LOC122350969 (sncaip,LOC107577394)


Basic Information

Item Value
gene id LOC122350969
gene name sncaip,LOC107577394
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 966169 ~ 980033 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247757.1
gggcCGCGCGCGTGTCGTGGCCGCGCGCGCTGAGGAGGCTGAAGGAGGCGCGCGCTCGCGTCACATTCTTCAGATGATCCGTTAATAATCACCAGAAACACCGACAGACGATCAGCGGAGCGGCGACACACGGCAGCGGGAACGAgaaTGCTGACTGAAGATGGACGTTCCTGAATACCTGGATCTGGATGAGATTGACTTCACGGATGATTTACCTTACTCGTCCAAGAGTATTCCTGAGCTGTGCCGGAGACACGATGGAGCGGCCGACGAGAGACAAGttttGGTTTCAGCTCCGTCTATTAACTGGGCTCGCAGCGCGCTGTCCGGCGGAGCGGGAATCAAACCCACCGGCATCGCCGACGTCTACAGCAAGTTCCGTCCGGTCAAGCGCGTGTCTCCGCTCAAACACCAGCCGCAGGAGTCTGACCCCGAGACCGAGGCCAAGAGCGCCGAGGCCGGTAAGAGCCGAGGCCTGCCGCTGCTGGGAGAGCTGGAGCACTACGACCTGGACATGGACGAGATCCTGGACGTGCCCTACATCAAGTCCGAGAAGAGGAGCGCGGCCGCGGTGAAAGACAGCCTCCTGTCGCCCGTCAGCTGGCCCGACGTCAGGAAGCCCCGGCCGGATCAGGACGGGCTCCGGGCCCCGGGTGCTCACGGGTCAGAGCCGGACGCTCTTCTCTCCGACAAAGCCGACGGCGGCCCGAGCGCCTTCCCTCTCCCGCCGAGGCAGGACAAGCCCTGGAGGACGTTTGGAGAAGCGGACGAGGAAAGCAAGAAGACCCAGAACATCCTGAACATCGTGAGAGAAGGACAGATCTCGCTGCTGCCTCACTTCGCGGCGGAGAACCTGGAGCTCATCCGAGACGAGGACGGGAACAACCTGCTCCATGTGTCTGCGGCTCAGGGTCACACCGACTGCCTGCAGCACCTCACCTCGCTAATGGGCGAGGACTGCCTTAACGAACGCAACACACAGCAGCTGACGCCCGCCGGCCTCGCCGTCAggaatggTCATCTGGAGTGTGTGCGCTGGATGGTGAGTGAAACCGAAGCCATCGCCGAGCTCAGCTGTACTCGTGAACATCCCAGCCTCATCCACTACGCCGCGAGACACGGAcagGAGCGGGTGCTGCTGTGGCTGCTTCAGTTCATGCAGGAGCAGGGCATCTCTCTGGACGAGGCGGATCAGAACGGGAACACAGCGGTTCATGTGGCGGCTCAGTTCGGACATCTCAGCTGTGTTCAGACTCTGGTGGAGTACGGCTCAAACGTGACGGTGCAGAACCAGCAGGGCGAGCGTCCGTCCCAGAGTGCCGAGCGGCAGGGTCACAGCACCTGCTCCAGGTATCTGGTGGTGGTGGAGACCTGCATGTCTCTGGCCTCGCAGGTGGTCAAACTGACCAAACAACTGCACGAACAAACGACGGCGCGAGTCGCTCTTCAGAATCAGCTTCATCTGCTGCTGCAGACTCACGAGCTGAACGGCAGACCGCCCTCACCCAGCTCTCACGTCGAGTCGTGGCCGGAGATGATCTTGTCGGCCGAAGCGGCTCCTGATAACGGTCAGTGGACGCTGAAGCAGAGACACATGGACTCGGACGCCGGCCAGCGCAAGCTTCTGGGGGAGGCGGGGCCTGCAGCCGGACCAATGAGACGGCTGGGGCCAGGCGAGAGGCGGGAACTCAAGCTGGCTCGTCTCAAGCAGATCATGCAGCGCTCTCTCAGCGAATCAGACGCAGAAGAGTCCAAAGCGCCCGGCCCCGAGCGGCCCACGCAGCTGTCCATCGCGGAGCCCGACGAGAACAAGCACAAGTTCTCCTTAACCCACAGAACTTCCAAACCCGCGGACGCCTGCAACCCGTCTCCGTCGTCTGACCACAGCGACCCGGAAACCAAGAGCGAAGAGCTTCCCGACGGCCAGAAGCTCACCACCAGTCCCAAGAGCGCCCTCAAGTCCCCGTCGTCTCGCAGGAAGACCTCGCAGAACCTCAAGCTGAGGGTGACGTTTGACGAGCCGCCGCGGAAAGACGGACCGGCGCCGGACGCCAAAGCCCCGTCCGGGAAAGACAAGCCGGAGTCCGGCAAACGAGCGTTCGGGACGTTCCGCTCCATCATGGAGACCCTGAGCGGGAACCagaacagcaacaacaacaacgctCCGAGCGCCAAGAAGAGCGAGTCCAAGAGCAGAAACAAGACGAGCGCCGTTTAAAGCGGCTCCGAGACCCGTCTCGTTTCTGACGTCAGTGTCTAAACGTTCTCCGACTGGActcaaaaaaatgcttttctggCTCGTTTTCAGCCTAAATGtcttcttaaatcaagaaggagtGAAAACGTGgtcttgttttcagagaaaCCGGTTCTTGCTGTTTTCTGGCAGATGATTCAGCTTGCTCGaagcaaacattttattctgaaaacaagacctgaatccttctttcttttaagaaTTTCGAGACGTTTTGTCTGGAAACAAGACGAAAAAATCTAAGctagaaaagtgttttttgcagtgtatagagatattaaaagtagttttcaaatgttgttagtttttgcttaataaaagcagaaatatcTGCCAGTGGGGCAAGAAAACTAATCCAGTTATTATCACCCCGCTGAGAGAGGTTTTTCTCCTTTGTATTAATTGAAAACGATGCTCAGTATATTTGGACTCGTCGAGTGAATTCATCTCCACTCgagaatgtttagatatttctGCTGGAAAACGAGATGAAGGTCTTTATTTGCTGTGTACATGagaacacactttcacacatgTGCCGTTTTGCAAATACTGTGATTTCTGTACAGACTCGCTGATCGAAACCAAGCACGgacgaacgaacgaacgaatcACGTTCATCACGAAACGATTCAGTGCACAGAGCTCTTGAAGAATCCACCTTCAGTTTTCGTAACTCTAATACGTTTATATGTAACCTgtcttgttttttgttaaagTATGGGTTTATAATTTAACTGTTACGTTTGAACGCAAGAAACGCGGTATTATTGGAATCATTGTAACGACGTTTGgccattttttcaaataaagacGTTTCCAGCTGAGCTCAGTGTTACACGAGGGACGAAATGTTCAGAATTATGAAAATAGATGCAAGCCTGAAAAATCCACTTTTAACCTCGAGCGGAAAGTTTGTGATCCATGCcgttaaatgtcaaaaatgaatCTTGTTTTGTGAACCTCCTTAAACGAGAAGATTCGCCGCGAATAAAATCATTCtcttgttttctagta
>XM_043247759.1
gggcCGCGCGCGTGTCGTGGCCGCGCGCGCTGAGGAGGCTGAAGGAGGCGCGCGCTCGCGTCACATTCTTCAGATGATCCGTTAATAATCACCAGAAACACCGACAGACGATCAGCGGAGCGGCGACACACGGCAGCGGGAACGAgaaTGCTGACTGAAGATGGACGTTCCTGAATACCTGGATCTGGATGAGATTGACTTCACGGATGATTTACCTTACTCGTCCAAGAGTATTCCTGAGCTGTGCCGGAGACACGATGGAGCGGCCGACGAGAGACAAGCTCCGTCTATTAACTGGGCTCGCAGCGCGCTGTCCGGCGGAGCGGGAATCAAACCCACCGGCATCGCCGACGTCTACAGCAAGTTCCGTCCGGTCAAGCGCGTGTCTCCGCTCAAACACCAGCCGCAGGAGTCTGACCCCGAGACCGAGGCCAAGAGCGCCGAGGCCGGTAAGAGCCGAGGCCTGCCGCTGCTGGGAGAGCTGGAGCACTACGACCTGGACATGGACGAGATCCTGGACGTGCCCTACATCAAGTCCGAGAAGAGGAGCGCGGCCGCGGTGAAAGACAGCCTCCTGTCGCCCGTCAGCTGGCCCGACGTCAGGAAGCCCCGGCCGGATCAGGACGGGCTCCGGGCCCCGGGTGCTCACGGGTCAGAGCCGGACGCTCTTCTCTCCGACAAAGCCGACGGCGGCCCGAGCGCCTTCCCTCTCCCGCCGAGGCAGGACAAGCCCTGGAGGACGTTTGGAGAAGCGGACGAGGAAAGCAAGAAGACCCAGAACATCCTGAACATCGTGAGAGAAGGACAGATCTCGCTGCTGCCTCACTTCGCGGCGGAGAACCTGGAGCTCATCCGAGACGAGGACGGGAACAACCTGCTCCATGTGTCTGCGGCTCAGGGTCACACCGACTGCCTGCAGCACCTCACCTCGCTAATGGGCGAGGACTGCCTTAACGAACGCAACACACAGCAGCTGACGCCCGCCGGCCTCGCCGTCAggaatggTCATCTGGAGTGTGTGCGCTGGATGGTGAGTGAAACCGAAGCCATCGCCGAGCTCAGCTGTACTCGTGAACATCCCAGCCTCATCCACTACGCCGCGAGACACGGAcagGAGCGGGTGCTGCTGTGGCTGCTTCAGTTCATGCAGGAGCAGGGCATCTCTCTGGACGAGGCGGATCAGAACGGGAACACAGCGGTTCATGTGGCGGCTCAGTTCGGACATCTCAGCTGTGTTCAGACTCTGGTGGAGTACGGCTCAAACGTGACGGTGCAGAACCAGCAGGGCGAGCGTCCGTCCCAGAGTGCCGAGCGGCAGGGTCACAGCACCTGCTCCAGGTATCTGGTGGTGGTGGAGACCTGCATGTCTCTGGCCTCGCAGGTGGTCAAACTGACCAAACAACTGCACGAACAAACGACGGCGCGAGTCGCTCTTCAGAATCAGCTTCATCTGCTGCTGCAGACTCACGAGCTGAACGGCAGACCGCCCTCACCCAGCTCTCACGTCGAGTCGTGGCCGGAGATGATCTTGTCGGCCGAAGCGGCTCCTGATAACGGTCAGTGGACGCTGAAGCAGAGACACATGGACTCGGACGCCGGCCAGCGCAAGCTTCTGGGGGAGGCGGGGCCTGCAGCCGGACCAATGAGACGGCTGGGGCCAGGCGAGAGGCGGGAACTCAAGCTGGCTCGTCTCAAGCAGATCATGCAGCGCTCTCTCAGCGAATCAGACGCAGAAGAGTCCAAAGCGCCCGGCCCCGAGCGGCCCACGCAGCTGTCCATCGCGGAGCCCGACGAGAACAAGCACAAGTTCTCCTTAACCCACAGAACTTCCAAACCCGCGGACGCCTGCAACCCGTCTCCGTCGTCTGACCACAGCGACCCGGAAACCAAGAGCGAAGAGCTTCCCGACGGCCAGAAGCTCACCACCAGTCCCAAGAGCGCCCTCAAGTCCCCGTCGTCTCGCAGGAAGACCTCGCAGAACCTCAAGCTGAGGGTGACGTTTGACGAGCCGCCGCGGAAAGACGGACCGGCGCCGGACGCCAAAGCCCCGTCCGGGAAAGACAAGCCGGAGTCCGGCAAACGAGCGTTCGGGACGTTCCGCTCCATCATGGAGACCCTGAGCGGGAACCagaacagcaacaacaacaacgctCCGAGCGCCAAGAAGAGCGAGTCCAAGAGCAGAAACAAGACGAGCGCCGTTTAAAGCGGCTCCGAGACCCGTCTCGTTTCTGACGTCAGTGTCTAAACGTTCTCCGACTGGActcaaaaaaatgcttttctggCTCGTTTTCAGCCTAAATGtcttcttaaatcaagaaggagtGAAAACGTGgtcttgttttcagagaaaCCGGTTCTTGCTGTTTTCTGGCAGATGATTCAGCTTGCTCGaagcaaacattttattctgaaaacaagacctgaatccttctttcttttaagaaTTTCGAGACGTTTTGTCTGGAAACAAGACGAAAAAATCTAAGctagaaaagtgttttttgcagtgtatagagatattaaaagtagttttcaaatgttgttagtttttgcttaataaaagcagaaatatcTGCCAGTGGGGCAAGAAAACTAATCCAGTTATTATCACCCCGCTGAGAGAGGTTTTTCTCCTTTGTATTAATTGAAAACGATGCTCAGTATATTTGGACTCGTCGAGTGAATTCATCTCCACTCgagaatgtttagatatttctGCTGGAAAACGAGATGAAGGTCTTTATTTGCTGTGTACATGagaacacactttcacacatgTGCCGTTTTGCAAATACTGTGATTTCTGTACAGACTCGCTGATCGAAACCAAGCACGgacgaacgaacgaacgaatcACGTTCATCACGAAACGATTCAGTGCACAGAGCTCTTGAAGAATCCACCTTCAGTTTTCGTAACTCTAATACGTTTATATGTAACCTgtcttgttttttgttaaagTATGGGTTTATAATTTAACTGTTACGTTTGAACGCAAGAAACGCGGTATTATTGGAATCATTGTAACGACGTTTGgccattttttcaaataaagacGTTTCCAGCTGAGCTCAGTGTTACACGAGGGACGAAATGTTCAGAATTATGAAAATAGATGCAAGCCTGAAAAATCCACTTTTAACCTCGAGCGGAAAGTTTGTGATCCATGCcgttaaatgtcaaaaatgaatCTTGTTTTGTGAACCTCCTTAAACGAGAAGATTCGCCGCGAATAAAATCATTCtcttgttttctagta
>XM_043247760.1
gggcCGCGCGCGTGTCGTGGCCGCGCGCGCTGAGGAGGCTGAAGGAGGCGCGCGCTCGCGTCACATTCTTCAGATGATCCGTTAATAATCACCAGAAACACCGACAGACGATCAGCGGAGCGGCGACACACGGCAGCGGGAACGAgaaTGCTGACTGAAGATGGACGTTCCTGAATACCTGGATCTGGATGAGATTGACTTCACGGATGATTTACCTTACTCGTCCAAGAGTATTCCTGAGCTGTGCCGGAGACACGATGGAGCGGCCGACGAGAGACAAGttttGGTTTCAGCTCCGTCTATTAACTGGGCTCGCAGCGCGCTGTCCGGCGGAGCGGGAATCAAACCCACCGGCATCGCCGACGTCTACAGCAAGTTCCGTCCGGTCAAGCGCGTGTCTCCGCTCAAACACCAGCCGCAGGAGTCTGACCCCGAGACCGAGGCCAAGAGCGCCGAGGCCGGTAAGAGCCGAGGCCTGCCGCTGCTGGGAGAGCTGGAGCACTACGACCTGGACATGGACGAGATCCTGGACGTGCCCTACATCAAGTCCGAGAAGAGGAGCGCGGCCGCGGTGAAAGACAGCCTCCTGTCGCCCGTCAGCTGGCCCGACGTCAGGAAGCCCCGGCCGGATCAGGACGGGCTCCGGGCCCCGGGTGCTCACGGGTCAGAGCCGGACGCTCTTCTCTCCGACAAAGCCGACGGCGGCCCGAGCGCCTTCCCTCTCCCGCCGAGGCAGGACAAGCCCTGGAGGACGTTTGGAGAAGCGGACGAGGAAAGCAAGAAGACCCAGAACATCCTGAACATCGTGAGAGAAGGACAGATCTCGCTGCTGCCTCACTTCGCGGCGGAGAACCTGGAGCTCATCCGAGACGAGGACGGGAACAACCTGCTCCATGTGTCTGCGGCTCAGGGTCACACCGACTGCCTGCAGCACCTCACCTCGCTAATGGGCGAGGACTGCCTTAACGAACGCAACACACAGCAGCTGACGCCCGCCGGCCTCGCCGTCAggaatggTCATCTGGAGTGTGTGCGCTGGATGGTGAGTGAAACCGAAGCCATCGCCGAGCTCAGCTGTACTCGTGAACATCCCAGCCTCATCCACTACGCCGCGAGACACGGAcagGAGCGGGTGCTGCTGTGGCTGCTTCAGTTCATGCAGGAGCAGGGCATCTCTCTGGACGAGGCGGATCAGAACGGGAACACAGCGGTTCATGTGGCGGCTCAGTTCGGACATCTCAGCTGTGTTCAGACTCTGGTGGAGTACGGCTCAAACGTGACGGTGCAGAACCAGCAGGGCGAGCGTCCGTCCCAGAGTGCCGAGCGGCAGGGTCACAGCACCTGCTCCAGGTATCTGGTGGTGGTGGAGACCTGCATGTCTCTGGCCTCGCAGGTGGTCAAACTGACCAAACAACTGCACGACTCTCACGTCGAGTCGTGGCCGGAGATGATCTTGTCGGCCGAAGCGGCTCCTGATAACGGTCAGTGGACGCTGAAGCAGAGACACATGGACTCGGACGCCGGCCAGCGCAAGCTTCTGGGGGAGGCGGGGCCTGCAGCCGGACCAATGAGACGGCTGGGGCCAGGCGAGAGGCGGGAACTCAAGCTGGCTCGTCTCAAGCAGATCATGCAGCGCTCTCTCAGCGAATCAGACGCAGAAGAGTCCAAAGCGCCCGGCCCCGAGCGGCCCACGCAGCTGTCCATCGCGGAGCCCGACGAGAACAAGCACAAGTTCTCCTTAACCCACAGAACTTCCAAACCCGCGGACGCCTGCAACCCGTCTCCGTCGTCTGACCACAGCGACCCGGAAACCAAGAGCGAAGAGCTTCCCGACGGCCAGAAGCTCACCACCAGTCCCAAGAGCGCCCTCAAGTCCCCGTCGTCTCGCAGGAAGACCTCGCAGAACCTCAAGCTGAGGGTGACGTTTGACGAGCCGCCGCGGAAAGACGGACCGGCGCCGGACGCCAAAGCCCCGTCCGGGAAAGACAAGCCGGAGTCCGGCAAACGAGCGTTCGGGACGTTCCGCTCCATCATGGAGACCCTGAGCGGGAACCagaacagcaacaacaacaacgctCCGAGCGCCAAGAAGAGCGAGTCCAAGAGCAGAAACAAGACGAGCGCCGTTTAAAGCGGCTCCGAGACCCGTCTCGTTTCTGACGTCAGTGTCTAAACGTTCTCCGACTGGActcaaaaaaatgcttttctggCTCGTTTTCAGCCTAAATGtcttcttaaatcaagaaggagtGAAAACGTGgtcttgttttcagagaaaCCGGTTCTTGCTGTTTTCTGGCAGATGATTCAGCTTGCTCGaagcaaacattttattctgaaaacaagacctgaatccttctttcttttaagaaTTTCGAGACGTTTTGTCTGGAAACAAGACGAAAAAATCTAAGctagaaaagtgttttttgcagtgtatagagatattaaaagtagttttcaaatgttgttagtttttgcttaataaaagcagaaatatcTGCCAGTGGGGCAAGAAAACTAATCCAGTTATTATCACCCCGCTGAGAGAGGTTTTTCTCCTTTGTATTAATTGAAAACGATGCTCAGTATATTTGGACTCGTCGAGTGAATTCATCTCCACTCgagaatgtttagatatttctGCTGGAAAACGAGATGAAGGTCTTTATTTGCTGTGTACATGagaacacactttcacacatgTGCCGTTTTGCAAATACTGTGATTTCTGTACAGACTCGCTGATCGAAACCAAGCACGgacgaacgaacgaacgaatcACGTTCATCACGAAACGATTCAGTGCACAGAGCTCTTGAAGAATCCACCTTCAGTTTTCGTAACTCTAATACGTTTATATGTAACCTgtcttgttttttgttaaagTATGGGTTTATAATTTAACTGTTACGTTTGAACGCAAGAAACGCGGTATTATTGGAATCATTGTAACGACGTTTGgccattttttcaaataaagacGTTTCCAGCTGAGCTCAGTGTTACACGAGGGACGAAATGTTCAGAATTATGAAAATAGATGCAAGCCTGAAAAATCCACTTTTAACCTCGAGCGGAAAGTTTGTGATCCATGCcgttaaatgtcaaaaatgaatCTTGTTTTGTGAACCTCCTTAAACGAGAAGATTCGCCGCGAATAAAATCATTCtcttgttttctagta

