calr (calr,LOC107548191,LOC107743868,LOC107699587,LOC107657889,LOC107752434,LOC108265943)


Basic Information

Item Value
gene id calr
gene name calr,LOC107548191,LOC107743868,LOC107699587,LOC107657889,LOC107752434,LOC108265943
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8417430 ~ 8422195 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247751.1
CAGCCATCTGTTCCCAGTCTAGAGGCGAGACTGAGCGAAAGAGAGCAGCGCACAGTGATTTCTGCAGagcatatattttttactgcAAAGATGACAGCGTTGTCTCTACTGTTTATGAGCGTGTCCATCGCTTTAATAACTGCAGAATCATCTGTTTATTTCCGAGAGCAATTCGAAGACGGTGACACCTGGAGGAGCCGATGGGTGGAATCCAAGCATAAATCAGACTACGGGAAGTTTGTGCTCTCTGCAGGCAAATTTTATGGCGATGCCGAGAAAGATAAGGGTCTTCAGACCAGTCAGGATGCTCATTTCTACGCGCTGTCGGCCCGCTTCGCTGATTTCAGCAACAACGATCAGCCCCTTGTGATCCAGTTCAGTGTAAAACATGAGCAGAGCATTGACTGTGGTGGAGGCTACATCAAACTTTTCCCATCAGACCTCAAACAGGAAGATATGCATGGAGACTCCACATATAATATCATGTTTGGTCCTGACATCTGTGGCCCTGGAACCAAGAAAGTACATGTCATTTTCAATTACAAAGGCAAAAATCATTTGATCAACAAAGACATTAGATGCAAGGATGATGAATACACCCATCTGTATACGTTAATTGTCAATCCTGACAACACTTATGAAGTCAAGATTGATAATAAGAAGGCGGAGTCTGGATCTTTGGAAGAAGACTGGGACTTCCTGCCTCCCAAAAAGATCAAAGATCCCGAAGCGAAAAAACCTGAGGACTGGGACGAGAGAGAGAAGATCGACGACCCTGATGACAAGAAACCAGAGGACTGGGACAAACCTGAGAACATCCCTGATCCTGATGCCAAGAAGCCTGATGACTGGGATGATGAGATGGATGGGGAGTGGGAGCCGCCCATGGTCACCAATCCAGAATACAAGggTGAGTGGAAACCCCGCCCCATTGAGAATCCTGCTTACAAGGGGAAATGGGTGCACCCTGAGATTGATAACCCGGAGTACACCGCTGACAACGAAATCTATAAATACGATAGCATCGGAGTGATTGGACTGGACCTGTGGCAGGTAAAATCTGGCACAATTTTTGACAACTTCCTTATCACCAATGACCCTAAGGTGGCAGAAGAGGTTGGCAACGAGACTTGGGGTGCCACAAAGGATGCTgagaagaagatgaaggaaggtcaagaggaggaagagagaaagaagcgtgaggaagaggaaaagacaagaaagGAGGAGGCAAaggatgaggaggaagaagaaaaggaagaggaagaagaggaggaggaggaggaagaggaagaagaagaggaggaggaggaggaagaggaaacaGACTCTAAACTCAAAGACGAGTTGTAGATTTCAACAGGAACTTGTGAAGAAATGCCCCATGACTAATGGGGTGCAAGGCAGAGAACTGGACTAATGCTGGACATTCCTTTTTGTTGTGTGTCGGATGATTCCGgcaggatttatttttttgtctcatttcactactACAAACCTATTTAtagattaacttttttttcataatttttcatttgcatgATGTTAAGCAAAGTCCCAAGCGTTTTCAGTCGGGCGGGGTTGAAGGCAGCCAACATGAAAATCGTACATCCCCATCTGTAGTGTGAGATGTGATCCATAAAAAAATTCAACGCTCATGTTTACATATGTCAGATATCCTGTTTGCTAAGCAATTCTGTGACACGAAACTTGAATCATAACAGTCATCAACTGGTAGCTACATTACACTAGAATAATTACCTCAAAAAACATTGACGTTATctattttattgattatatgGAGCAATTTTGAGGTACTGTTGCTGCCATTTCATTACCATTTCACTTCTGTTACAGAATATGCAGAGTTGTTTAGATGTCATTTCATCTGTAGCATTTTGGCTTGACCAAGTtttgcgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggtttgaGAGAGTCCTCACTTTATTGCATGTTTCATCTTAACCCAAACCTCAAATTCATAACCTTTTCCTCGCTCTAAATATCAGTCTATCAGTGGCCAAGTTAAAATCTCGGTCGTGTACTTTCCTAACACACTGTGGATCTCACAAGCTGATCAGTTTTTATCTTTTCCTGGTCAGCAAGCAAATTTTGACTGGTTTCTCAAGAGTAGAAATGAATTTCCTATTCTGGTTGACCGAATATTTGGAGAAAGTCAATTAATATCAACAATGATTTCTGAGTAGCTACAAAGCTCTTGTGTGTTTGCTTTGGTTCTTTTCTTTAAGTGAATCGCTGGTTTATTGAATTTGGCAGATACGGTTATCAGACCCAAGCTGAACCTGTGGAGTGTGGGGAAAAATGGAAAGCTTGTGAGATTTCAGGAGTGTTACAAAGAAAGTTCCATAGCGATTCTAGTAACTCTTCTGCTCTCCAACAGAGATTTCACAGCCATTGTGAATATTGCACTGCTGTACTGCTTCAATCAGATACTTCTCCCAGCAAAATAGATtgtgaccttttttttaaagatatattttgtactttttgtgttTGAAGGATGTTCCTTGACATATTGAGAAGAAAAGCTCTAGTATGAAAGTTGTTGTCcaataataaaagtacaaaaggaGTAATATA

