LOC122350979 (LOC107728433,LOC107676613)


Basic Information

Item Value
gene id LOC122350979
gene name LOC107728433,LOC107676613
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 18663946 ~ 18672229 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043247779.1
CAAACCACAAACCAAAGCTGCAAGTTCCCTAGGAAACTCCAAAGATGGTCCGACCTTCAACAAAGAGACATCTACACTTTTGAACTGGACTTTAACAGCAGAAGAACCGCTTTGGAGCTGAACTTTACGGGCAGGTGTAACTGTAAGCAATCGCATTCGATTCAGTGAGGTGCCCCATGTTGACCCGTGAACAGAAATGGGCCGAACCATGCGATGCGTCCCTGTCCCGTGAGAAGTCTGAGAGCGCACGGCACCCATCACGACAGCAGGCTCCATGGCACGGAACTCCATAGTCAAACAAAGACTACAGCTCCAAGTCACAAACCAGAGAGGGGTCCCACCTCTTAAAACATTTCCAGTACATCAACATGGATCATCTTCTCCAAACACCGGTGCCTATAGCAACAGCATGCTTCAGGGGAGGTCTCTTAGAGACTCAAGAAACCTCTCGGAAAAAAACGCCAGGAAAGCATTCACAGCCAAAAAAGCGCTGCTCATAGCATGTGGAGTGCGATGTGTCCTGTCACCACGACCCTCCAACTGCTCCACAACGTCACCCCATAAAGACGAGAAAGACAGAGCTCAATCCACCTCTGCAGGAGAACAGGAAAGCGGTAGAGACTGTGTCGAAACAAAGAGCGAGCTGAAAATATGGGATGCATACACTGTGATAAAAAGAAcaggggagagagaaagagcgcgGAGCGGTATTCACAGACGGAGAGTCCCGCCGGATTCAAGTCACCGGCCCTCCACTGTCCCCCTGGAGAATGAGAGGGGACGCCGAGCACTGAGCACACCAGAAACCCCCATATGTAAGATTCTCTGGAGAAGAAAAGATGACCAAAACATCCTTCAAGAGAGACCTCAACATTTTACCGATGAGGAGAATCTCAGTCTAACCCCATTACTCCATCTCTACCTGCCTTCGTCATATCAGCCGCAGGAGCCGAGAGAAGAAACAGCACCCGGACAGGAAAACAgCTCAGAGGCGCGAGACGTCGCCGAGCCCGACATCGCCACGGAGAGCCAAAAACAAGACATCACCGTCGATGAAACGGCAGACGAAGGACAAAACGGTTTCACAGACGACATGCGGTATGATCTTACAGACACCTGGGAGAACGACACTCCCGAGGTAACTTTTGAGAATGACCTGACTGAGGAAAGACGTCCCCAAGACGTCACGGGTGACAACAGACAACACGAAATCATAGAGAATCAATGCGACGCGGGCCGATCTTTAAGTATTGCAGAGGACGAGCAAGAATATGACTTTACAGAGAAGACTGAAGGCGTATATAGGAGAACCACATCTAACAGAGGTTCTCACAAAGCTCCTGATCTCAAACTCTCAGTCAAAACACGTTATCCGTCCACAGCTACGCCGCTGACGTTCCCGTCTTCCCTGGCGGCCAGAAATCCCTCTCCCGCTCTCAGCGTCCTGCCATCGTTTTATGGAACGTCATTTGGCTATCGCGTCAGAACCACATCTGAGCCCCGCCGATCCAAAACGAGGACCAGAAAAGCCGTTGATGACAGCAGAACTGCACGGCCCATGAATGACATGAGACTTACCATAGAAATAAAAGGAGACCCCTGCTTGTTGAAAACAAGGGCTGGAGTGCCAGTCAGCCCCCACCCCGAAATAATGAGCGCCGAGAGGGGGTCCCACCCTCGTAAAACCAAAACCACCAAGACGTTTCTGTGGGGACCCGGAGGGGCCCCTAGAGACCAAGACAGTGTGTGAGCTGCACAGTCCTGCGAACAGGTGGAGAAGCCTGGATTAAGTGACGGCACATTCCTGTCCAGTACAGAACATCTGCTTTGTTAAATGAAGTTTGATGGAATCTAAGTGGTGCGGACTGGCATGCTAGACCTATTTAGGTCTGACAGCTCGGCTTTGAGAAGAATGGCTTCAGCACAGGCTGCAGTGTTGAGTTAAGTCCAGCAGGGAAGAGTGATGGACTTTTTAGGTTTTCTTTCTGACACCCATATGGTCTTCCTCAGTGAAAGGAGCTTAAGCTCTATTGACACAGATTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107728433, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043247779.1 True 2043 mRNA 0.51 5 18663946 18672229