Function

symbol description
sncaip Orthologous to human SNCAIP (synuclein alpha interacting protein).

NR:

description
PREDICTED: synphilin-1

GO: NA

KEGG:

id description
K04558 SNCAIP; synphilin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247757.1 True 3274 mRNA 0.54 10 966169 980033
XM_043247759.1 False 3262 mRNA 0.55 10 966169 980033
XM_043247760.1 False 3187 mRNA 0.54 9 966169 980033

Neighbor

gene id symbol gene type direction distance location
snx2 snx2,LOC107566389,LOC107713555,LOC107704573 coding downstream 4795 947899 ~ 961374 (-)
prdm6 prdm6,LOC107713557,LOC107726219 coding downstream 51794 885192 ~ 914375 (-)
nudt12 nudt12 coding downstream 157018 803023 ~ 809151 (-)
srp19 srp19,LOC107704595 coding downstream 179747 783648 ~ 786422 (-)
lrrc2 lrrc2,LOC107697579 coding downstream 195649 760218 ~ 770520 (-)
LOC122350790 lox,LOC107726222,LOC107704580 coding upstream 1601 981634 ~ 988560 (-)
prr16 LOC107713553 coding upstream 18615 998648 ~ 1004413 (-)
dmxl1 dmxl1,LOC107571775,LOC107663590,LOC107704574 coding upstream 36857 1016890 ~ 1057927 (-)
ap3s1 ap3s1,LOC107661175,LOC107566394,LOC107729057 coding upstream 180367 1160400 ~ 1168457 (-)
LOC122350094 NA coding upstream 264801 1244834 ~ 1248364 (-)
LOC122351117 NA non-coding downstream 19830 924448 ~ 946339 (-)
G60112 NA non-coding downstream 89300 875959 ~ 876869 (-)
G60080 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107726216,LOC107704598,LOC107573349 non-coding downstream 114010 845419 ~ 852159 (-)
G60085 NA non-coding downstream 131038 832727 ~ 835131 (-)
G60079 NA non-coding downstream 145401 816461 ~ 820768 (-)
G60118 hsd17b4 non-coding upstream 31334 1011367 ~ 1011818 (-)
G60131 NA non-coding upstream 81060 1061093 ~ 1062238 (-)
G60133 NA non-coding upstream 84364 1064397 ~ 1065200 (-)
G60153 NA non-coding upstream 140895 1120928 ~ 1122233 (-)
G60154 NA non-coding upstream 204275 1184308 ~ 1184649 (-)
csgalnact1b LOC107712620 other downstream 226797 732793 ~ 739372 (-)
LOC122349987 LOC107661519,LOC107712504,LOC107726877,LOC107704593,LOC107573347,LOC794598 other downstream 234325 723145 ~ 731844 (-)
ccl27a NA other downstream 395196 565886 ~ 570973 (-)
G60098 NA other upstream 155368 1135401 ~ 1138152 (-)
commd10 commd10,LOC107728250,LOC107663591 other upstream 160665 1140698 ~ 1159286 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other upstream 369138 1349171 ~ 1356953 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other upstream 581513 1561546 ~ 1606609 (-)
G60220 NA other upstream 596772 1576805 ~ 1580616 (-)

Expression


Co-expression Network