Function

symbol description
calr Predicted to enable calcium ion binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including hatching gland; nervous system; notochord; polster; and trigeminal placode. Human ortholog(s) of this gene implicated in essential thrombocythemia; myelofibrosis; sideroblastic anemia; and thrombocytosis. Orthologous to human CALR (calreticulin).

NR:

description
calreticulin-like

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K08057 CALR; calreticulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247751.1 True 2642 mRNA 0.42 10 8417430 8422195

Neighbor

gene id symbol gene type direction distance location
ttc39a ttc39a,LOC107657886,LOC107752432,LOC107599797,LOC107743871,LOC107548186,LOC107699571 coding downstream 25936 8372657 ~ 8391494 (-)
rnf11b rnf11b,rnf11,LOC107599796 coding downstream 45693 8356847 ~ 8371737 (-)
faf1 faf1,LOC107743872,LOC107707577 coding downstream 71409 8285231 ~ 8346021 (-)
dmrta2 dmrta2,LOC107657863,LOC107707574,LOC107699532,LOC107743899,LOC106613895 coding downstream 142031 8272484 ~ 8275399 (-)
agbl4 agbl4,LOC107603279,LOC106613892 coding downstream 280155 8036622 ~ 8137275 (-)
tor3a tor3a,LOC107657890,LOC107548256,LOC107699619,LOC107743897,LOC107599799,LOC107752435 coding upstream 544 8422739 ~ 8426706 (-)
LOC122351129 NA coding upstream 5420 8427615 ~ 8427687 (-)
LOC122351128 NA coding upstream 6630 8428825 ~ 8428904 (-)
LOC122351132 NA coding upstream 7058 8429253 ~ 8429320 (-)
LOC122351131 NA coding upstream 7279 8429474 ~ 8429544 (-)
LOC122351107 NA non-coding downstream 148213 8253538 ~ 8269217 (-)
G61967 NA non-coding downstream 443410 7879417 ~ 7974020 (-)
LOC122350891 NA non-coding downstream 462788 7951561 ~ 7954642 (-)
G61965 NA non-coding downstream 638866 7749703 ~ 7778564 (-)
G61959 NA non-coding downstream 754171 7662217 ~ 7663259 (-)
G62076 NA non-coding upstream 5090 8427285 ~ 8430135 (-)
G62120 NA non-coding upstream 85696 8507891 ~ 8508123 (-)
LOC122350893 NA non-coding upstream 289842 8712037 ~ 8739953 (-)
G62239 NA non-coding upstream 491287 8913482 ~ 8914004 (-)
G62235 NA non-coding upstream 496563 8918758 ~ 8920904 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other downstream 877 8392345 ~ 8416553 (-)
LOC122350139 elavl4 other downstream 184656 8117008 ~ 8232774 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other downstream 729868 7677496 ~ 7687562 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other downstream 1314437 7091450 ~ 7102993 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other downstream 1361001 6875349 ~ 7056429 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other upstream 225075 8647270 ~ 8649983 (-)
pola2 pola2,LOC107599808,LOC107657899 other upstream 230109 8652304 ~ 8657286 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 835048 9257243 ~ 9262826 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 1278199 9700394 ~ 9708621 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other upstream 1532486 9954681 ~ 9969485 (-)

Expression


Co-expression Network