Neighbor

gene id symbol gene type direction distance location
olfml2a olfml2a,LOC107657324,LOC107550966,LOC107554414,LOC107703179 coding upstream 12392 18634296 ~ 18651554 (+)
zgc:152830 zgc:152830,LOC107550967,LOC107657328,LOC107703177,LOC107554415,LOC107712486 coding upstream 49054 18608715 ~ 18614892 (+)
dusp2 dusp2,LOC107657330,LOC107712482,LOC107550972,LOC107554416,LOC107703175 coding upstream 207407 18453576 ~ 18456539 (+)
LOC122350731 LOC107703135,LOC107753145,LOC107550932,LOC107712468,LOC107657321 coding upstream 216885 18443075 ~ 18447061 (+)
gck gck,LOC107657322,LOC107550933,LOC107712466,LOC107753094,LOC107703174 coding upstream 246926 18408086 ~ 18417020 (+)
arpc5la arpc5la,LOC107571143,LOC107728439,LOC107550963,LOC107676626,LOC107753090,LOC108411248 coding downstream 3090 18675319 ~ 18678826 (+)
si:ch211-158d24.4 NA coding downstream 53554 18725783 ~ 18729136 (+)
si:dkeyp-14d3.1 si:dkeyp-14d3.1,LOC107676622,LOC107728438,LOC107659267,LOC107550917,LOC107753136 coding downstream 89418 18761647 ~ 18941677 (+)
glt1d1 glt1d1,LOC107676618,LOC107659266 coding downstream 324240 18996469 ~ 19023292 (+)
LOC122351071 slc7a4 coding downstream 409368 19081597 ~ 19090260 (+)
G64889 NA non-coding upstream 45762 18616978 ~ 18618184 (+)
G64878 NA non-coding upstream 212582 18451042 ~ 18451364 (+)
G64862 NA non-coding upstream 272735 18390674 ~ 18391211 (+)
G64858 NA non-coding upstream 296836 18366570 ~ 18367110 (+)
G64855 NA non-coding upstream 315163 18347437 ~ 18348783 (+)
G64910 NA non-coding downstream 1738 18673967 ~ 18674344 (+)
G65073 LOC107564452,LOC107733255,LOC107755688,LOC107702821,LOC107733264,LOC107668424,LOC553487,LOC107564453 non-coding downstream 339704 19011933 ~ 19234600 (+)
G65094 NA non-coding downstream 377053 19049282 ~ 19212125 (+)
G65108 NA non-coding downstream 511461 19183690 ~ 19347044 (+)
G65074 NA non-coding downstream 552340 19224569 ~ 19233384 (+)
gpat2 gpat2,LOC107712449,LOC107550920,LOC107657318 other upstream 63462 18565699 ~ 18600484 (+)
adra2b adra2b,LOC107712484,LOC107657329,LOC107554404,LOC107753091,LOC107550971,LOC107703147 other upstream 199399 18460051 ~ 18464547 (+)
sb:cb288 NA other upstream 240141 18418948 ~ 18423805 (+)
lrrc75ba lrrc75ba,LOC107712478,LOC107753104,LOC107703167,LOC107554425,LOC107687975,LOC105891565,LOC108414797 other upstream 378985 18258220 ~ 18284961 (+)
LOC122350298 pla2g1b,LOC107703141,LOC107753147,LOC107554411,LOC107554412,LOC107550943 other upstream 583377 18071485 ~ 18080569 (+)
si:ch211-158d24.2 si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137 other downstream 23225 18695454 ~ 18722246 (+)
G65100 sf3a1,LOC107564451,LOC107550953 other downstream 422718 19094947 ~ 19096071 (+)
G65105 LOC107747205,LOC107550912,LOC107683889,LOC108412149 other downstream 447715 19119944 ~ 19152305 (+)
LOC122350733 LOC107702875,LOC107722994,LOC107591954,LOC107573969,LOC107722996,LOC107691581 other downstream 527759 19199988 ~ 19201687 (+)
pqbp1 pqbp1,LOC107702814,LOC107683912,LOC107747222 other downstream 599863 19272092 ~ 19273770 (+)

Expression


Co-expression Network