTCAAGTGAACGCCATTGAAGACCTCGGCAATGCACTTGAGGGTCTGCATTCCTTGACCCTGTTAGACTTACGAGTAAACCGACTGAAGAAGATCCCCGAAAGCCTGCCGCCAAAGCTGAGCCAGCTCTACCTCGAGTACAACCGCATATCCAGCGTTCCTGCTGATTTTCTGAGCCAGCGGCCTGAGCTGCGCTTCATACGTCTGTCCCACAACCAGCTGACCAACGGGGGGATTCCAGCCAACGCTTTCAATGTCAGCACTCTCGTAGAGCTCGATTTATCCTTTAACAAGCTGGAAAGGATTCCCACTATTAGCACCAGTCTGGAGAATCTCTATCTGCAGGCCAACAAGATCAAAGaattctcaGTGAGCAGCTTCTGCAGAGTTGTGGATACAAACAATTACTCTAATCTGCGTGTACTGCGCTTGGAGGCCAACGAAATTAAAGCCCAAGACATACCGACTGAAGCTGTACTGTGTCTGCGCCTGGCAACCAACATCGACCTGTAGGCCTGACATCAGCACATCCACAGAAACCTACTGTCAGACATGAGCACACGGAGCAAGAGAGAGAACATCTTGGAAATAAGGGTTTAGTTATCTTTTCGACAGTAAAATGATTGTGGGGGTtgtaataagtaaaaatatcaCGTCTTGCAGtatcaaaagaaaatatgtacGAATAATGATGATACCATTACAAAACCATGTGTTTTTTGTCTGTGAATAAGCCTGGGAATTTTGATATGGGTATCTTAAAATCAATGTGAATGTCTGattacaaactattttattactGAATCAATAAGGACAGGAATGCATGGAAGCTCATTTCTgtctcattataaaaatatcaaaaaggtaattgcaaatttgatttgcatatttacatttttattttctaattctgaaaaaaagtaacTGGAGATATAATTTGCAACTGCAAGAAAATAAATTGCTAGAAACAAAGTTACAATTACCCATTTGATACATATATTCTGaaacagaattgtgagaatttttttttttttaccttattctCTAACGTTTGAATTATGAGCTCATTTTTGTATTAGCTAAAATTCATTTATCTTTAACTTTTTAGTAAATGCATGATACAAATAATGGTGTTGGTTGGGAAActttgggttttgttttgtaattgttaGCCAGTATTTTTGGAAGTGGAAAAAGATAAATTGCCCGAAGGTCAATTTAATTGGTTAGTCAATGAGGATGACCTCATGAAAATCTAACTGAAAACTGAGGAAAGATCAA

Function

symbol description
fmodb Predicted to be located in collagen-containing extracellular matrix and extracellular region. Predicted to be active in extracellular space. Is expressed in median fin fold and pectoral fin. Orthologous to human FMOD (fibromodulin).

NR:

description
PREDICTED: fibromodulin isoform X1

GO:      GO:0005578

KEGG:

id description
K08121 FMOD; fibromodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247731.1 True 2071 mRNA 0.42 4 19572311 19577890

Neighbor

gene id symbol gene type direction distance location
mapkapk2b mapkapk2b,LOC107683909,LOC107550950,LOC107726784,LOC107747217,LOC107576554 coding upstream 1078 19567279 ~ 19571233 (+)
csf1b csf1b,LOC107683886,LOC107747213,LOC107702844 coding upstream 95655 19464595 ~ 19476656 (+)
ren ren,LOC107747224,LOC107727110,LOC107570508,LOC107550929 coding upstream 115555 19451487 ~ 19456756 (+)
kdm5c LOC107747206,LOC107550909,LOC107683899,LOC107570512,LOC107724909,LOC107702826 coding upstream 148499 19406564 ~ 19423812 (+)
iqsec2b iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC107570507,LOC107550910,LOC107725888 coding upstream 166827 19347902 ~ 19405484 (+)
LOC122350022 NA coding downstream 4422 19582312 ~ 19583244 (+)
LOC122350024 LOC107683897,LOC107735514 coding downstream 11694 19589584 ~ 19590513 (+)
LOC122350025 LOC107683897,LOC107735514 coding downstream 18688 19596578 ~ 19600117 (+)
adrb3a adrb3a,LOC107683881,LOC107740977,LOC107550948,LOC107569580,LOC107724439,LOC107702835 coding downstream 86238 19664128 ~ 19684051 (+)
npm2a npm2a,LOC107550946,LOC107740978,LOC107683882,LOC107724550,LOC107702849,LOC107569577 coding downstream 110995 19688885 ~ 19691294 (+)
G65268 NA non-coding upstream 13142 19558873 ~ 19559169 (+)
G65267 NA non-coding upstream 13825 19557544 ~ 19558486 (+)
G65119 NA non-coding upstream 90268 19405656 ~ 19482043 (+)
G65111 NA non-coding upstream 146589 19424019 ~ 19425722 (+)
G65074 NA non-coding upstream 338927 19224569 ~ 19233384 (+)
G65284 NA non-coding downstream 116490 19694380 ~ 19752601 (+)
G65295 rab11fip1,LOC107579780,LOC107683894,LOC107724309,LOC107565115,LOC107740979 non-coding downstream 181580 19759470 ~ 19780752 (+)
G65361 NA non-coding downstream 362217 19940107 ~ 19940869 (+)
G65403 LOC107702858,LOC107723482 non-coding downstream 462056 20039946 ~ 20040563 (+)
G65402 NA non-coding downstream 472077 20049967 ~ 20053522 (+)
pqbp1 pqbp1,LOC107702814,LOC107683912,LOC107747222 other upstream 298541 19272092 ~ 19273770 (+)
LOC122350733 LOC107702875,LOC107722994,LOC107591954,LOC107573969,LOC107722996,LOC107691581 other upstream 370624 19199988 ~ 19201687 (+)
G65105 LOC107747205,LOC107550912,LOC107683889,LOC108412149 other upstream 420006 19119944 ~ 19152305 (+)
G65100 sf3a1,LOC107564451,LOC107550953 other upstream 476240 19094947 ~ 19096071 (+)
si:ch211-158d24.2 si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137 other upstream 850065 18695454 ~ 18722246 (+)
rfk rfk,LOC107740987,LOC107723557 other downstream 452144 20030034 ~ 20033607 (+)
timm17b timm17b,LOC107722912 other downstream 557229 20135119 ~ 20139364 (+)
LOC122350816 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC107756821,LOC107566956 other downstream 845391 20423281 ~ 20431832 (+)
rnf122 si:ch1073-392o20.1,rnf122,LOC107747807,LOC107678386,LOC107698113,LOC108440685,LOC107563167 other downstream 1380710 20958600 ~ 20972040 (+)
ankrd39 LOC107721080,LOC107678427,LOC107559444 other downstream 1624558 21202448 ~ 21204346 (+)

Expression


Co-expression Network